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Spg011117 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011117
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationscaffold4:26758897..26760826
RNA-Seq ExpressionSpg011117
SyntenySpg011117
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]4.7e-0776.32Show/hide
Query:  GESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFR
        GESGQ  DSI L F GQDR+GSWEHN TRWN LLP FR
Subjt:  GESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFR
KAA0026228.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.9e-0472.41Show/hide
Query:  ISLPFWGQDRVGSWEHNRTRWNSLLPDFR
        + L  WGQD+VGSWEHN  RWNSL+PDFR
Subjt:  ISLPFWGQDRVGSWEHNRTRWNSLLPDFR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]2.3e-0964.58Show/hide
Query:  ESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFREADESGVTDTR
        ESGQ ADS+ L FWGQDRV SWEHN TRWNSLLP FRE  +  + + +
Subjt:  ESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFREADESGVTDTR
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]5.1e-0976.92Show/hide
Query:  GESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFRE
        GESGQ  DSI L FWGQDRVGSWEHN TRWNS +P FR+
Subjt:  GESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFRE
TYK30723.1 hypothetical protein E5676_scaffold343G00550 [Cucumis melo var. makuwa]2.9e-0472.41Show/hide
Query:  ISLPFWGQDRVGSWEHNRTRWNSLLPDFR
        + L  WGQD+VGSWEHN  RWNSL+PDFR
Subjt:  ISLPFWGQDRVGSWEHNRTRWNSLLPDFR
TrEMBL top hitse value%identityAlignment
A0A5A7SJB7 Ty3-gypsy retrotransposon protein1.4e-0472.41Show/hide
Query:  ISLPFWGQDRVGSWEHNRTRWNSLLPDFR
        + L  WGQD+VGSWEHN  RWNSL+PDFR
Subjt:  ISLPFWGQDRVGSWEHNRTRWNSLLPDFR
A0A5A7SPG1 Pol protein2.3e-0776.32Show/hide
Query:  GESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFR
        GESGQ  DSI L F GQDR+GSWEHN TRWN LLP FR
Subjt:  GESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFR
A0A5A7U2P4 Integrase catalytic domain-containing protein1.1e-0964.58Show/hide
Query:  ESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFREADESGVTDTR
        ESGQ ADS+ L FWGQDRV SWEHN TRWNSLLP FRE  +  + + +
Subjt:  ESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFREADESGVTDTR
A0A5D3C3J6 Gag/pol protein2.5e-0976.92Show/hide
Query:  GESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFRE
        GESGQ  DSI L FWGQDRVGSWEHN TRWNS +P FR+
Subjt:  GESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFRE
A0A5D3E3M6 Uncharacterized protein1.4e-0472.41Show/hide
Query:  ISLPFWGQDRVGSWEHNRTRWNSLLPDFR
        + L  WGQD+VGSWEHN  RWNSL+PDFR
Subjt:  ISLPFWGQDRVGSWEHNRTRWNSLLPDFR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGGCCAATACGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGA
CTTTAGGGAAGCAGATGAGTCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTATATCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGC
AACTGTCCATTAGGTCCCACTGCGATTATAAGACAAGGAGGCTGCTGCGTTTTCGATCGTTGGAGCGTCGTTGGCAAAGAACGGTCAAGTCTACAACGAAGATTCTGCCT
TCAGACGCAACAGCGTCGGGACGCTACTCCAACAGCGTCTCGACGCTGTCTCGATACCGCAGGCGCTCAGATAAGGAAAGCGCACAGCGTCGGGACGCTGCGATTATAGC
GTCTCGACGCTGTCACGATGACGGCGCT
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGGCCAATACGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGA
CTTTAGGGAAGCAGATGAGTCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTATATCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGC
AACTGTCCATTAGGTCCCACTGCGATTATAAGACAAGGAGGCTGCTGCGTTTTCGATCGTTGGAGCGTCGTTGGCAAAGAACGGTCAAGTCTACAACGAAGATTCTGCCT
TCAGACGCAACAGCGTCGGGACGCTACTCCAACAGCGTCTCGACGCTGTCTCGATACCGCAGGCGCTCAGATAAGGAAAGCGCACAGCGTCGGGACGCTGCGATTATAGC
GTCTCGACGCTGTCACGATGACGGCGCT
Protein sequenceShow/hide protein sequence
MGESGQYADSISLPFWGQDRVGSWEHNRTRWNSLLPDFREADESGVTDTREGLTSRYWSISVDTENMSAVRRVQLSIRSHCDYKTRRLLRFRSLERRWQRTVKSTTKILP
SDATASGRYSNSVSTLSRYRRRSDKESAQRRDAAIIASRRCHDDGA