CuGenDBv2

Gene ID	Spg011151
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ty1-copia retrotransposon protein
Genome location	scaffold4:29654141..29659855
RNA-Seq Expression	Spg011151
Synteny	Spg011151
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0044943.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

1.4e-21

57.14

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Query:  YVEKSAAPVADLEKSKEVQPDPHSSK---EVQSVPQKPKGSHDIDPERFEKDNKAVRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRYGGDDAGRKKYM
        YV  +  P +D + +     DP SS       +V ++ K    IDPE++ KDNK VRGHLLNHM+D +FDLFVVQKSAK IW TLESRYGGDDAGRKKY+
Subjt:  YVEKSAAPVADLEKSKEVQPDPHSSK---EVQSVPQKPKGSHDIDPERFEKDNKAVRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRYGGDDAGRKKYM

Query:  VGECL
        VG+ L
Subjt:  VGECL

TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

5.2e-21

57.14

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Query:  YVEKSAAPVADLEKSKEVQPDPHSSK---EVQSVPQKPKGSHDIDPERFEKDNKAVRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRYGGDDAGRKKYM
        YV  +  P +D   +     DP SS       +V  + K    IDPE++ KDNK VRGHLLNHM+D +FDLFVVQKSAK IW TLESRYGGDDAGRKKY+
Subjt:  YVEKSAAPVADLEKSKEVQPDPHSSK---EVQSVPQKPKGSHDIDPERFEKDNKAVRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRYGGDDAGRKKYM

Query:  VGECL
        VG+ L
Subjt:  VGECL

TYK11299.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

4.0e-21

57.14

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Query:  YVEKSAAPVADLEKSKEVQPDPHSSK---EVQSVPQKPKGSHDIDPERFEKDNKAVRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRYGGDDAGRKKYM
        YV  +  P +D   +     DP SS       +V ++ K    IDPE++ KDNK VRGHLLNHM+D +FDLFVVQKSAK IW TLESRYGGDDAGRKKY+
Subjt:  YVEKSAAPVADLEKSKEVQPDPHSSK---EVQSVPQKPKGSHDIDPERFEKDNKAVRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRYGGDDAGRKKYM

Query:  VGECL
        VG+ L
Subjt:  VGECL

XP_008445782.1 PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo]

4.0e-21

57.14

Show/hide

Query:  YVEKSAAPVADLEKSKEVQPDPHSSK---EVQSVPQKPKGSHDIDPERFEKDNKAVRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRYGGDDAGRKKYM
        YV  +  P +D   +     DP SS       +V ++ K    IDPE++ KDNK VRGHLLNHM+D +FDLFVVQKSAK IW TLESRYGGDDAGRKKY+
Subjt:  YVEKSAAPVADLEKSKEVQPDPHSSK---EVQSVPQKPKGSHDIDPERFEKDNKAVRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRYGGDDAGRKKYM

Query:  VGECL
        VG+ L
Subjt:  VGECL

XP_022158735.1 uncharacterized protein LOC111025197 [Momordica charantia]

8.0e-22

61.22

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Query:  SAAPVADLEKSKEVQPDPHSSKEVQSVPQKPKGSHDIDPERFEKDNKAVRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRYGGDDAGRKKYMVGECL
        +AA  A    +    P   ++  V      P  S  I+ ++FEKDNK VRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRYGGDDAGR+KY+VG+ L
Subjt:  SAAPVADLEKSKEVQPDPHSSKEVQSVPQKPKGSHDIDPERFEKDNKAVRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRYGGDDAGRKKYMVGECL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BE75 uncharacterized protein LOC103488707

1.9e-21

57.14

Show/hide

Query:  YVEKSAAPVADLEKSKEVQPDPHSSK---EVQSVPQKPKGSHDIDPERFEKDNKAVRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRYGGDDAGRKKYM
        YV  +  P +D   +     DP SS       +V ++ K    IDPE++ KDNK VRGHLLNHM+D +FDLFVVQKSAK IW TLESRYGGDDAGRKKY+
Subjt:  YVEKSAAPVADLEKSKEVQPDPHSSK---EVQSVPQKPKGSHDIDPERFEKDNKAVRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRYGGDDAGRKKYM

Query:  VGECL
        VG+ L
Subjt:  VGECL

A0A5A7TN53 Ty1-copia retrotransposon protein

6.6e-22

57.14

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Query:  YVEKSAAPVADLEKSKEVQPDPHSSK---EVQSVPQKPKGSHDIDPERFEKDNKAVRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRYGGDDAGRKKYM
        YV  +  P +D + +     DP SS       +V ++ K    IDPE++ KDNK VRGHLLNHM+D +FDLFVVQKSAK IW TLESRYGGDDAGRKKY+
Subjt:  YVEKSAAPVADLEKSKEVQPDPHSSK---EVQSVPQKPKGSHDIDPERFEKDNKAVRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRYGGDDAGRKKYM

Query:  VGECL
        VG+ L
Subjt:  VGECL

A0A5D3C5T2 Ty1-copia retrotransposon protein

2.5e-21

57.14

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Query:  YVEKSAAPVADLEKSKEVQPDPHSSK---EVQSVPQKPKGSHDIDPERFEKDNKAVRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRYGGDDAGRKKYM
        YV  +  P +D   +     DP SS       +V  + K    IDPE++ KDNK VRGHLLNHM+D +FDLFVVQKSAK IW TLESRYGGDDAGRKKY+
Subjt:  YVEKSAAPVADLEKSKEVQPDPHSSK---EVQSVPQKPKGSHDIDPERFEKDNKAVRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRYGGDDAGRKKYM

Query:  VGECL
        VG+ L
Subjt:  VGECL

A0A5D3CM58 Ty1-copia retrotransposon protein

1.9e-21

57.14

Show/hide

Query:  YVEKSAAPVADLEKSKEVQPDPHSSK---EVQSVPQKPKGSHDIDPERFEKDNKAVRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRYGGDDAGRKKYM
        YV  +  P +D   +     DP SS       +V ++ K    IDPE++ KDNK VRGHLLNHM+D +FDLFVVQKSAK IW TLESRYGGDDAGRKKY+
Subjt:  YVEKSAAPVADLEKSKEVQPDPHSSK---EVQSVPQKPKGSHDIDPERFEKDNKAVRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRYGGDDAGRKKYM

Query:  VGECL
        VG+ L
Subjt:  VGECL

A0A6J1DWN1 uncharacterized protein LOC111025197

3.9e-22

61.22

Show/hide

Query:  SAAPVADLEKSKEVQPDPHSSKEVQSVPQKPKGSHDIDPERFEKDNKAVRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRYGGDDAGRKKYMVGECL
        +AA  A    +    P   ++  V      P  S  I+ ++FEKDNK VRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRYGGDDAGR+KY+VG+ L
Subjt:  SAAPVADLEKSKEVQPDPHSSKEVQSVPQKPKGSHDIDPERFEKDNKAVRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRYGGDDAGRKKYMVGECL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCACCTACTCCAATTTGGAACCTTGGAGCCTATAGCTATTTGGTTTCACCATGAGGTATCAGGAGACAAATCTCAAGATACGGTCAATCTTGTCAGCGATGAAGGTAA
AGGAAGTACTGTCATGACTCGTCAAAAGAAACAAGGACAACATCTTGTTCAGAAAGGATGTTGCTCATCCAAAAGAAAGAATAGACCTCGAAGACAGAATAATTCAATGA
AACCTAAACTTGAGAAAGAAAGAAATCAAGATCCTTCTCAACATCGCCAATTGGTAACCTTAAAAGAATCATCCTCGAGAAATTTTTGTCTCATCAAGAAAGTGAAAGAA
AATTTTGCAAGTTCATGTTATATCAATGTAGAAGAAGACGGTGGATCGAAGGAAATCAAGAAAAGGACTTCTGTCTTTGATCGCATTGAGCCTTCAACTACTCGACCTTC
AGTTTGGATCATCACTTGCTCCAAGTTTGATACCTCGCTTCACCTTCAAAGGGTGGCAGTTGAAGACTTCGTTTTCACTTCATCTTCAAATCTTCAAAGGGTGGCAGTTG
AAGGCTTCGTTTTCACTGCATCTTCAAATCTTCAAAGGTTGGCAGTTGAAAACTTTGCTTCACTACAAATGTTGGTGGTTGAAGACTTCGCTATCGCTTCATCTTCAAAA
TTTGTCGGTCGATGTCGCTTCATTTTCAAAGCTTTGCTTCGTCTTCAAAAGTTGACAGCTGGCGGCTTTGCTTCGTCTTCAAAAGTTGACAGCTGGCGGCTTCGTTTCGT
CTTCAAAACTTCGCGGTTGGCGGCTTTCGCTTCATCTTCAAATATTGACAGTTGGCAAGTTTTGCTTCGTCTTCAAATGTTGGCAGTTGACGACTTCACTTCATCTTCAA
AAGTTGGCGGTTGGCGACTTTCACTTCATTTTCAAAAGTTGACGGTTGACGGCCTCGCTTCTTCTTCAAAATTTGATGGAGGTGAAGGCACTGCAAATGAAGCTGATGAA
ATCGCTGTAGACAAGTCTGGTGACCACCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGGTGAAATCACTGCAAGTGAATTTGATGACGACCGT
TGTAGACGAGTCTGATGACCACCCCTGCGAGTCTGGTGACCACCACTTGACCACCCCTGCAGGATACTACAGTCATCAAAGTGACTGGTCTAGACAGGAGGTGAAGTCAC
TGCAAATGAAGTTGATGACAACCGTTGTAGGCGAGTCTGGTGACCATCCCTGCAGGCTACTCAGATCACCCAATAAAATGGGGACTGTTTTCTTTTCAACCTCTTCTCCT
TCCTTCAAAACCATCGTGATCATCATCCAACTCGACAAAGTGACCTACGGCGATCATGGCAACAAATACAACGACAATCATTACAGTTCGATGAGGCTCAAGTCTGATGA
GTTCGGTCCAGTGCTTAGTCGCCACGTGTCCACCAGTACCGTCCTGTTGACCACGCGCACAGCTCCGTTCGTGACCGCTGACCGCGCGCACCAGCTCCGCTCGTTGACCG
CTCATCCCGCGCCAGTTCGTTCTTTGACCGTCAAACTCGCGTGCGTGGACGGCTCCTGTGGCAGACGTTGCCCATTTTGTGAAGCTGCTCATTTTCTTCGAACAACTGGA
GGTCGACTACATTATAACCTCCGATATGTGGAGAAATCAGCAGCACCCGTTGCTGATCTGGAAAAATCCAAAGAGGTCCAGCCTGATCCACATAGCTCTAAGGAGGTTCA
GTCAGTCCCTCAAAAACCAAAGGGCAGTCATGACATCGATCCAGAAAGATTCGAGAAGGACAACAAGGCGGTTCGGGGTCATCTTCTGAACCACATGAACGACTCACTGT
TCGACCTGTTCGTTGTTCAAAAGTCAGCTAAAGTTATCTGGGACACTCTGGAGTCCAGGTATGGCGGCGATGATGCAGGAAGAAAGAAATACATGGTCGGCGAATGTCTT
GCTCGAAAAATTCCCTTCTTCATGGAGCGACTACCGCAATCATCTAAAGCACAAGAAGAAGGACCTGACATTGCAAGAGTTGATCAGTCACATGCGAATTGA

mRNA sequence

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Protein sequence

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MHLLQFGTLEPIAIWFHHEVSGDKSQDTVNLVSDEGKGSTVMTRQKKQGQHLVQKGCCSSKRKNRPRRQNNSMKPKLEKERNQDPSQHRQLVTLKESSSRNFCLIKKVKE
NFASSCYINVEEDGGSKEIKKRTSVFDRIEPSTTRPSVWIITCSKFDTSLHLQRVAVEDFVFTSSSNLQRVAVEGFVFTASSNLQRLAVENFASLQMLVVEDFAIASSSK
FVGRCRFIFKALLRLQKLTAGGFASSSKVDSWRLRFVFKTSRLAAFASSSNIDSWQVLLRLQMLAVDDFTSSSKVGGWRLSLHFQKLTVDGLASSSKFDGGEGTANEADE
IAVDKSGDHPAGNYSHQSDWSRQVVVKSLQVNLMTTVVDESDDHPCESGDHHLTTPAGYYSHQSDWSRQEVKSLQMKLMTTVVGESGDHPCRLLRSPNKMGTVFFSTSSP
SFKTIVIIIQLDKVTYGDHGNKYNDNHYSSMRLKSDEFGPVLSRHVSTSTVLLTTRTAPFVTADRAHQLRSLTAHPAPVRSLTVKLACVDGSCGRRCPFCEAAHFLRTTG
GRLHYNLRYVEKSAAPVADLEKSKEVQPDPHSSKEVQSVPQKPKGSHDIDPERFEKDNKAVRGHLLNHMNDSLFDLFVVQKSAKVIWDTLESRYGGDDAGRKKYMVGECL
ARKIPFFMERLPQSSKAQEEGPDIARVDQSHAN

Spg011151 (gene) of Sponge gourd (cylindrica) v1 genome