CuGenDBv2

Gene ID	Spg011018
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Genome location	scaffold4:28675422..28678883
RNA-Seq Expression	Spg011018
Synteny	Spg011018
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0008233 - peptidase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]

5.3e-35

68.5

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Query:  EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNND
        EEVDNS   +QRTSVFDRIKP TTR  VFQR+SM   E+ENQCPMST  R SAF+RLS+STSKK RPSTS FDRLK+TN+Q +R+M + K + F E N+D
Subjt:  EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNND

Query:  KKLHSSIPSRMKRKFSVLINTEGSLKV
         K+HS +PSRMKRK SV INTEGSL V
Subjt:  KKLHSSIPSRMKRKFSVLINTEGSLKV

KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]

3.1e-35

69.29

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Query:  EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNND
        EEVDNS   +QRTSVFDRIKP TTR SVFQR+S+T  E+ENQCP ST TR SAF+ LS+STSKK RPSTS FDRLK+ N+Q +R+M +LKV+ F E N+D
Subjt:  EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNND

Query:  KKLHSSIPSRMKRKFSVLINTEGSLKV
         K+HS +PSRMKRK SV INTEGSL V
Subjt:  KKLHSSIPSRMKRKFSVLINTEGSLKV

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]

1.8e-35

69.29

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Query:  EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNND
        EEVDNS   +QRTSVFDRIKP TTR SVFQR+SM   E+ENQCP ST  R SAF+RLS+STSKK RPSTS FDRLK+TN+Q +R+M +LK + F E N+D
Subjt:  EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNND

Query:  KKLHSSIPSRMKRKFSVLINTEGSLKV
         K+HS +PSRMKRK SV INTEGSL V
Subjt:  KKLHSSIPSRMKRKFSVLINTEGSLKV

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]

9.1e-35

67.72

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Query:  EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNND
        EEVDNS   +QRTSVFDRIKP TTR SVFQR+SM   E+ENQCPMST TR SAF+RLS+S SKK RPSTS FDRLK+TN+Q +R+M +LK + F E N+D
Subjt:  EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNND

Query:  KKLHSSIPSRMKRKFSVLINTEGSLKV
         K++S +PSR+KRK S+ INTEGSL V
Subjt:  KKLHSSIPSRMKRKFSVLINTEGSLKV

TYK16519.1 retrotransposon gag protein [Cucumis melo var. makuwa]

1.8e-35

69.29

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Query:  EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNND
        EEVDNS   +QRTSVFDRIKP TTR  VFQR+SM   E+ENQCP ST  R SAF+RLS+STSKK RPSTS FDRLK+TNNQ KR+M + K + F E N+D
Subjt:  EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNND

Query:  KKLHSSIPSRMKRKFSVLINTEGSLKV
         K+HS +PSRMKRK SV INTEGSL V
Subjt:  KKLHSSIPSRMKRKFSVLINTEGSLKV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SZJ7 Retrotransposon gag protein

2.6e-35

68.5

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Query:  EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNND
        EEVDNS   +QRTSVFDRIKP TTR  VFQR+SM   E+ENQCPMST  R SAF+RLS+STSKK RPSTS FDRLK+TN+Q +R+M + K + F E N+D
Subjt:  EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNND

Query:  KKLHSSIPSRMKRKFSVLINTEGSLKV
         K+HS +PSRMKRK SV INTEGSL V
Subjt:  KKLHSSIPSRMKRKFSVLINTEGSLKV

A0A5A7TGM1 Retrotransposon gag protein

1.5e-35

69.29

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Query:  EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNND
        EEVDNS   +QRTSVFDRIKP TTR SVFQR+S+T  E+ENQCP ST TR SAF+ LS+STSKK RPSTS FDRLK+ N+Q +R+M +LKV+ F E N+D
Subjt:  EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNND

Query:  KKLHSSIPSRMKRKFSVLINTEGSLKV
         K+HS +PSRMKRK SV INTEGSL V
Subjt:  KKLHSSIPSRMKRKFSVLINTEGSLKV

A0A5A7TQ06 Retrotransposon gag protein

8.9e-36

69.29

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Query:  EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNND
        EEVDNS   +QRTSVFDRIKP TTR SVFQR+SM   E+ENQCP ST  R SAF+RLS+STSKK RPSTS FDRLK+TN+Q +R+M +LK + F E N+D
Subjt:  EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNND

Query:  KKLHSSIPSRMKRKFSVLINTEGSLKV
         K+HS +PSRMKRK SV INTEGSL V
Subjt:  KKLHSSIPSRMKRKFSVLINTEGSLKV

A0A5A7U974 Retrotransposon gag protein

4.4e-35

67.72

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Query:  EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNND
        EEVDNS   +QRTSVFDRIKP TTR SVFQR+SM   E+ENQCPMST TR SAF+RLS+S SKK RPSTS FDRLK+TN+Q +R+M +LK + F E N+D
Subjt:  EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNND

Query:  KKLHSSIPSRMKRKFSVLINTEGSLKV
         K++S +PSR+KRK S+ INTEGSL V
Subjt:  KKLHSSIPSRMKRKFSVLINTEGSLKV

A0A5D3D209 Retrotransposon gag protein

8.9e-36

69.29

Show/hide

Query:  EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNND
        EEVDNS   +QRTSVFDRIKP TTR  VFQR+SM   E+ENQCP ST  R SAF+RLS+STSKK RPSTS FDRLK+TNNQ KR+M + K + F E N+D
Subjt:  EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNND

Query:  KKLHSSIPSRMKRKFSVLINTEGSLKV
         K+HS +PSRMKRK SV INTEGSL V
Subjt:  KKLHSSIPSRMKRKFSVLINTEGSLKV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGGTTCTACTGCCCATTGTTGCTTCAATGAATTGAGGTTGCAAGAAGATAAAGCTTCTATTATTGCAAGCGAAGAAACAACATTGCAGGGGGCATGTACCAACGACAA
GTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTAATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACA
TCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCACCTAAAGAGAAAAGAAAACTTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAAT
TCCAAGAATGATGAACAAAGGACTTCCGTCTTCGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGACCGCGACAGAAAAAGAAAATCA
ATGTCCGATGTCCACATCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTTTCCACATCGAAGAAAAGTCGGCCTTCAACATCTGTTTTTGATCGCCTTAAAGTAACAA
ACAACCAACCTAAAAGAAAGATGGACAACTTGAAGGTGAGACTTTTCGATGAAGTAAACAACGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTT
TCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTTCCCACGTTGCGCTATTGTGCTCCTTCCTTCTCCAAGTTCGAAGGTTCTGACGTTGCGTTGCTTCCTTCACCAAG
TTCGAAAGTTCTGACTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGTTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCTGCTTCGCTGCAGTTCCTTC
CTCCAATGCCTTCCTCCAAGTTCGAAGGTTCTCATGCTGCTTCTTCCTCATATTGCTTCGCTACAGTTCCTTCCTCCGAAGGTTCTAACGCTGCTTCTGCTTCCTCACGT
TGCTTTGTTGTTGTAACATCTCTAAATTCAAAGGTTCTCACGCTACGTTATTTGAAGTTCCTTCATCTTACACTGCATTGCATCGCTGTTCCTTCAACAAGTTCGAAGCG
ACAAAAGTCCAAGGAACATGTCCTTGTACTCATGCTGAAAGACGTGACAGCGGCAAAAGTTCAAGGAACATGTCCTGTACTCATGCTGAACGACGTGACAGCGGCAAAAG
TCCAAGGAACATGTCCTTGTACTCATGCTGAAAGACATGGCAGCGGTAAAGGAGCCCAAGTGGGAATGACATCATGTGTCCTTGGGCCAGAGGGCGTCGTAGCAACAAAA
GTCCAAAGACGTCATATGTCCTTGGATTAA

mRNA sequence

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Protein sequence

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MGSTAHCCFNELRLQEDKASIIASEETTLQGACTNDKFLVKYNPLFEPNSDVVTVMMTETRTMEERMAEMQEHINTLMKAIEEKDSQIEHLKRKENFATSYCIDVEEVDN
SKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNNDKKLHSSIPSRMKRKF
SVLINTEGSLKVPTLRYCAPSFSKFEGSDVALLPSPSSKVLTSFSKFEGSHVASLQFLLSKFEGSHAASLQFLPPMPSSKFEGSHAASSSYCFATVPSSEGSNAASASSR
CFVVVTSLNSKVLTLRYLKFLHLTLHCIAVPSTSSKRQKSKEHVLVLMLKDVTAAKVQGTCPVLMLNDVTAAKVQGTCPCTHAERHGSGKGAQVGMTSCVLGPEGVVATK
VQRRHMSLD

Spg011018 (gene) of Sponge gourd (cylindrica) v1 genome