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Spg011048 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011048
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold4:25474606..25476935
RNA-Seq ExpressionSpg011048
SyntenySpg011048
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-2355.91Show/hide
Query:  VYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ------------TRFSVSIGSTG
        V+K NQKLYLV           ++ ++  SVLR     +  VEIELPVPDTLPTSAES  S+SSTWLELY ESV  +                +++GS G
Subjt:  VYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ------------TRFSVSIGSTG

Query:  IVRGDDVCWLHAVFRAKLAGGPGGGVT
        IVRGDDVCWLHAVFRAK AGGPGGGVT
Subjt:  IVRGDDVCWLHAVFRAKLAGGPGGGVT

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]6.3e-2454.17Show/hide
Query:  VYKLNQKLYL-----------VSCR----VFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLELYIESV-----------
        V+K NQKLYL           V  R      ++ E D   I   S L  L   +  VEIELPVPDTLPTSAESS S+SSTWLELY ESV           
Subjt:  VYKLNQKLYL-----------VSCR----VFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLELYIESV-----------

Query:  ---TFQTRFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
                FSV +GSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  ---TFQTRFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]6.5e-3742.34Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFFIRFE---------LH
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW                      VQ  N   +   E         + 
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFFIRFE---------LH

Query:  RRN---------------------------------------------QEHSGVYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELP
        R N                                             +++  V  + Q  Y     V     + V  +N G   R L  ++  +EIEL 
Subjt:  RRN---------------------------------------------QEHSGVYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELP

Query:  VPDTLPTSAESSRSSSSTWLELYIE------SVTFQTRFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        VPDTLPTSAESS S+SSTWLE   E       V   +R    + S GIVR +DVCWLHAVFRAK+AGG GGGVT
Subjt:  VPDTLPTSAESSRSSSSTWLELYIE------SVTFQTRFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]6.7e-2646.86Show/hide
Query:  TVNLWFFIRFELHRRNQEHSG-------------------VYKLNQKLYL------VSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPT
        TVNLWF +    +    + +G                   ++KLNQKLYL      +S +  E ++  ++ ++  SVLR     +    IELPVPDTLPT
Subjt:  TVNLWFFIRFELHRRNQEHSG-------------------VYKLNQKLYL------VSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPT

Query:  SAESSRSSSSTWLELYIESV------TFQTR--------FSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        SAESS S+SSTWLELY ESV      +F  +        F+VS+GSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  SAESSRSSSSTWLELYIESV------TFQTR--------FSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]6.3e-2454.17Show/hide
Query:  VYKLNQKLYL-----------VSCR----VFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLELYIESV-----------
        V+K NQKLYL           V  R      ++ E D   I   S L  L   +  VEIELPVPDTLPTSAESS S+SSTWLELY ESV           
Subjt:  VYKLNQKLYL-----------VSCR----VFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLELYIESV-----------

Query:  ---TFQTRFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
                FSV +GSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  ---TFQTRFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7UT17 CCHC-type domain-containing protein1.2e-2343.16Show/hide
Query:  TVNLWFFIRFELHRRNQEHSG-------------------VYKLNQKLYLV---------------------SCRVFENEEFDVYFINFGSVLRKLWVLE
        TVNLWF +    +    + +G                   ++K NQKLYLV                     S +  E ++  ++ ++  SVLR     +
Subjt:  TVNLWFFIRFELHRRNQEHSG-------------------VYKLNQKLYLV---------------------SCRVFENEEFDVYFINFGSVLRKLWVLE

Query:  VRVEIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
          V IELPVPD LPTSAESS S+SSTWLELY ESV      +F  +        F+VS+GSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  VRVEIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5A7V9N3 Reverse transcriptase3.1e-2454.17Show/hide
Query:  VYKLNQKLYL-----------VSCR----VFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLELYIESV-----------
        V+K NQKLYL           V  R      ++ E D   I   S L  L   +  VEIELPVPDTLPTSAESS S+SSTWLELY ESV           
Subjt:  VYKLNQKLYL-----------VSCR----VFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLELYIESV-----------

Query:  ---TFQTRFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
                FSV +GSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  ---TFQTRFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3CAC6 Uncharacterized protein3.1e-3742.34Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFFIRFE---------LH
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW                      VQ  N   +   E         + 
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFFIRFE---------LH

Query:  RRN---------------------------------------------QEHSGVYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELP
        R N                                             +++  V  + Q  Y     V     + V  +N G   R L  ++  +EIEL 
Subjt:  RRN---------------------------------------------QEHSGVYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELP

Query:  VPDTLPTSAESSRSSSSTWLELYIE------SVTFQTRFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        VPDTLPTSAESS S+SSTWLE   E       V   +R    + S GIVR +DVCWLHAVFRAK+AGG GGGVT
Subjt:  VPDTLPTSAESSRSSSSTWLELYIE------SVTFQTRFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3CJX3 CCHC-type domain-containing protein3.3e-2646.86Show/hide
Query:  TVNLWFFIRFELHRRNQEHSG-------------------VYKLNQKLYL------VSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPT
        TVNLWF +    +    + +G                   ++KLNQKLYL      +S +  E ++  ++ ++  SVLR     +    IELPVPDTLPT
Subjt:  TVNLWFFIRFELHRRNQEHSG-------------------VYKLNQKLYL------VSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPT

Query:  SAESSRSSSSTWLELYIESV------TFQTR--------FSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        SAESS S+SSTWLELY ESV      +F  +        F+VS+GSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  SAESSRSSSSTWLELYIESV------TFQTR--------FSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3DSY7 Putative Retrotransposon protein3.1e-2454.17Show/hide
Query:  VYKLNQKLYL-----------VSCR----VFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLELYIESV-----------
        V+K NQKLYL           V  R      ++ E D   I   S L  L   +  VEIELPVPDTLPTSAESS S+SSTWLELY ESV           
Subjt:  VYKLNQKLYL-----------VSCR----VFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLELYIESV-----------

Query:  ---TFQTRFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
                FSV +GSTGIVRGDDVCWLHAVFRAK  GGPGGGVT
Subjt:  ---TFQTRFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGAT
GTGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTGTGGGTGTTGGAAGTTAGGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTC
TAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCT
GTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACACAAAGGCATCGACCGGAGTGCTTGGACACCATCTTTGGAGTCAAACGAGTT
GATCAAGAAATTGCACAATTTTGGCAAACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGAT
GTGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTGTGGGTGTTGGAAGTTAGGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTC
TAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCT
GTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACACAAAGGCATCGACCGGAGTGCTTGGACACCATCTTTGGAGTCAAACGAGTT
GATCAAGAAATTGCACAATTTTGGCAAACCTGA
Protein sequenceShow/hide protein sequence
MDSTKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEHSGVYKLNQKLYLVSCRVFENEEFD
VYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTQRHRPECLDTIFGVKRV
DQEIAQFWQT