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Spg011156 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011156
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold4:25120912..25123202
RNA-Seq ExpressionSpg011156
SyntenySpg011156
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041121.1 hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa]7.5e-1060.29Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTESSSTSSSTWVELYIESVHI
        MTEILS RLYGTVCT                  VEIELPVPD LPTS ESS+++SSTW+ELY ESVH+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTESSSTSSSTWVELYIESVHI

KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]2.1e-1276.47Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSTESSSTSSSTWVELYIESVHI
        MTEILS RLYGTVCTQV+IELP+PDTLPTS ESS ++ +TW+ELY ESVH+
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSTESSSTSSSTWVELYIESVHI

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]8.0e-1263.24Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTESSSTSSSTWVELYIESVHI
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTS ESS ++SSTW+ELY+E VH+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTESSSTSSSTWVELYIESVHI

TYK27997.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.4e-0958.82Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTESSSTSSSTWVELYIESVHI
        MTEILS R YGTVCTQ                 VEIELPVPDTLP+STES  ++SSTW+ELY E VH+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTESSSTSSSTWVELYIESVHI

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]8.0e-1263.24Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTESSSTSSSTWVELYIESVHI
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTS ESS ++SSTW+ELY+E VH+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTESSSTSSSTWVELYIESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7THH5 Uncharacterized protein3.6e-1060.29Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTESSSTSSSTWVELYIESVHI
        MTEILS RLYGTVCT                  VEIELPVPD LPTS ESS+++SSTW+ELY ESVH+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTESSSTSSSTWVELYIESVHI

A0A5A7V638 Uncharacterized protein1.0e-1276.47Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSTESSSTSSSTWVELYIESVHI
        MTEILS RLYGTVCTQV+IELP+PDTLPTS ESS ++ +TW+ELY ESVH+
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSTESSSTSSSTWVELYIESVHI

A0A5A7VI26 Putative DNA/RNA polymerases superfamily protein3.1e-0958.82Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTESSSTSSSTWVELYIESVHI
        MTEILS R YGTVCTQ                 VEIELPVPDTLP+STES  ++SSTW+ELY E VH+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTESSSTSSSTWVELYIESVHI

A0A5A7VMG9 Reverse transcriptase3.9e-1263.24Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTESSSTSSSTWVELYIESVHI
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTS ESS ++SSTW+ELY+E VH+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTESSSTSSSTWVELYIESVHI

A0A5D3DX39 Reverse transcriptase3.9e-1263.24Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTESSSTSSSTWVELYIESVHI
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTS ESS ++SSTW+ELY+E VH+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSTESSSTSSSTWVELYIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTACTGAAAGTTCTAGCACAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGTTAGATGTTGGGTCAGTTCAGATAGAACTAG
CGGAGTATGGTCCGAGTATTGTTGAGAGTGAGTCCAGTCAGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTACTGAAAGTTCTAGCACAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGTTAGATGTTGGGTCAGTTCAGATAGAACTAG
CGGAGTATGGTCCGAGTATTGTTGAGAGTGAGTCCAGTCAGGACTAG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSTESSSTSSSTWVELYIESVHIVNVLFNVQEGQRLDVGSVQIELAEYGPSIVESESSQD