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Spg011007 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011007
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold4:25575764..25579798
RNA-Seq ExpressionSpg011007
SyntenySpg011007
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]1.5e-2061Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTYAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPT AESS S+ +TW                           FNVSVGSTGIVRGDDVCWLHAVFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTYAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]8.1e-3042.35Show/hide
Query:  EHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQ--TVNLWFFLRF-------ELHRRNQEVSCRVFENE--EFDVYFINCGSVLRKLWVLESRIS
        EHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW    +     FL F       E+ + NQ++   +   +  ++DV      S L+   + +  IS
Subjt:  EHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQ--TVNLWFFLRF-------ELHRRNQEVSCRVFENE--EFDVYFINCGSVLRKLWVLESRIS

Query:  IDYMTEILSPRLYGTVCTQV---------------------------------------------------------EIELPVPDTLPTYAESSRSSSST
        IDYMTEILS RLYGTVC QV                                                         EIEL VPDTLPT AESS S+SST
Subjt:  IDYMTEILSPRLYGTVCTQV---------------------------------------------------------EIELPVPDTLPTYAESSRSSSST

Query:  WFNV-------------------SVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        W                       V S GIVR +DVCWLHAVFRAK+AGG GG V
Subjt:  WFNV-------------------SVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]3.3e-2351.03Show/hide
Query:  ELHRRNQE---VSCRVFENEEFDVYFINCGSVLRKLWVLESRIS-------------------IDYMTEILSPRLYGTVCTQ---VEIELPVPDTLPTYA
        E+H+  Q+   VSCRV ENE+F VYFINCG VLRKLWVLE RIS                   +D  T I        +C     VEIELPVPDTLPT  
Subjt:  ELHRRNQE---VSCRVFENEEFDVYFINCGSVLRKLWVLESRIS-------------------IDYMTEILSPRLYGTVCTQ---VEIELPVPDTLPTYA

Query:  ESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
               +  +    GS GIVRGDDVCWLHAV RAK+AGGPGG V
Subjt:  ESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV

TYK14495.1 putative polyprotein [Cucumis melo var. makuwa]1.4e-2141.31Show/hide
Query:  DVEHFEERVK--EEEEEEFRG--LRLKKIGKSSCKASHCRIWVQTVNLWFFLRFELHRRNQE---VSCRVFENEEFDVYFINCGSVLRKLWVLESRISID
        D  + EE V+  + +E+  R   +RL K    S K     ++   +++      E+H+ NQ+   VSCRVFENE F VYFIN G VLRKLWVLE RIS  
Subjt:  DVEHFEERVK--EEEEEEFRG--LRLKKIGKSSCKASHCRIWVQTVNLWFFLRFELHRRNQE---VSCRVFENEEFDVYFINCGSVLRKLWVLESRISID

Query:  YMTEI--------------------LSPRLYGTVC------------------TQVEIELPVPDTLPTYAESSRSSSSTWFNVSVGSTGIVRGDDVCWLH
           E+                    LS  +Y                        VEIELPVPDTLPT AES        F  +  S GIVRGDDVCWLH
Subjt:  YMTEI--------------------LSPRLYGTVC------------------TQVEIELPVPDTLPTYAESSRSSSSTWFNVSVGSTGIVRGDDVCWLH

Query:  AVFRAKLAGGPGG
        AVFRAK AG PGG
Subjt:  AVFRAKLAGGPGG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-2062.38Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTYAESSRSSSSTWFNVSV--------GSTGIVRGDDVCWLHAVFRAKLAGGPGGD
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPT AESS S+SSTW  + V           GIVR DDVCWLHAVFRAK AGGPGG 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTYAESSRSSSSTWFNVSV--------GSTGIVRGDDVCWLHAVFRAKLAGGPGGD

Query:  V
        V
Subjt:  V

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein7.4e-2161Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTYAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPT AESS S+ +TW                           FNVSVGSTGIVRGDDVCWLHAVFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTYAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG

A0A5D3CAC6 Uncharacterized protein3.9e-3042.35Show/hide
Query:  EHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQ--TVNLWFFLRF-------ELHRRNQEVSCRVFENE--EFDVYFINCGSVLRKLWVLESRIS
        EHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW    +     FL F       E+ + NQ++   +   +  ++DV      S L+   + +  IS
Subjt:  EHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQ--TVNLWFFLRF-------ELHRRNQEVSCRVFENE--EFDVYFINCGSVLRKLWVLESRIS

Query:  IDYMTEILSPRLYGTVCTQV---------------------------------------------------------EIELPVPDTLPTYAESSRSSSST
        IDYMTEILS RLYGTVC QV                                                         EIEL VPDTLPT AESS S+SST
Subjt:  IDYMTEILSPRLYGTVCTQV---------------------------------------------------------EIELPVPDTLPTYAESSRSSSST

Query:  WFNV-------------------SVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        W                       V S GIVR +DVCWLHAVFRAK+AGG GG V
Subjt:  WFNV-------------------SVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV

A0A5D3CJL4 Retrotrans_gag domain-containing protein1.6e-2351.03Show/hide
Query:  ELHRRNQE---VSCRVFENEEFDVYFINCGSVLRKLWVLESRIS-------------------IDYMTEILSPRLYGTVCTQ---VEIELPVPDTLPTYA
        E+H+  Q+   VSCRV ENE+F VYFINCG VLRKLWVLE RIS                   +D  T I        +C     VEIELPVPDTLPT  
Subjt:  ELHRRNQE---VSCRVFENEEFDVYFINCGSVLRKLWVLESRIS-------------------IDYMTEILSPRLYGTVCTQ---VEIELPVPDTLPTYA

Query:  ESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
               +  +    GS GIVRGDDVCWLHAV RAK+AGGPGG V
Subjt:  ESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV

A0A5D3CSJ5 Putative polyprotein6.7e-2241.31Show/hide
Query:  DVEHFEERVK--EEEEEEFRG--LRLKKIGKSSCKASHCRIWVQTVNLWFFLRFELHRRNQE---VSCRVFENEEFDVYFINCGSVLRKLWVLESRISID
        D  + EE V+  + +E+  R   +RL K    S K     ++   +++      E+H+ NQ+   VSCRVFENE F VYFIN G VLRKLWVLE RIS  
Subjt:  DVEHFEERVK--EEEEEEFRG--LRLKKIGKSSCKASHCRIWVQTVNLWFFLRFELHRRNQE---VSCRVFENEEFDVYFINCGSVLRKLWVLESRISID

Query:  YMTEI--------------------LSPRLYGTVC------------------TQVEIELPVPDTLPTYAESSRSSSSTWFNVSVGSTGIVRGDDVCWLH
           E+                    LS  +Y                        VEIELPVPDTLPT AES        F  +  S GIVRGDDVCWLH
Subjt:  YMTEI--------------------LSPRLYGTVC------------------TQVEIELPVPDTLPTYAESSRSSSSTWFNVSVGSTGIVRGDDVCWLH

Query:  AVFRAKLAGGPGG
        AVFRAK AG PGG
Subjt:  AVFRAKLAGGPGG

A0A5D3DX39 Reverse transcriptase9.7e-2162.38Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTYAESSRSSSSTWFNVSV--------GSTGIVRGDDVCWLHAVFRAKLAGGPGGD
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPT AESS S+SSTW  + V           GIVR DDVCWLHAVFRAK AGGPGG 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTYAESSRSSSSTWFNVSV--------GSTGIVRGDDVCWLHAVFRAKLAGGPGGD

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCTCGTCCTTCTCGTGTCGTGCATGGGTATTTCGGATTGCTCCTCTTGCCGTCACACGCTTGCTTCAGCTTCGTGGGCGGTTGGATTACTCTGGGAACGAGTAAT
CTTGCGTGATAATGAAGGCTTGGGCGAATTTTTTATGGTTCTTGATGTGGAGCACTTTGAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGA
AGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTTTTCTTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTA
AGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTGTGGTTCCGTATTGAGGAAGTTATGGGTATTGGAATCTAGGATTTCTATTGACTACATGAC
TGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTATGCTGAAAGTTCTAGATCAAGCTCCA
GTACGTGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGAC
GTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTATTGTCGAGAGTGAGTCCGGTCAGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTCTCGTCCTTCTCGTGTCGTGCATGGGTATTTCGGATTGCTCCTCTTGCCGTCACACGCTTGCTTCAGCTTCGTGGGCGGTTGGATTACTCTGGGAACGAGTAAT
CTTGCGTGATAATGAAGGCTTGGGCGAATTTTTTATGGTTCTTGATGTGGAGCACTTTGAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGA
AGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTTTTCTTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTA
AGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTGTGGTTCCGTATTGAGGAAGTTATGGGTATTGGAATCTAGGATTTCTATTGACTACATGAC
TGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTATGCTGAAAGTTCTAGATCAAGCTCCA
GTACGTGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGAC
GTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTATTGTCGAGAGTGAGTCCGGTCAGGACTAG
Protein sequenceShow/hide protein sequence
MGLVLLVSCMGISDCSSCRHTLASASWAVGLLWERVILRDNEGLGEFFMVLDVEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFLRFELHRRNQEV
SCRVFENEEFDVYFINCGSVLRKLWVLESRISIDYMTEILSPRLYGTVCTQVEIELPVPDTLPTYAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGD
VGSVQIELAEYGPSIVESESGQD