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Spg011144 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011144
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold4:29205798..29209014
RNA-Seq ExpressionSpg011144
SyntenySpg011144
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.8e-1142.57Show/hide
Query:  LMVYGV----LEEASGLQIGLRFEHRIFEQSRRISSFLWCFDHSGLSRGNRSSLQTRKLAKT-----------------VEIELPMPDTLPTSAESSRTS
        +  YG+    LEE + L +G R E    E+ R   S  W        RGNR SLQT +L KT                 VEIELPMPDTLPTSAESS ++
Subjt:  LMVYGV----LEEASGLQIGLRFEHRIFEQSRRISSFLWCFDHSGLSRGNRSSLQTRKLAKT-----------------VEIELPMPDTLPTSAESSRTS

Query:  SSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLVGGPGGGVI
        SS+  +   E   V        +  DDV WLHA+FR K  GGPGGGV+
Subjt:  SSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLVGGPGGGVI

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]5.2e-1145.1Show/hide
Query:  LSRGNRSSLQTRKLAKTVEIELPMPDTLPTSAESSRTSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLVGGPGGG
        L RGNR +L T KL KTVEIELP+PDTLPTSAESS+++SS+  +                          EG    +  DD+ WLHA+F  K  G PGGG
Subjt:  LSRGNRSSLQTRKLAKTVEIELPMPDTLPTSAESSRTSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLVGGPGGG

Query:  VI
        V+
Subjt:  VI

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]2.2e-0941.32Show/hide
Query:  SGLSRGNRSSLQTRKLAKT---------------VEIELPMPDTLPTSAESSRTSSSSTFQ-----------------------------EGQRVSLEED
        SG+ RGNR SLQTR+L KT               V IELP+PD LPTSAESS ++SS+  +                              G    +  D
Subjt:  SGLSRGNRSSLQTRKLAKT---------------VEIELPMPDTLPTSAESSRTSSSSTFQ-----------------------------EGQRVSLEED

Query:  DVRWLHAIFRTKLVGGPGGGV
        DV WLHA+FR K VGGPGGGV
Subjt:  DVRWLHAIFRTKLVGGPGGGV

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]6.8e-1153.33Show/hide
Query:  RGNRSSLQTRKLAKT-----------------VEIELPMPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLVGGPGGGV
        RGNR SLQT KL KT                 VEIELP+PDTLPTSAES  ++S ST        +  DDV WLHA+FR K  GGPGGGV
Subjt:  RGNRSSLQTRKLAKT-----------------VEIELPMPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLVGGPGGGV

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.8e-1142.57Show/hide
Query:  LMVYGV----LEEASGLQIGLRFEHRIFEQSRRISSFLWCFDHSGLSRGNRSSLQTRKLAKT-----------------VEIELPMPDTLPTSAESSRTS
        +  YG+    LEE + L +G R E    E+ R   S  W        RGNR SLQT +L KT                 VEIELPMPDTLPTSAESS ++
Subjt:  LMVYGV----LEEASGLQIGLRFEHRIFEQSRRISSFLWCFDHSGLSRGNRSSLQTRKLAKT-----------------VEIELPMPDTLPTSAESSRTS

Query:  SSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLVGGPGGGVI
        SS+  +   E   V        +  DDV WLHA+FR K  GGPGGGV+
Subjt:  SSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLVGGPGGGVI

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase8.7e-1242.57Show/hide
Query:  LMVYGV----LEEASGLQIGLRFEHRIFEQSRRISSFLWCFDHSGLSRGNRSSLQTRKLAKT-----------------VEIELPMPDTLPTSAESSRTS
        +  YG+    LEE + L +G R E    E+ R   S  W        RGNR SLQT +L KT                 VEIELPMPDTLPTSAESS ++
Subjt:  LMVYGV----LEEASGLQIGLRFEHRIFEQSRRISSFLWCFDHSGLSRGNRSSLQTRKLAKT-----------------VEIELPMPDTLPTSAESSRTS

Query:  SSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLVGGPGGGVI
        SS+  +   E   V        +  DDV WLHA+FR K  GGPGGGV+
Subjt:  SSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLVGGPGGGVI

A0A5A7UAH6 CCHC-type domain-containing protein2.5e-1145.1Show/hide
Query:  LSRGNRSSLQTRKLAKTVEIELPMPDTLPTSAESSRTSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLVGGPGGG
        L RGNR +L T KL KTVEIELP+PDTLPTSAESS+++SS+  +                          EG    +  DD+ WLHA+F  K  G PGGG
Subjt:  LSRGNRSSLQTRKLAKTVEIELPMPDTLPTSAESSRTSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLVGGPGGG

Query:  VI
        V+
Subjt:  VI

A0A5A7UT17 CCHC-type domain-containing protein1.1e-0941.32Show/hide
Query:  SGLSRGNRSSLQTRKLAKT---------------VEIELPMPDTLPTSAESSRTSSSSTFQ-----------------------------EGQRVSLEED
        SG+ RGNR SLQTR+L KT               V IELP+PD LPTSAESS ++SS+  +                              G    +  D
Subjt:  SGLSRGNRSSLQTRKLAKT---------------VEIELPMPDTLPTSAESSRTSSSSTFQ-----------------------------EGQRVSLEED

Query:  DVRWLHAIFRTKLVGGPGGGV
        DV WLHA+FR K VGGPGGGV
Subjt:  DVRWLHAIFRTKLVGGPGGGV

A0A5D3BAD1 Retrotrans_gag domain-containing protein3.3e-1153.33Show/hide
Query:  RGNRSSLQTRKLAKT-----------------VEIELPMPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLVGGPGGGV
        RGNR SLQT KL KT                 VEIELP+PDTLPTSAES  ++S ST        +  DDV WLHA+FR K  GGPGGGV
Subjt:  RGNRSSLQTRKLAKT-----------------VEIELPMPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLVGGPGGGV

A0A5D3D150 Reverse transcriptase8.7e-1242.57Show/hide
Query:  LMVYGV----LEEASGLQIGLRFEHRIFEQSRRISSFLWCFDHSGLSRGNRSSLQTRKLAKT-----------------VEIELPMPDTLPTSAESSRTS
        +  YG+    LEE + L +G R E    E+ R   S  W        RGNR SLQT +L KT                 VEIELPMPDTLPTSAESS ++
Subjt:  LMVYGV----LEEASGLQIGLRFEHRIFEQSRRISSFLWCFDHSGLSRGNRSSLQTRKLAKT-----------------VEIELPMPDTLPTSAESSRTS

Query:  SSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLVGGPGGGVI
        SS+  +   E   V        +  DDV WLHA+FR K  GGPGGGV+
Subjt:  SSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLVGGPGGGVI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCAGGCCGAGCAGCTTTTGCCAATCAGCGATGGATTTGATGGTGTATGGCGTCCTTGAGGAGGCAAGCGGCCTTCAAATCGGTCTCCGTTTCGAGCACAGGATTTT
CGAGCAAAGCAGGAGGATCTCTAGTTTCCTCTGGTGTTTCGATCATTCTGGGTTGTCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTAGAGA
TCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAAGACGATGTT
CGTTGGCTTCACGCCATCTTCCGAACTAAGCTAGTAGGTGGTCCGGGAGGGGGTGTGATAGTTATCAATATAATATATGTAACGCCCCAGGCCCAGGATTTGGAATCCGA
ATTCGGCACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCAGGCCGAGCAGCTTTTGCCAATCAGCGATGGATTTGATGGTGTATGGCGTCCTTGAGGAGGCAAGCGGCCTTCAAATCGGTCTCCGTTTCGAGCACAGGATTTT
CGAGCAAAGCAGGAGGATCTCTAGTTTCCTCTGGTGTTTCGATCATTCTGGGTTGTCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTAGAGA
TCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAAGACGATGTT
CGTTGGCTTCACGCCATCTTCCGAACTAAGCTAGTAGGTGGTCCGGGAGGGGGTGTGATAGTTATCAATATAATATATGTAACGCCCCAGGCCCAGGATTTGGAATCCGA
ATTCGGCACCTAA
Protein sequenceShow/hide protein sequence
MVRPSSFCQSAMDLMVYGVLEEASGLQIGLRFEHRIFEQSRRISSFLWCFDHSGLSRGNRSSLQTRKLAKTVEIELPMPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDV
RWLHAIFRTKLVGGPGGGVIVINIIYVTPQAQDLESEFGT