; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg010996 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg010996
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold4:25626107..25631767
RNA-Seq ExpressionSpg010996
SyntenySpg010996
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]4.5e-2353.38Show/hide
Query:  PRGSRSSLQTGELDKTVSDKMNFENVLKRLPHYDKDD-GSAGRAPLHRRTSKRWLYWACPT----QRKSVMLVEIELPVPDTLPTSAESSRSSSSTWLEL
        PRG+R SLQT E+DKTV   ++  +VL      D D   SAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTWLEL
Subjt:  PRGSRSSLQTGELDKTVSDKMNFENVLKRLPHYDKDD-GSAGRAPLHRRTSKRWLYWACPT----QRKSVMLVEIELPVPDTLPTSAESSRSSSSTWLEL

Query:  YIESVTFQTRFNV----------SVGSTGIVRGDDVCWLHAVFRAKLA
        Y ESV  +  + V           + S  IVRGDDVCWLHA+FRAK A
Subjt:  YIESVTFQTRFNV----------SVGSTGIVRGDDVCWLHAVFRAKLA

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]6.7e-3558.94Show/hide
Query:  LWPRGSRSSLQTGELDKTVSDKMNFENVLKRL--------PHYDKDDGSAGRAPLHRRTSKRWLYWACPTQRKSVML----------VEIELPVPDTLPT
        +WPRG+RSSLQTGELDKTV   ++  +VL+          PHYDKDDG+A RAPLHRRTSKRWLYWACPT R+SVML          VEIEL VPDTLPT
Subjt:  LWPRGSRSSLQTGELDKTVSDKMNFENVLKRL--------PHYDKDDGSAGRAPLHRRTSKRWLYWACPTQRKSVML----------VEIELPVPDTLPT

Query:  SAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAK
        SAESS S+S                      S GIVRGDDVCWLH VFRAK
Subjt:  SAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAK

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]6.7e-3558.94Show/hide
Query:  LWPRGSRSSLQTGELDKTVSDKMNFENVLKRL--------PHYDKDDGSAGRAPLHRRTSKRWLYWACPTQRKSVML----------VEIELPVPDTLPT
        +WPRG+RSSLQTGELDKTV   ++  +VL+          PHYDKDDG+A RAPLHRRTSKRWLYWACPT R+SVML          VEIEL VPDTLPT
Subjt:  LWPRGSRSSLQTGELDKTVSDKMNFENVLKRL--------PHYDKDDGSAGRAPLHRRTSKRWLYWACPTQRKSVML----------VEIELPVPDTLPT

Query:  SAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAK
        SAESS S+S                      S GIVRGDDVCWLH VFRAK
Subjt:  SAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAK

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]4.5e-2353.38Show/hide
Query:  PRGSRSSLQTGELDKTVSDKMNFENVLKRLPHYDKDD-GSAGRAPLHRRTSKRWLYWACPT----QRKSVMLVEIELPVPDTLPTSAESSRSSSSTWLEL
        PRG+R SLQT E+DKTV   ++  +VL      D D   SAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTWLEL
Subjt:  PRGSRSSLQTGELDKTVSDKMNFENVLKRLPHYDKDD-GSAGRAPLHRRTSKRWLYWACPT----QRKSVMLVEIELPVPDTLPTSAESSRSSSSTWLEL

Query:  YIESVTFQTRFNV----------SVGSTGIVRGDDVCWLHAVFRAKLA
        Y ESV  +  + V           + S  IVRGDDVCWLHA+FRAK A
Subjt:  YIESVTFQTRFNV----------SVGSTGIVRGDDVCWLHAVFRAKLA

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]4.2e-2151.02Show/hide
Query:  LWPRGSRSSLQTGELDKTVSDKMNFENVLKRLPHYDKDDGSAGRAPLHRRTSKRWLYWACPTQRKSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIE
        L PRG+R SLQTGELDKTV   ++  +VL+        D +A                             IELPVPDTLPTSAESS S+SSTWLELY E
Subjt:  LWPRGSRSSLQTGELDKTVSDKMNFENVLKRLPHYDKDDGSAGRAPLHRRTSKRWLYWACPTQRKSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIE

Query:  SV------TFQTR--------FNVSVGSTGIVRGDDVCWLHAVFRAK
        SV      +F  +        FNVSVGSTGIVRGDDVCWLHAVFRAK
Subjt:  SV------TFQTR--------FNVSVGSTGIVRGDDVCWLHAVFRAK

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase2.2e-2353.38Show/hide
Query:  PRGSRSSLQTGELDKTVSDKMNFENVLKRLPHYDKDD-GSAGRAPLHRRTSKRWLYWACPT----QRKSVMLVEIELPVPDTLPTSAESSRSSSSTWLEL
        PRG+R SLQT E+DKTV   ++  +VL      D D   SAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTWLEL
Subjt:  PRGSRSSLQTGELDKTVSDKMNFENVLKRLPHYDKDD-GSAGRAPLHRRTSKRWLYWACPT----QRKSVMLVEIELPVPDTLPTSAESSRSSSSTWLEL

Query:  YIESVTFQTRFNV----------SVGSTGIVRGDDVCWLHAVFRAKLA
        Y ESV  +  + V           + S  IVRGDDVCWLHA+FRAK A
Subjt:  YIESVTFQTRFNV----------SVGSTGIVRGDDVCWLHAVFRAKLA

A0A5A7VGQ5 Uncharacterized protein3.2e-3558.94Show/hide
Query:  LWPRGSRSSLQTGELDKTVSDKMNFENVLKRL--------PHYDKDDGSAGRAPLHRRTSKRWLYWACPTQRKSVML----------VEIELPVPDTLPT
        +WPRG+RSSLQTGELDKTV   ++  +VL+          PHYDKDDG+A RAPLHRRTSKRWLYWACPT R+SVML          VEIEL VPDTLPT
Subjt:  LWPRGSRSSLQTGELDKTVSDKMNFENVLKRL--------PHYDKDDGSAGRAPLHRRTSKRWLYWACPTQRKSVML----------VEIELPVPDTLPT

Query:  SAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAK
        SAESS S+S                      S GIVRGDDVCWLH VFRAK
Subjt:  SAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAK

A0A5D3BG85 Uncharacterized protein3.2e-3558.94Show/hide
Query:  LWPRGSRSSLQTGELDKTVSDKMNFENVLKRL--------PHYDKDDGSAGRAPLHRRTSKRWLYWACPTQRKSVML----------VEIELPVPDTLPT
        +WPRG+RSSLQTGELDKTV   ++  +VL+          PHYDKDDG+A RAPLHRRTSKRWLYWACPT R+SVML          VEIEL VPDTLPT
Subjt:  LWPRGSRSSLQTGELDKTVSDKMNFENVLKRL--------PHYDKDDGSAGRAPLHRRTSKRWLYWACPTQRKSVML----------VEIELPVPDTLPT

Query:  SAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAK
        SAESS S+S                      S GIVRGDDVCWLH VFRAK
Subjt:  SAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAK

A0A5D3BTP3 Reverse transcriptase2.2e-2353.38Show/hide
Query:  PRGSRSSLQTGELDKTVSDKMNFENVLKRLPHYDKDD-GSAGRAPLHRRTSKRWLYWACPT----QRKSVMLVEIELPVPDTLPTSAESSRSSSSTWLEL
        PRG+R SLQT E+DKTV   ++  +VL      D D   SAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTWLEL
Subjt:  PRGSRSSLQTGELDKTVSDKMNFENVLKRLPHYDKDD-GSAGRAPLHRRTSKRWLYWACPT----QRKSVMLVEIELPVPDTLPTSAESSRSSSSTWLEL

Query:  YIESVTFQTRFNV----------SVGSTGIVRGDDVCWLHAVFRAKLA
        Y ESV  +  + V           + S  IVRGDDVCWLHA+FRAK A
Subjt:  YIESVTFQTRFNV----------SVGSTGIVRGDDVCWLHAVFRAKLA

A0A5D3CJX3 CCHC-type domain-containing protein2.0e-2151.02Show/hide
Query:  LWPRGSRSSLQTGELDKTVSDKMNFENVLKRLPHYDKDDGSAGRAPLHRRTSKRWLYWACPTQRKSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIE
        L PRG+R SLQTGELDKTV   ++  +VL+        D +A                             IELPVPDTLPTSAESS S+SSTWLELY E
Subjt:  LWPRGSRSSLQTGELDKTVSDKMNFENVLKRLPHYDKDDGSAGRAPLHRRTSKRWLYWACPTQRKSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIE

Query:  SV------TFQTR--------FNVSVGSTGIVRGDDVCWLHAVFRAK
        SV      +F  +        FNVSVGSTGIVRGDDVCWLHAVFRAK
Subjt:  SV------TFQTR--------FNVSVGSTGIVRGDDVCWLHAVFRAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAGTAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTGAGTGACAAAAT
GAATTTCGAAAACGTTCTTAAACGGTTGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGT
GCCCTACACAACGTAAATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAG
TTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAA
GCTAGCAGTGGTGACTCCGGGTCTTGAACAAAGGGATCCCGCCCTCTCATTGGCCCGAGAGGGACTTTCTGTTTACTGGTTGGACCATAAACAGGGTAGCCTCGTGGTGG
TGTCTGTTGAAGTATTCAAAGTCGTCAACACAACTACGTTCCTAATCTTAGAGAATAGCAGGGTAGCCTCGTGGTGGTGTCTGTTGAAGTATTCAGGGTCGTCAACGGAG
AGATGTCTGCATGCGTTACCTGTCAGGGATTTAGAATGCTGCTACTGCATCCGGCTGGCCAAGCGGGAGTTAGCAACTTGCTTAACTTTTCATCCCTTTTTCCGCCCACT
TGCGCTAGTTGTGTCAGCGCTTGTCTTTTCATCATCTTATCTTTCTCTTGATCATCTTGGAATCTCCCCCAAACTTAAATCGGACAATGCCCTCATTGTCCCCCAAACTT
ACTCTGGAGCGCATGGACTGAAAGAGATCAAGGCTGAGGTGCGGCAAGTCGAAAATGCGAAGGGATTTTCCTTAAGGTCTGAGGAAATGAAGACAAAGGTTAAACCAATT
TAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAGTAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTGAGTGACAAAAT
GAATTTCGAAAACGTTCTTAAACGGTTGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGT
GCCCTACACAACGTAAATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAG
TTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAA
GCTAGCAGTGGTGACTCCGGGTCTTGAACAAAGGGATCCCGCCCTCTCATTGGCCCGAGAGGGACTTTCTGTTTACTGGTTGGACCATAAACAGGGTAGCCTCGTGGTGG
TGTCTGTTGAAGTATTCAAAGTCGTCAACACAACTACGTTCCTAATCTTAGAGAATAGCAGGGTAGCCTCGTGGTGGTGTCTGTTGAAGTATTCAGGGTCGTCAACGGAG
AGATGTCTGCATGCGTTACCTGTCAGGGATTTAGAATGCTGCTACTGCATCCGGCTGGCCAAGCGGGAGTTAGCAACTTGCTTAACTTTTCATCCCTTTTTCCGCCCACT
TGCGCTAGTTGTGTCAGCGCTTGTCTTTTCATCATCTTATCTTTCTCTTGATCATCTTGGAATCTCCCCCAAACTTAAATCGGACAATGCCCTCATTGTCCCCCAAACTT
ACTCTGGAGCGCATGGACTGAAAGAGATCAAGGCTGAGGTGCGGCAAGTCGAAAATGCGAAGGGATTTTCCTTAAGGTCTGAGGAAATGAAGACAAAGGTTAAACCAATT
TAA
Protein sequenceShow/hide protein sequence
MENRAQDFRAKQEDLWPRGSRSSLQTGELDKTVSDKMNFENVLKRLPHYDKDDGSAGRAPLHRRTSKRWLYWACPTQRKSVMLVEIELPVPDTLPTSAESSRSSSSTWLE
LYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAVVTPGLEQRDPALSLAREGLSVYWLDHKQGSLVVVSVEVFKVVNTTTFLILENSRVASWWCLLKYSGSSTE
RCLHALPVRDLECCYCIRLAKRELATCLTFHPFFRPLALVVSALVFSSSYLSLDHLGISPKLKSDNALIVPQTYSGAHGLKEIKAEVRQVENAKGFSLRSEEMKTKVKPI