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Spg011113 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011113
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold4:25043946..25044876
RNA-Seq ExpressionSpg011113
SyntenySpg011113
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]3.9e-2156.73Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS ++ +TW+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPG

Query:  GGVT
          VT
Subjt:  GGVT

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-1757.95Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT
        VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGGVT
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-2259.81Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+              + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA

Query:  GGPGGGV
        GGPGGGV
Subjt:  GGPGGGV

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.3e-1952.54Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   ++SSTW+ELY+ESVH+  + +             EG    +  DDV W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRW

Query:  LHAIFRAKLAGGPGGGVT
        LHA+FRAK AGGP GGVT
Subjt:  LHAIFRAKLAGGPGGGVT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-2259.81Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+              + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA

Query:  GGPGGGV
        GGPGGGV
Subjt:  GGPGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein1.9e-2156.73Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS ++ +TW+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPG

Query:  GGVT
          VT
Subjt:  GGVT

A0A5A7V9N3 Reverse transcriptase5.7e-1857.95Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT
        VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGGVT
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVT

A0A5A7VMG9 Reverse transcriptase1.0e-2259.81Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+              + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA

Query:  GGPGGGV
        GGPGGGV
Subjt:  GGPGGGV

A0A5D3CCC7 DNA/RNA polymerases superfamily protein6.1e-2052.54Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   ++SSTW+ELY+ESVH+  + +             EG    +  DDV W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRW

Query:  LHAIFRAKLAGGPGGGVT
        LHA+FRAK AGGP GGVT
Subjt:  LHAIFRAKLAGGPGGGVT

A0A5D3DX39 Reverse transcriptase1.0e-2259.81Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+              + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA

Query:  GGPGGGV
        GGPGGGV
Subjt:  GGPGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAATTCAAGTCCCCGGCAACAGCGAAAAAACTTGTTGGGCTCCTAGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAATTCAAGTCCCCGGCAACAGCGAAAAAACTTGTTGGGCTCCTAGA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTIQVPGNSEKTCWAPR