; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg010992 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010992
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationscaffold4:26727094..26728787
RNA-Seq ExpressionSpg010992
SyntenySpg010992
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-1457.32Show/hide
Query:  KLYLVRCRVFENEEFDVPRGNRLSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRASLRQRRWECWAGPTTS
        +L+++  R+   E  ++PRGNRLSLQT E+DKT             PL TLSVL DNDAVVSAG+A LRQRRWEC  GPTTS
Subjt:  KLYLVRCRVFENEEFDVPRGNRLSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRASLRQRRWECWAGPTTS

KAA0040575.1 putative integrase [Cucumis melo var. makuwa]2.3e-1851.49Show/hide
Query:  EHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRF-------ELHRRNQEHSGVYKLNQKL-YLVRCRVFENEEFDVPRGNRLSLQT
        +HFEERVK EEEEEFRGLRLKKIGKSSC ASHCRIWVQ      F+ F       E+H+ NQ+   +  L     +L+     ++ ++D+ RGNR SLQ 
Subjt:  EHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRF-------ELHRRNQEHSGVYKLNQKL-YLVRCRVFENEEFDVPRGNRLSLQT

Query:  GELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVV
        GELDKT             PL T  VLRDNDAVV
Subjt:  GELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVV

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]2.3e-1848.03Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEHSGVYKLNQKLYLVRCRV
        TKPTTD  IFQ NFI FLHHF  KLSE+F+ERVK EEEEEFRGLRLKK+ K   ++   +    T+NLWF                         V   +
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEHSGVYKLNQKLYLVRCRV

Query:  FENEEFDVPRGNRLSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVV
           E    PRGNR SLQTG+LDKT              L TLSVLRDNDAV+
Subjt:  FENEEFDVPRGNRLSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVV

TYK04298.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.0e-1851.63Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEHSGVYKLNQKLYLVRCRV
        TKPTT   IFQ NFISFLHHFP KL EHFEERVK EEEEEFR ++ +   +S+  +S             F+ F      QE   V+K NQKLYL     
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEHSGVYKLNQKLYLVRCRV

Query:  FENEEFDV-PRGNRLSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVV
         ++ ++DV PRGNR SLQTGELDKT   +          L TLSVLRDNDAVV
Subjt:  FENEEFDV-PRGNRLSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVV

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]5.9e-3056.1Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIR---FELHRRNQEHSGVYKLNQKLYLVRCRVFENEE
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW    +  F  +   F +         V K NQKLY       ++ +
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIR---FELHRRNQEHSGVYKLNQKLYLVRCRVFENEE

Query:  FDV-PRGNRLSLQTGELDKTPEAIWYRVH------------TGYIPLLTLSVLRDNDAVVSAGR
        +DV PRGNR SLQTG+LDK   +I Y                   PL TLSVLRDNDAVVS G+
Subjt:  FDV-PRGNRLSLQTGELDKTPEAIWYRVH------------TGYIPLLTLSVLRDNDAVVSAGR

TrEMBL top hitse value%identityAlignment
A0A5A7TGM2 Putative integrase1.1e-1851.49Show/hide
Query:  EHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRF-------ELHRRNQEHSGVYKLNQKL-YLVRCRVFENEEFDVPRGNRLSLQT
        +HFEERVK EEEEEFRGLRLKKIGKSSC ASHCRIWVQ      F+ F       E+H+ NQ+   +  L     +L+     ++ ++D+ RGNR SLQ 
Subjt:  EHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRF-------ELHRRNQEHSGVYKLNQKL-YLVRCRVFENEEFDVPRGNRLSLQT

Query:  GELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVV
        GELDKT             PL T  VLRDNDAVV
Subjt:  GELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVV

A0A5A7UGD0 Uncharacterized protein1.1e-1848.03Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEHSGVYKLNQKLYLVRCRV
        TKPTTD  IFQ NFI FLHHF  KLSE+F+ERVK EEEEEFRGLRLKK+ K   ++   +    T+NLWF                         V   +
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEHSGVYKLNQKLYLVRCRV

Query:  FENEEFDVPRGNRLSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVV
           E    PRGNR SLQTG+LDKT              L TLSVLRDNDAV+
Subjt:  FENEEFDVPRGNRLSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVV

A0A5D3BTP3 Reverse transcriptase7.5e-1557.32Show/hide
Query:  KLYLVRCRVFENEEFDVPRGNRLSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRASLRQRRWECWAGPTTS
        +L+++  R+   E  ++PRGNRLSLQT E+DKT             PL TLSVL DNDAVVSAG+A LRQRRWEC  GPTTS
Subjt:  KLYLVRCRVFENEEFDVPRGNRLSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRASLRQRRWECWAGPTTS

A0A5D3BZ50 Pentatricopeptide repeat-containing protein5.0e-1951.63Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEHSGVYKLNQKLYLVRCRV
        TKPTT   IFQ NFISFLHHFP KL EHFEERVK EEEEEFR ++ +   +S+  +S             F+ F      QE   V+K NQKLYL     
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEHSGVYKLNQKLYLVRCRV

Query:  FENEEFDV-PRGNRLSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVV
         ++ ++DV PRGNR SLQTGELDKT   +          L TLSVLRDNDAVV
Subjt:  FENEEFDV-PRGNRLSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVV

A0A5D3CAC6 Uncharacterized protein2.8e-3056.1Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIR---FELHRRNQEHSGVYKLNQKLYLVRCRVFENEE
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW    +  F  +   F +         V K NQKLY       ++ +
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIR---FELHRRNQEHSGVYKLNQKLYLVRCRVFENEE

Query:  FDV-PRGNRLSLQTGELDKTPEAIWYRVH------------TGYIPLLTLSVLRDNDAVVSAGR
        +DV PRGNR SLQTG+LDK   +I Y                   PL TLSVLRDNDAVVS G+
Subjt:  FDV-PRGNRLSLQTGELDKTPEAIWYRVH------------TGYIPLLTLSVLRDNDAVVSAGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTACGTTGTAGAGTGTTCGAAAATGAAGAGTTTGAT
GTGCCAAGAGGAAATAGGTTGAGTCTACAAACCGGGGAACTAGATAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGT
ACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCTCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTACGTTGTAGAGTGTTCGAAAATGAAGAGTTTGAT
GTGCCAAGAGGAAATAGGTTGAGTCTACAAACCGGGGAACTAGATAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGT
ACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCTCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG
Protein sequenceShow/hide protein sequence
MDSTKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEHSGVYKLNQKLYLVRCRVFENEEFD
VPRGNRLSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRASLRQRRWECWAGPTTS