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Spg011089 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011089
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold4:25430030..25432299
RNA-Seq ExpressionSpg011089
SyntenySpg011089
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]5.1e-2243.75Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRALRLKKIGKSSCKASHCRIWVQTVNLWFFI------RFELHRRNQEVSCRVFENEEFD
        TKPTTD  IFQ NFI FLHHF  KLSE+F+ERVK EEEEEFR LRLKK+ K   ++   +    T+NLWF +         +  R    S +  + ++  
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRALRLKKIGKSSCKASHCRIWVQTVNLWFFI------RFELHRRNQEVSCRVFENEEFD

Query:  VYFINFGSVLRKLWVLEV--------RVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTG
        ++ ++  SVLR    + +        +VEIELPMPDTLPT AES  S+SS                Y  NQVMSGLH V    F++S+G TG
Subjt:  VYFINFGSVLRKLWVLEV--------RVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTG

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.6e-2278.95Show/hide
Query:  VEIELPMPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        VEIEL +PDTLPTSAES  S+SSYF NQVMSGLH V    F+VS+GSTGIVRGDDVC LH VFRAK AGGPGGGVT
Subjt:  VEIELPMPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]3.0e-2277.33Show/hide
Query:  VEIELPMPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
        VEIELP+PDTLPTS ESS S+SSYF NQVMSGLH V    F++S+ STGIVRGDDVCWLHAVFRAK  GGP GGV
Subjt:  VEIELPMPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]1.0e-3038.57Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRALRLKKIGKSSCKASHCRIW----------------------VQTVNLWFF---------------
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFR LRLKKIGKSSCKA+HCRIW                      VQ  N   +               
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRALRLKKIGKSSCKASHCRIW----------------------VQTVNLWFF---------------

Query:  --------------IRFELHRRNQEVSCRVF------------------ENE--------------------EFDVYFINFGSVLRKLWVLEVRVEIELP
                      I   +    + +S R++                  +N+                     + V  +N G   R L  ++  +EIEL 
Subjt:  --------------IRFELHRRNQEVSCRVF------------------ENE--------------------EFDVYFINFGSVLRKLWVLEVRVEIELP

Query:  MPDTLPTSAESSRSSSS----------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        +PDTLPTSAESS S+SS          Y P+ V +        R    + S GIVR +DVCWLHAVFRAK+AGG GGGVT
Subjt:  MPDTLPTSAESSRSSSS----------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]3.9e-2249.32Show/hide
Query:  ELHRRNQE---------VSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHV
        E+H+ NQ+         +S +  E ++  ++ ++  SVLR     +    IELP+PDTLPTSAESS S+SS                 F NQVMS LH V
Subjt:  ELHRRNQE---------VSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHV

Query:  YVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQSS
            F+VS+GSTGIVRGDDVCWLHAVFRAK  GGPGGGVTTW  S+
Subjt:  YVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQSS

TrEMBL top hitse value%identityAlignment
A0A5A7UGD0 Uncharacterized protein2.5e-2243.75Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRALRLKKIGKSSCKASHCRIWVQTVNLWFFI------RFELHRRNQEVSCRVFENEEFD
        TKPTTD  IFQ NFI FLHHF  KLSE+F+ERVK EEEEEFR LRLKK+ K   ++   +    T+NLWF +         +  R    S +  + ++  
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRALRLKKIGKSSCKASHCRIWVQTVNLWFFI------RFELHRRNQEVSCRVFENEEFD

Query:  VYFINFGSVLRKLWVLEV--------RVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTG
        ++ ++  SVLR    + +        +VEIELPMPDTLPT AES  S+SS                Y  NQVMSGLH V    F++S+G TG
Subjt:  VYFINFGSVLRKLWVLEV--------RVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFSVSIGSTG

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein3.2e-2278.95Show/hide
Query:  VEIELPMPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        VEIEL +PDTLPTSAES  S+SSYF NQVMSGLH V    F+VS+GSTGIVRGDDVC LH VFRAK AGGPGGGVT
Subjt:  VEIELPMPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3BMJ4 Retrotrans_gag domain-containing protein1.4e-2277.33Show/hide
Query:  VEIELPMPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
        VEIELP+PDTLPTS ESS S+SSYF NQVMSGLH V    F++S+ STGIVRGDDVCWLHAVFRAK  GGP GGV
Subjt:  VEIELPMPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

A0A5D3CAC6 Uncharacterized protein4.9e-3138.57Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRALRLKKIGKSSCKASHCRIW----------------------VQTVNLWFF---------------
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFR LRLKKIGKSSCKA+HCRIW                      VQ  N   +               
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRALRLKKIGKSSCKASHCRIW----------------------VQTVNLWFF---------------

Query:  --------------IRFELHRRNQEVSCRVF------------------ENE--------------------EFDVYFINFGSVLRKLWVLEVRVEIELP
                      I   +    + +S R++                  +N+                     + V  +N G   R L  ++  +EIEL 
Subjt:  --------------IRFELHRRNQEVSCRVF------------------ENE--------------------EFDVYFINFGSVLRKLWVLEVRVEIELP

Query:  MPDTLPTSAESSRSSSS----------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        +PDTLPTSAESS S+SS          Y P+ V +        R    + S GIVR +DVCWLHAVFRAK+AGG GGGVT
Subjt:  MPDTLPTSAESSRSSSS----------YFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3CJX3 CCHC-type domain-containing protein1.9e-2249.32Show/hide
Query:  ELHRRNQE---------VSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHV
        E+H+ NQ+         +S +  E ++  ++ ++  SVLR     +    IELP+PDTLPTSAESS S+SS                 F NQVMS LH V
Subjt:  ELHRRNQE---------VSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHV

Query:  YVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQSS
            F+VS+GSTGIVRGDDVCWLHAVFRAK  GGPGGGVTTW  S+
Subjt:  YVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGCTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTG
TGGGTGTTGGAAGTTAGGGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTC
AGGGCTGCACCATGTGTATGTTGAAAGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAG
CAGGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGCTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTG
TGGGTGTTGGAAGTTAGGGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTC
AGGGCTGCACCATGTGTATGTTGAAAGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAG
CAGGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
MDSTKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRALRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEVSCRVFENEEFDVYFINFGSVLRKL
WVLEVRVEIELPMPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQSS