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Spg011167 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011167
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description60S ribosomal protein L38
Genome locationscaffold4:29108592..29110579
RNA-Seq ExpressionSpg011167
SyntenySpg011167
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002675 - Ribosomal protein L38e
IPR038464 - Ribosomal protein L38e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651744.1 hypothetical protein Csa_006027 [Cucumis sativus]7.4e-2789.19Show/hide
Query:  MVETPF---CGQPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        M+  PF    GQPKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
Subjt:  MVETPF---CGQPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

KOM44433.1 hypothetical protein LR48_Vigan05g203800 [Vigna angularis]1.6e-2692.75Show/hide
Query:  QPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGILLSSY
        QPKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG LL+ +
Subjt:  QPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGILLSSY

PKI38043.1 hypothetical protein CRG98_041573 [Punica granatum]1.3e-2694.12Show/hide
Query:  CGQPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGILL
        C QPKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG  L
Subjt:  CGQPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGILL

XP_017413899.1 PREDICTED: C-terminal binding protein AN-like [Vigna angularis]7.4e-2790.28Show/hide
Query:  QPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGILLSSYTLC
        QPKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG+   S  LC
Subjt:  QPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGILLSSYTLC

XP_022946384.1 60S ribosomal protein L38 isoform X1 [Cucurbita moschata]1.3e-2696.92Show/hide
Query:  GQPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI
        GQPKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG+
Subjt:  GQPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI

TrEMBL top hitse value%identityAlignment
A0A0L9UNW4 Uncharacterized protein8.0e-2792.75Show/hide
Query:  QPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGILLSSY
        QPKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG LL+ +
Subjt:  QPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGILLSSY

A0A2I0I2J4 Uncharacterized protein6.1e-2794.12Show/hide
Query:  CGQPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGILL
        C QPKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG  L
Subjt:  CGQPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGILL

A0A6J1G3M5 60S ribosomal protein L38 isoform X16.1e-2796.92Show/hide
Query:  GQPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI
        GQPKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG+
Subjt:  GQPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI

A0A6J1IBC7 60S ribosomal protein L38 isoform X16.1e-2796.92Show/hide
Query:  GQPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI
        GQPKQIHEIKDFLLTARRKDARSVKIKRS+DVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG+
Subjt:  GQPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI

M5XAG4 Uncharacterized protein1.2e-2788.89Show/hide
Query:  MVETPFCGQPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI
        MV+   C QPKQIHEIKDFLLTARRKDARSVKIKRS+D VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG+
Subjt:  MVETPFCGQPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI

SwissProt top hitse value%identityAlignment
O22860 60S ribosomal protein L383.5e-2792.06Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI
        PKQIHEIKDFLLTARRKDARSVKIKRS+D+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG+
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI

P46291 60S ribosomal protein L384.2e-2587.3Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI
        PKQIHEIKDFLLTARRKDAR+VKIK+++D+VKFKVRCSKYLYTLCV D EKADKLKQSLPPG+
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI

P63173 60S ribosomal protein L384.8e-2176.19Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI
        P++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPG+
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI

Q32PB9 60S ribosomal protein L384.8e-2176.19Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI
        P++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPG+
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI

Q95V84 60S ribosomal protein L383.0e-2382.54Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI
        PKQIHEIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKADKLKQSLPPG+
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI

Arabidopsis top hitse value%identityAlignment
AT2G43460.1 Ribosomal L38e protein family2.5e-2892.06Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI
        PKQIHEIKDFLLTARRKDARSVKIKRS+D+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG+
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI

AT3G59540.1 Ribosomal L38e protein family2.5e-2892.06Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI
        PKQIHEIKDFLLTARRKDARSVKIKRS+D+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG+
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCCCAAACCCTAGAATTGATCCATCGGACTCTGTTCTCTACGAATCCTAAACATGGTACGCCCTCTCTTCCCTACGCTTTGGTTTACTCGGTTTCATTGTTCTTGCCTGT
ATTTCTGTTGATTCCACTTACACAAGTGTGGTGTTATTCTTCATTTATGCTGGGATTTCATGGCCGAATCTTTGTTATCTCAAAAAATAGTATCAGTATGGTTGAAACTC
CCTTTTGTGGACAGCCGAAGCAAATCCATGAGATTAAAGACTTTCTTCTCACTGCAAGAAGAAAGGATGCCCGTTCTGTCAAAATTAAGAGGAGCAGAGATGTAGTCAAG
TTTAAGGTTCGCTGCTCTAAGTACCTTTACACGCTCTGCGTGTTCGACTCTGAGAAGGCTGACAAATTGAAGCAGTCTCTTCCACCAGGTATTCTTTTAAGCTCTTATAC
ATTATGTTCAGGAGTTGTTCTGATTACTGCTAGTTTGAGTGTGCAAGATCTTTGA
mRNA sequenceShow/hide mRNA sequence
GCCCAAACCCTAGAATTGATCCATCGGACTCTGTTCTCTACGAATCCTAAACATGGTACGCCCTCTCTTCCCTACGCTTTGGTTTACTCGGTTTCATTGTTCTTGCCTGT
ATTTCTGTTGATTCCACTTACACAAGTGTGGTGTTATTCTTCATTTATGCTGGGATTTCATGGCCGAATCTTTGTTATCTCAAAAAATAGTATCAGTATGGTTGAAACTC
CCTTTTGTGGACAGCCGAAGCAAATCCATGAGATTAAAGACTTTCTTCTCACTGCAAGAAGAAAGGATGCCCGTTCTGTCAAAATTAAGAGGAGCAGAGATGTAGTCAAG
TTTAAGGTTCGCTGCTCTAAGTACCTTTACACGCTCTGCGTGTTCGACTCTGAGAAGGCTGACAAATTGAAGCAGTCTCTTCCACCAGGTATTCTTTTAAGCTCTTATAC
ATTATGTTCAGGAGTTGTTCTGATTACTGCTAGTTTGAGTGTGCAAGATCTTTGA
Protein sequenceShow/hide protein sequence
AQTLELIHRTLFSTNPKHGTPSLPYALVYSVSLFLPVFLLIPLTQVWCYSSFMLGFHGRIFVISKNSISMVETPFCGQPKQIHEIKDFLLTARRKDARSVKIKRSRDVVK
FKVRCSKYLYTLCVFDSEKADKLKQSLPPGILLSSYTLCSGVVLITASLSVQDL