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Spg011023 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011023
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold4:28448169..28451694
RNA-Seq ExpressionSpg011023
SyntenySpg011023
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025357.1 hypothetical protein E6C27_scaffold1204G00410 [Cucumis melo var. makuwa]9.3e-1850.39Show/hide
Query:  LFGLSYTEGIKRLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELP
        LFGLSY EG K         RP+GNR SLQTGELDKT   +          LSTLSVLRDND V                              VEIELP
Subjt:  LFGLSYTEGIKRLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELP

Query:  VPDTLPTSAESSRSSSSTWLELYIESVHI
        VPDTLPTSAES RS+S+TWLELY ES+H+
Subjt:  VPDTLPTSAESSRSSSSTWLELYIESVHI

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-2359.84Show/hide
Query:  RLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPT
        R++    L  PRGNR SLQT E+DKT             PLSTLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPT
Subjt:  RLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPT

Query:  SAESSRSSSSTWLELYIESVHI
        SAESSRS+SSTWLELY ESVH+
Subjt:  SAESSRSSSSTWLELYIESVHI

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.3e-3065.12Show/hide
Query:  IKRLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML---
        +++ NQKLYLV PRGNRSSLQTGELDKT              LSTLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML   
Subjt:  IKRLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML---

Query:  -------VEIELPVPDTLPTSAESSRSSS
               VEIEL VPDTLPTSAESS S+S
Subjt:  -------VEIELPVPDTLPTSAESSRSSS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]1.3e-3065.12Show/hide
Query:  IKRLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML---
        +++ NQKLYLV PRGNRSSLQTGELDKT              LSTLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML   
Subjt:  IKRLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML---

Query:  -------VEIELPVPDTLPTSAESSRSSS
               VEIEL VPDTLPTSAESS S+S
Subjt:  -------VEIELPVPDTLPTSAESSRSSS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-2359.84Show/hide
Query:  RLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPT
        R++    L  PRGNR SLQT E+DKT             PLSTLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPT
Subjt:  RLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPT

Query:  SAESSRSSSSTWLELYIESVHI
        SAESSRS+SSTWLELY ESVH+
Subjt:  SAESSRSSSSTWLELYIESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase9.4e-2459.84Show/hide
Query:  RLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPT
        R++    L  PRGNR SLQT E+DKT             PLSTLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPT
Subjt:  RLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPT

Query:  SAESSRSSSSTWLELYIESVHI
        SAESSRS+SSTWLELY ESVH+
Subjt:  SAESSRSSSSTWLELYIESVHI

A0A5A7VGQ5 Uncharacterized protein6.1e-3165.12Show/hide
Query:  IKRLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML---
        +++ NQKLYLV PRGNRSSLQTGELDKT              LSTLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML   
Subjt:  IKRLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML---

Query:  -------VEIELPVPDTLPTSAESSRSSS
               VEIEL VPDTLPTSAESS S+S
Subjt:  -------VEIELPVPDTLPTSAESSRSSS

A0A5D3BG85 Uncharacterized protein6.1e-3165.12Show/hide
Query:  IKRLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML---
        +++ NQKLYLV PRGNRSSLQTGELDKT              LSTLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML   
Subjt:  IKRLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML---

Query:  -------VEIELPVPDTLPTSAESSRSSS
               VEIEL VPDTLPTSAESS S+S
Subjt:  -------VEIELPVPDTLPTSAESSRSSS

A0A5D3BTP3 Reverse transcriptase9.4e-2459.84Show/hide
Query:  RLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPT
        R++    L  PRGNR SLQT E+DKT             PLSTLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPT
Subjt:  RLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPT

Query:  SAESSRSSSSTWLELYIESVHI
        SAESSRS+SSTWLELY ESVH+
Subjt:  SAESSRSSSSTWLELYIESVHI

A0A5D3DIM8 Uncharacterized protein4.5e-1850.39Show/hide
Query:  LFGLSYTEGIKRLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELP
        LFGLSY EG K         RP+GNR SLQTGELDKT   +          LSTLSVLRDND V                              VEIELP
Subjt:  LFGLSYTEGIKRLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELP

Query:  VPDTLPTSAESSRSSSSTWLELYIESVHI
        VPDTLPTSAES RS+S+TWLELY ES+H+
Subjt:  VPDTLPTSAESSRSSSSTWLELYIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACGCGGCTTGTTGCCCAAGAAATGGACAGCGTCGCGACGTTGTCTTCACAGCGTCTCGACGCTGTGCCATTTTCCAGCAATTCCAGCTTCGGGGAAAAGCTCATGC
AAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTTGAATCAGAAGCTCTATTTGGTAA
GGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTA
CTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTT
AGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAA
ATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCACGCGGCTTGTTGCCCAAGAAATGGACAGCGTCGCGACGTTGTCTTCACAGCGTCTCGACGCTGTGCCATTTTCCAGCAATTCCAGCTTCGGGGAAAAGCTCATGC
AAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTTGAATCAGAAGCTCTATTTGGTAA
GGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTA
CTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTT
AGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAA
ATGTTTTGTAA
Protein sequenceShow/hide protein sequence
MHAACCPRNGQRRDVVFTASRRCAIFQQFQLRGKAHAKPAIAGSEINLSTSGFLFGLSYTEGIKRLNQKLYLVRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSV
LRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIESVHIVNVL