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Spg011147 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011147
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold4:24824948..24834614
RNA-Seq ExpressionSpg011147
SyntenySpg011147
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037514.1 reverse transcriptase [Cucumis melo var. makuwa]3.2e-1965.59Show/hide
Query:  QVESEALLGMVGKLIQFPTTSMKIWPRGNRSSLQTRELAKT-----------------VEIELSVPDTLPTSAESSRSSSSTWVELYIESVHI
        QVESEA LG VGKLIQ+PTT MKI PRGNR SLQTREL KT                 VEIEL VPDTLPTS ES  S+SSTW+ELY ESVH+
Subjt:  QVESEALLGMVGKLIQFPTTSMKIWPRGNRSSLQTRELAKT-----------------VEIELSVPDTLPTSAESSRSSSSTWVELYIESVHI

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.9e-1950.86Show/hide
Query:  ESEALLGMVGKLIQFPTTSMKIWPRGNRSSLQTRELAKTVEIELSVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLFN----------IQEGQRISLE
        ES   L   G  + F + ++ I PRGNR +L T +L KTVEIEL VPDTLPTSAESS+S+SSTW+ELY ESVH+  + +             EG    + 
Subjt:  ESEALLGMVGKLIQFPTTSMKIWPRGNRSSLQTRELAKTVEIELSVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLFN----------IQEGQRISLE

Query:  GDDVRWLHAIFWAKLA
        GDD+ WLHA+FWAK A
Subjt:  GDDVRWLHAIFWAKLA

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]3.0e-1754.9Show/hide
Query:  QVESEALLGMVGKLIQFPTTSMKIW--------------------------PRGNRSSLQTRELAKTVEIELSVPDTLPTSAESSRSSSSTWVELYIESV
        QV+SEA+  MV KLIQ+PTT MKIW                          PRGNR SLQ  +L KTVEIEL +PDTLPTS+ESS+S+SSTW+ELY ESV
Subjt:  QVESEALLGMVGKLIQFPTTSMKIW--------------------------PRGNRSSLQTRELAKTVEIELSVPDTLPTSAESSRSSSSTWVELYIESV

Query:  HI
        H+
Subjt:  HI

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]1.4e-2278.95Show/hide
Query:  QVESEALLGMVGKLIQFPTTSMKIWPRGNRSSLQTRELAKTVEIELSVPDTLPTSAESSRSSSSTWVELYIESVHI
        QVESEAL GMV KLIQ+PTT M IWPRGNR S QT +L KTVEIEL VPDTLPTSAESS S+SSTW+ELY ESVH+
Subjt:  QVESEALLGMVGKLIQFPTTSMKIWPRGNRSSLQTRELAKTVEIELSVPDTLPTSAESSRSSSSTWVELYIESVHI

TYK01989.1 reverse transcriptase [Cucumis melo var. makuwa]3.2e-1965.59Show/hide
Query:  QVESEALLGMVGKLIQFPTTSMKIWPRGNRSSLQTRELAKT-----------------VEIELSVPDTLPTSAESSRSSSSTWVELYIESVHI
        QVESEA LG VGKLIQ+PTT MKI PRGNR SLQTREL KT                 VEIEL VPDTLPTS ES  S+SSTW+ELY ESVH+
Subjt:  QVESEALLGMVGKLIQFPTTSMKIWPRGNRSSLQTRELAKT-----------------VEIELSVPDTLPTSAESSRSSSSTWVELYIESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7T223 Reverse transcriptase1.6e-1965.59Show/hide
Query:  QVESEALLGMVGKLIQFPTTSMKIWPRGNRSSLQTRELAKT-----------------VEIELSVPDTLPTSAESSRSSSSTWVELYIESVHI
        QVESEA LG VGKLIQ+PTT MKI PRGNR SLQTREL KT                 VEIEL VPDTLPTS ES  S+SSTW+ELY ESVH+
Subjt:  QVESEALLGMVGKLIQFPTTSMKIWPRGNRSSLQTRELAKT-----------------VEIELSVPDTLPTSAESSRSSSSTWVELYIESVHI

A0A5A7UAH6 CCHC-type domain-containing protein9.2e-2050.86Show/hide
Query:  ESEALLGMVGKLIQFPTTSMKIWPRGNRSSLQTRELAKTVEIELSVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLFN----------IQEGQRISLE
        ES   L   G  + F + ++ I PRGNR +L T +L KTVEIEL VPDTLPTSAESS+S+SSTW+ELY ESVH+  + +             EG    + 
Subjt:  ESEALLGMVGKLIQFPTTSMKIWPRGNRSSLQTRELAKTVEIELSVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLFN----------IQEGQRISLE

Query:  GDDVRWLHAIFWAKLA
        GDD+ WLHA+FWAK A
Subjt:  GDDVRWLHAIFWAKLA

A0A5A7V2F2 Uncharacterized protein1.5e-1754.9Show/hide
Query:  QVESEALLGMVGKLIQFPTTSMKIW--------------------------PRGNRSSLQTRELAKTVEIELSVPDTLPTSAESSRSSSSTWVELYIESV
        QV+SEA+  MV KLIQ+PTT MKIW                          PRGNR SLQ  +L KTVEIEL +PDTLPTS+ESS+S+SSTW+ELY ESV
Subjt:  QVESEALLGMVGKLIQFPTTSMKIW--------------------------PRGNRSSLQTRELAKTVEIELSVPDTLPTSAESSRSSSSTWVELYIESV

Query:  HI
        H+
Subjt:  HI

A0A5D3BET3 Uncharacterized protein6.8e-2378.95Show/hide
Query:  QVESEALLGMVGKLIQFPTTSMKIWPRGNRSSLQTRELAKTVEIELSVPDTLPTSAESSRSSSSTWVELYIESVHI
        QVESEAL GMV KLIQ+PTT M IWPRGNR S QT +L KTVEIEL VPDTLPTSAESS S+SSTW+ELY ESVH+
Subjt:  QVESEALLGMVGKLIQFPTTSMKIWPRGNRSSLQTRELAKTVEIELSVPDTLPTSAESSRSSSSTWVELYIESVHI

A0A5D3BV68 Reverse transcriptase1.6e-1965.59Show/hide
Query:  QVESEALLGMVGKLIQFPTTSMKIWPRGNRSSLQTRELAKT-----------------VEIELSVPDTLPTSAESSRSSSSTWVELYIESVHI
        QVESEA LG VGKLIQ+PTT MKI PRGNR SLQTREL KT                 VEIEL VPDTLPTS ES  S+SSTW+ELY ESVH+
Subjt:  QVESEALLGMVGKLIQFPTTSMKIWPRGNRSSLQTRELAKT-----------------VEIELSVPDTLPTSAESSRSSSSTWVELYIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCTATTTTACAAAGTTGTGGATTTCGTGGAAAAAGTGTCCAAAATGAAGCCATTCAAGCCCAATTTCCATGCTTGGGTCAAGGGGAAATTGCCTGACTTTGAAAA
TGAATTGGAATTGCCTGCTTATGAGAATGAAATATCTACAGTTGATGATTTATCTTCTTTTGAAAATGAGTTAGATTTGCCTGAGATTGATGATTTTGATGATGATATTG
ATTTGCCTGACATTGAGAATGAGCATGTTTTGCATAAAAAGGATTACTTGATAGATAATTTTGAGTTTTATCATGATAATGCTGAATCTATTGAGTCTGATCTTGATATT
CCTGAGTGCATGAAACCTGAGAATGTTAATAATTTCGATTCGTGTCCTGATGATCTATATAGCATAGAATCTGACCCAGAGGAACTCGAATCTGTGCATAGTATAGAATC
TGACCCTGAAGAGCTTGAATTCTTTAATTCTGATAGTGAGTCATATGATAGCTTAGTCGAATCATTTTTTAATTCTGAGTCTGAGGAATCTTCTGAGCATATAGATATTG
AATCTGATGAATGGACTGGCATGATTGATAGGCCATCTTTAGATCCCAGACCAGTAGATATCATAACACTTGATGACTCTGTTAACAATTGTTTTGAGAATAGAGATCTA
GAAAAGAGATTTGATGCTGTTGCATATTTTCTGAAATTTGGAAAGTCTGGAAAACGCTTAGCGTCGAGACGCTGTAAGGACAGCGTTGCGACGCTGTGCCATGTAGCGTC
GCGACGCTACCCCATTTCCGAGCCTATAAAAGGCACCCCTTGGTCCCTCATTTTAGGCATCAATCATCATTTCCTCATTCCTTTCTTTCTTTCTTTGGCTCCTTTGGAGC
CTCTCTCAAGGCTTTCTAGCCTTTTGAGAGCTTTCTTAGTGGGAAAATTTTGGGAAATTTTGGGGAGCATCCTAGGAGGCTCAAGGAGTTTTCGGAGGGACTCCAAGCGT
AGCGAAGGGGTCTTCTACGGTCAATTCCTTCCCTTTTATTATGCTCTTTATTATGCTTTCCGTTCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTGGGTATGGT
TGGAAAGCTTATTCAATTTCCTACAACGTCCATGAAGATTTGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCTCGG
TGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACATTCAG
GAGGGTCAGCGGATATCGTTAGAGGGGGACGATGTCCGTTGGCTTCACGCCATCTTTTGGGCTAAGCTAGCA
mRNA sequenceShow/hide mRNA sequence
ATGTCGCTATTTTACAAAGTTGTGGATTTCGTGGAAAAAGTGTCCAAAATGAAGCCATTCAAGCCCAATTTCCATGCTTGGGTCAAGGGGAAATTGCCTGACTTTGAAAA
TGAATTGGAATTGCCTGCTTATGAGAATGAAATATCTACAGTTGATGATTTATCTTCTTTTGAAAATGAGTTAGATTTGCCTGAGATTGATGATTTTGATGATGATATTG
ATTTGCCTGACATTGAGAATGAGCATGTTTTGCATAAAAAGGATTACTTGATAGATAATTTTGAGTTTTATCATGATAATGCTGAATCTATTGAGTCTGATCTTGATATT
CCTGAGTGCATGAAACCTGAGAATGTTAATAATTTCGATTCGTGTCCTGATGATCTATATAGCATAGAATCTGACCCAGAGGAACTCGAATCTGTGCATAGTATAGAATC
TGACCCTGAAGAGCTTGAATTCTTTAATTCTGATAGTGAGTCATATGATAGCTTAGTCGAATCATTTTTTAATTCTGAGTCTGAGGAATCTTCTGAGCATATAGATATTG
AATCTGATGAATGGACTGGCATGATTGATAGGCCATCTTTAGATCCCAGACCAGTAGATATCATAACACTTGATGACTCTGTTAACAATTGTTTTGAGAATAGAGATCTA
GAAAAGAGATTTGATGCTGTTGCATATTTTCTGAAATTTGGAAAGTCTGGAAAACGCTTAGCGTCGAGACGCTGTAAGGACAGCGTTGCGACGCTGTGCCATGTAGCGTC
GCGACGCTACCCCATTTCCGAGCCTATAAAAGGCACCCCTTGGTCCCTCATTTTAGGCATCAATCATCATTTCCTCATTCCTTTCTTTCTTTCTTTGGCTCCTTTGGAGC
CTCTCTCAAGGCTTTCTAGCCTTTTGAGAGCTTTCTTAGTGGGAAAATTTTGGGAAATTTTGGGGAGCATCCTAGGAGGCTCAAGGAGTTTTCGGAGGGACTCCAAGCGT
AGCGAAGGGGTCTTCTACGGTCAATTCCTTCCCTTTTATTATGCTCTTTATTATGCTTTCCGTTCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTGGGTATGGT
TGGAAAGCTTATTCAATTTCCTACAACGTCCATGAAGATTTGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCTCGG
TGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACATTCAG
GAGGGTCAGCGGATATCGTTAGAGGGGGACGATGTCCGTTGGCTTCACGCCATCTTTTGGGCTAAGCTAGCA
Protein sequenceShow/hide protein sequence
MSLFYKVVDFVEKVSKMKPFKPNFHAWVKGKLPDFENELELPAYENEISTVDDLSSFENELDLPEIDDFDDDIDLPDIENEHVLHKKDYLIDNFEFYHDNAESIESDLDI
PECMKPENVNNFDSCPDDLYSIESDPEELESVHSIESDPEELEFFNSDSESYDSLVESFFNSESEESSEHIDIESDEWTGMIDRPSLDPRPVDIITLDDSVNNCFENRDL
EKRFDAVAYFLKFGKSGKRLASRRCKDSVATLCHVASRRYPISEPIKGTPWSLILGINHHFLIPFFLSLAPLEPLSRLSSLLRAFLVGKFWEILGSILGGSRSFRRDSKR
SEGVFYGQFLPFYYALYYAFRSFWGVQVESEALLGMVGKLIQFPTTSMKIWPRGNRSSLQTRELAKTVEIELSVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLFNIQ
EGQRISLEGDDVRWLHAIFWAKLA