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Spg011068 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011068
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold4:25213659..25215467
RNA-Seq ExpressionSpg011068
SyntenySpg011068
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]4.1e-2152.1Show/hide
Query:  WPRGNRSSLQTKELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVQEGQRVS----------LEEDDVR
        WPRGNR  LQT ELDK                  VEIELP+PDTLPTSAESS S+S+TW+ELY ESV+   + +   + +  S          +  DDV 
Subjt:  WPRGNRSSLQTKELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVQEGQRVS----------LEEDDVR

Query:  WLHAIFRAKLAGGPGGGVT
        WLHAIFRAK AGGPGGGVT
Subjt:  WLHAIFRAKLAGGPGGGVT

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]7.1e-2159.41Show/hide
Query:  PRGNRSSLQTKELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVQEGQRVS-----------LEEDDVRWLHAIFRAKLAGGPGGG
        PRGNR +L T +LDKTVEIELPVPDTLPTSAESS+S+S+TW+ELY ESV +V +LF      RV+           +  DD+ WLHA+F AK AG PGGG
Subjt:  PRGNRSSLQTKELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVQEGQRVS-----------LEEDDVRWLHAIFRAKLAGGPGGG

Query:  V
        V
Subjt:  V

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]5.4e-2152.94Show/hide
Query:  PRGNRSSLQTKELDKT---------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVQEGQRVSLEEDDVR
        PRGNR SLQT+ELDKT               V IELPVPD LPTSAESS S+S+TW+ELY ESV+              ++++FNV  G    +  DDV 
Subjt:  PRGNRSSLQTKELDKT---------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVQEGQRVSLEEDDVR

Query:  WLHAIFRAKLAGGPGGGVT
        WLHA+FRAK  GGPGGGVT
Subjt:  WLHAIFRAKLAGGPGGGVT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.9e-2153.72Show/hide
Query:  LWPRGNRSSLQTKELDKTV---------------EIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVQEGQRVSLEEDD
        L PRGNR SLQT ELDKTV                IELPVPDTLPTSAESS S+S+TW+ELY ESV+              ++++FNV  G    +  DD
Subjt:  LWPRGNRSSLQTKELDKTV---------------EIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVQEGQRVSLEEDD

Query:  VRWLHAIFRAKLAGGPGGGVT
        V WLHA+FRAK  GGPGGGVT
Subjt:  VRWLHAIFRAKLAGGPGGGVT

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]4.1e-2152.1Show/hide
Query:  WPRGNRSSLQTKELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVQEGQRVS----------LEEDDVR
        WPRGNR  LQT ELDK                  VEIELP+PDTLPTSAESS S+S+TW+ELY ESV+   + +   + +  S          +  DDV 
Subjt:  WPRGNRSSLQTKELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVQEGQRVS----------LEEDDVR

Query:  WLHAIFRAKLAGGPGGGVT
        WLHAIFRAK AGGPGGGVT
Subjt:  WLHAIFRAKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein2.0e-2152.1Show/hide
Query:  WPRGNRSSLQTKELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVQEGQRVS----------LEEDDVR
        WPRGNR  LQT ELDK                  VEIELP+PDTLPTSAESS S+S+TW+ELY ESV+   + +   + +  S          +  DDV 
Subjt:  WPRGNRSSLQTKELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVQEGQRVS----------LEEDDVR

Query:  WLHAIFRAKLAGGPGGGVT
        WLHAIFRAK AGGPGGGVT
Subjt:  WLHAIFRAKLAGGPGGGVT

A0A5A7UAH6 CCHC-type domain-containing protein3.4e-2159.41Show/hide
Query:  PRGNRSSLQTKELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVQEGQRVS-----------LEEDDVRWLHAIFRAKLAGGPGGG
        PRGNR +L T +LDKTVEIELPVPDTLPTSAESS+S+S+TW+ELY ESV +V +LF      RV+           +  DD+ WLHA+F AK AG PGGG
Subjt:  PRGNRSSLQTKELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVQEGQRVS-----------LEEDDVRWLHAIFRAKLAGGPGGG

Query:  V
        V
Subjt:  V

A0A5A7UT17 CCHC-type domain-containing protein2.6e-2152.94Show/hide
Query:  PRGNRSSLQTKELDKT---------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVQEGQRVSLEEDDVR
        PRGNR SLQT+ELDKT               V IELPVPD LPTSAESS S+S+TW+ELY ESV+              ++++FNV  G    +  DDV 
Subjt:  PRGNRSSLQTKELDKT---------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVQEGQRVSLEEDDVR

Query:  WLHAIFRAKLAGGPGGGVT
        WLHA+FRAK  GGPGGGVT
Subjt:  WLHAIFRAKLAGGPGGGVT

A0A5D3CJX3 CCHC-type domain-containing protein9.0e-2253.72Show/hide
Query:  LWPRGNRSSLQTKELDKTV---------------EIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVQEGQRVSLEEDD
        L PRGNR SLQT ELDKTV                IELPVPDTLPTSAESS S+S+TW+ELY ESV+              ++++FNV  G    +  DD
Subjt:  LWPRGNRSSLQTKELDKTV---------------EIELPVPDTLPTSAESSRSSSNTWVELYIESVYY-------------VNVLFNVQEGQRVSLEEDD

Query:  VRWLHAIFRAKLAGGPGGGVT
        V WLHA+FRAK  GGPGGGVT
Subjt:  VRWLHAIFRAKLAGGPGGGVT

A0A5D3DR18 Gag/pol protein2.0e-2152.1Show/hide
Query:  WPRGNRSSLQTKELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVQEGQRVS----------LEEDDVR
        WPRGNR  LQT ELDK                  VEIELP+PDTLPTSAESS S+S+TW+ELY ESV+   + +   + +  S          +  DDV 
Subjt:  WPRGNRSSLQTKELDK-----------------TVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVQEGQRVS----------LEEDDVR

Query:  WLHAIFRAKLAGGPGGGVT
        WLHAIFRAK AGGPGGGVT
Subjt:  WLHAIFRAKLAGGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAAGGAACTAGATAAGACAGTAGAGATCGAGCT
CCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTCAACG
TTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACACAATTTGCA
TTAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAAGGAACTAGATAAGACAGTAGAGATCGAGCT
CCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTCAACG
TTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACACAATTTGCA
TTAATTTGA
Protein sequenceShow/hide protein sequence
MENRAQDFRAKQEDLWPRGNRSSLQTKELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTQFA
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