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Spg011149 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011149
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold4:26513979..26515510
RNA-Seq ExpressionSpg011149
SyntenySpg011149
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]4.1e-1143.93Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSSTFQ-----------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS ++ ++  +                              G    +  DDV WLHA+FR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSSTFQ-----------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPG

Query:  GANLTWF
            TW+
Subjt:  GANLTWF

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.3e-1455.56Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SS+    + E   V +        EDDV WLHA+FR K AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGG

TYK06355.1 uncharacterized protein E5676_scaffold163G00340 [Cucumis melo var. makuwa]1.1e-1146.23Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGANLTWFAVVQK
        MTEILS  LYGTVCTQ                 VEIELPVPDTLPTS   ++T        G    + ED+V WL A+FR K  GGPGG   TW +   +
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGANLTWFAVVQK

Query:  NRGEAG
         + EAG
Subjt:  NRGEAG

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]5.7e-1352.63Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGANLTWF
        MTEILS RLYGTVCTQ                 VEIELPV DTLPTSAESS ++S S         +  DDV WLH++FR K A GPGG   TW+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGANLTWF

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.3e-1455.56Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SS+    + E   V +        EDDV WLHA+FR K AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein2.0e-1143.93Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSSTFQ-----------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS ++ ++  +                              G    +  DDV WLHA+FR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSSTFQ-----------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPG

Query:  GANLTWF
            TW+
Subjt:  GANLTWF

A0A5A7VMG9 Reverse transcriptase1.1e-1455.56Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SS+    + E   V +        EDDV WLHA+FR K AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGG

A0A5D3C4P7 Retrotrans_gag domain-containing protein5.2e-1246.23Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGANLTWFAVVQK
        MTEILS  LYGTVCTQ                 VEIELPVPDTLPTS   ++T        G    + ED+V WL A+FR K  GGPGG   TW +   +
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGANLTWFAVVQK

Query:  NRGEAG
         + EAG
Subjt:  NRGEAG

A0A5D3CU23 Retrotrans_gag domain-containing protein2.8e-1352.63Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGANLTWF
        MTEILS RLYGTVCTQ                 VEIELPV DTLPTSAESS ++S S         +  DDV WLH++FR K A GPGG   TW+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGANLTWF

A0A5D3DX39 Reverse transcriptase1.1e-1455.56Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SS+    + E   V +        EDDV WLHA+FR K AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCAGGAGGGGCAA
ATTTGACTTGGTTTGCTGTTGTGCAGAAAAACAGAGGTGAAGCTGGAATTCCCCAGAAATGTGACCGCATTTCTGGGAAGGCAAAAATGAAATGCGACCGCATTTCTAGA
AAACAGATCACCTATTTCGCAGCTCCTCAACCAATCTCTACACTATATAAGCTCGGGATTCGAAGTCAAATGGAAGCAGAGCTCACTTGGAAGAAAAGGGTGGTGACAGA
ACCCTGGCTCGACGCCAATGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCAGGAGGGGCAA
ATTTGACTTGGTTTGCTGTTGTGCAGAAAAACAGAGGTGAAGCTGGAATTCCCCAGAAATGTGACCGCATTTCTGGGAAGGCAAAAATGAAATGCGACCGCATTTCTAGA
AAACAGATCACCTATTTCGCAGCTCCTCAACCAATCTCTACACTATATAAGCTCGGGATTCGAAGTCAAATGGAAGCAGAGCTCACTTGGAAGAAAAGGGTGGTGACAGA
ACCCTGGCTCGACGCCAATGAGTAG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGANLTWFAVVQKNRGEAGIPQKCDRISGKAKMKCDRISR
KQITYFAAPQPISTLYKLGIRSQMEAELTWKKRVVTEPWLDANE