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Spg011168 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011168
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description60S ribosomal protein L38
Genome locationscaffold4:28209228..28213370
RNA-Seq ExpressionSpg011168
SyntenySpg011168
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022618 - ribonucleoprotein complex assembly (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002675 - Ribosomal protein L38e
IPR038464 - Ribosomal protein L38e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651744.1 hypothetical protein Csa_006027 [Cucumis sativus]2.1e-2681.93Show/hide
Query:  MVETPF---CGQPKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG--ILLSSFS
        M+  PF    GQPKQIHEIKDFLLTARRKDARSVKIKRS+D+VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG  +L++S S
Subjt:  MVETPF---CGQPKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG--ILLSSFS

KOM44433.1 hypothetical protein LR48_Vigan05g203800 [Vigna angularis]2.1e-2692.75Show/hide
Query:  QPKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGILLSSF
        QPKQIHEIKDFLLTARRKDARSVKIKRS+D+VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG LL+ F
Subjt:  QPKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGILLSSF

RWV99291.1 hypothetical protein GW17_00037804 [Ensete ventricosum]1.4e-2750.62Show/hide
Query:  IPACAPPVKAKGSGAGKNLDEIVLFVAQLGTEKCFGSSNSNPCHLCEWEWHCFYLWYCRKLLPC---LEWVDEL-ALFECHCHKISKNSISMVETPFCGQ
        +P   PP++ +  G  K+ +      A +   KCF S     C    W     +LW    L+     L W++ +  L +       + SI  V      Q
Subjt:  IPACAPPVKAKGSGAGKNLDEIVLFVAQLGTEKCFGSSNSNPCHLCEWEWHCFYLWYCRKLLPC---LEWVDEL-ALFECHCHKISKNSISMVETPFCGQ

Query:  PKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        PKQIHEIKDFLLTARRKDARSVKIKRSRD+VKFKVRC+KYLYTLCVFDSEKADKLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

RWW55233.1 hypothetical protein BHE74_00038138 [Ensete ventricosum]1.2e-2650Show/hide
Query:  IPACAPPVKAKGSGAGKNLDEIVLFVAQLGTEKCFGSSNSNPCHLCEWEWHCFYLWYCRKLLPC---LEWVDEL-ALFECHCHKISKNSISMVETPFCGQ
        +P   PP++ +     K+ +      A +   KCF S     C    W     +LW    L+     L W++ +  L +       + SI  V      Q
Subjt:  IPACAPPVKAKGSGAGKNLDEIVLFVAQLGTEKCFGSSNSNPCHLCEWEWHCFYLWYCRKLLPC---LEWVDEL-ALFECHCHKISKNSISMVETPFCGQ

Query:  PKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        PKQIHEIKDFLLTARRKDARSVKIKRSRD+VKFKVRC+KYLYTLCVFDSEKADKLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

RZB63775.1 60S ribosomal protein L38 [Glycine soja]2.5e-2778.57Show/hide
Query:  CHCHKISKNSISMVETPFCGQPKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI
        C C +I+ N+  ++ T    QPKQIHEIKDFLLTARRKDARSVKIKRSRD+VKFKVRCSKYLYTLCVFD EKADKLKQSLPPG+
Subjt:  CHCHKISKNSISMVETPFCGQPKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI

TrEMBL top hitse value%identityAlignment
A0A0L9UNW4 Uncharacterized protein1.0e-2692.75Show/hide
Query:  QPKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGILLSSF
        QPKQIHEIKDFLLTARRKDARSVKIKRS+D+VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG LL+ F
Subjt:  QPKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGILLSSF

A0A444DME0 Uncharacterized protein7.0e-2850.62Show/hide
Query:  IPACAPPVKAKGSGAGKNLDEIVLFVAQLGTEKCFGSSNSNPCHLCEWEWHCFYLWYCRKLLPC---LEWVDEL-ALFECHCHKISKNSISMVETPFCGQ
        +P   PP++ +  G  K+ +      A +   KCF S     C    W     +LW    L+     L W++ +  L +       + SI  V      Q
Subjt:  IPACAPPVKAKGSGAGKNLDEIVLFVAQLGTEKCFGSSNSNPCHLCEWEWHCFYLWYCRKLLPC---LEWVDEL-ALFECHCHKISKNSISMVETPFCGQ

Query:  PKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        PKQIHEIKDFLLTARRKDARSVKIKRSRD+VKFKVRC+KYLYTLCVFDSEKADKLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

A0A445GR17 60S ribosomal protein L381.2e-2778.57Show/hide
Query:  CHCHKISKNSISMVETPFCGQPKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI
        C C +I+ N+  ++ T    QPKQIHEIKDFLLTARRKDARSVKIKRSRD+VKFKVRCSKYLYTLCVFD EKADKLKQSLPPG+
Subjt:  CHCHKISKNSISMVETPFCGQPKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI

A0A6J1IBC7 60S ribosomal protein L38 isoform X11.3e-2695.38Show/hide
Query:  GQPKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI
        GQPKQIHEIKDFLLTARRKDARSVKIKRS+D+VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG+
Subjt:  GQPKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI

M5XAG4 Uncharacterized protein3.5e-2788.89Show/hide
Query:  MVETPFCGQPKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI
        MV+   C QPKQIHEIKDFLLTARRKDARSVKIKRS+D VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG+
Subjt:  MVETPFCGQPKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI

SwissProt top hitse value%identityAlignment
O22860 60S ribosomal protein L384.4e-2793.65Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI
        PKQIHEIKDFLLTARRKDARSVKIKRS+DIVKFKVRCS+YLYTLCVFD EKADKLKQSLPPG+
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI

P46291 60S ribosomal protein L387.0e-2587.3Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI
        PKQIHEIKDFLLTARRKDAR+VKIK+++D+VKFKVRCSKYLYTLCV D EKADKLKQSLPPG+
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI

P63173 60S ribosomal protein L388.0e-2176.19Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI
        P++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPG+
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI

Q32PB9 60S ribosomal protein L388.0e-2176.19Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI
        P++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPG+
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI

Q95V84 60S ribosomal protein L385.0e-2382.54Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI
        PKQIHEIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKADKLKQSLPPG+
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI

Arabidopsis top hitse value%identityAlignment
AT2G43460.1 Ribosomal L38e protein family3.1e-2893.65Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI
        PKQIHEIKDFLLTARRKDARSVKIKRS+DIVKFKVRCS+YLYTLCVFD EKADKLKQSLPPG+
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI

AT3G59540.1 Ribosomal L38e protein family3.1e-2893.65Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI
        PKQIHEIKDFLLTARRKDARSVKIKRS+DIVKFKVRCS+YLYTLCVFD EKADKLKQSLPPG+
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCCCGCCGCTCAGATCTGTTCGTCGCCCTCGCTCAGACCCGTTCGCTGCCATCGCTCGCACTGTTGTGAGCCACCATCGTCCCTCTCGTCATCCGTTACTCAATCA
AACTTTAGTTACCCCAAGGCTGGTATTGAATGTTGTCAATTGGAGGGTTGTGGTGTTTTTGTTTGGAGTTTTGGATGCTAGTCATGATTTTGTTTTTGTATGCTTGAATG
AGATGAGATGTGATGTGGGGTTGAGTTCTCGCTTGATTCCCGCATGTGCACCTCCAGTAAAGGCAAAGGGATCGGGTGCTGGTAAGAATTTGGATGAGATTGTATTATTT
GTTGCTCAACTAGGTACTGAAAAATGTTTTGGTTCGAGTAATTCTAATCCATGTCATCTTTGTGAATGGGAGTGGCATTGTTTCTACCTCTGGTATTGTCGTAAATTGTT
ACCATGTCTTGAATGGGTCGATGAACTTGCTTTGTTTGAATGCCATTGCCATAAGATCTCAAAAAATAGTATCAGTATGGTTGAAACTCCCTTTTGTGGACAGCCAAAGC
AAATCCATGAGATTAAAGACTTTCTTCTCACTGCAAGAAGAAAGGATGCCCGTTCTGTCAAAATTAAGAGGAGCAGAGATATAGTCAAGTTTAAGGTTCGCTGCTCTAAG
TACCTTTACACGCTCTGCGTGTTCGACTCTGAGAAGGCTGACAAATTGAAGCAGTCCCTTCCACCAGGTATTCTTTTAAGCTCTTTTTCAATATGCTCAGGAGTTGTTGT
TCTGATTACTGCTAGTTTAGCAAGAAAAGCAGCCATTAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCCCGCCGCTCAGATCTGTTCGTCGCCCTCGCTCAGACCCGTTCGCTGCCATCGCTCGCACTGTTGTGAGCCACCATCGTCCCTCTCGTCATCCGTTACTCAATCA
AACTTTAGTTACCCCAAGGCTGGTATTGAATGTTGTCAATTGGAGGGTTGTGGTGTTTTTGTTTGGAGTTTTGGATGCTAGTCATGATTTTGTTTTTGTATGCTTGAATG
AGATGAGATGTGATGTGGGGTTGAGTTCTCGCTTGATTCCCGCATGTGCACCTCCAGTAAAGGCAAAGGGATCGGGTGCTGGTAAGAATTTGGATGAGATTGTATTATTT
GTTGCTCAACTAGGTACTGAAAAATGTTTTGGTTCGAGTAATTCTAATCCATGTCATCTTTGTGAATGGGAGTGGCATTGTTTCTACCTCTGGTATTGTCGTAAATTGTT
ACCATGTCTTGAATGGGTCGATGAACTTGCTTTGTTTGAATGCCATTGCCATAAGATCTCAAAAAATAGTATCAGTATGGTTGAAACTCCCTTTTGTGGACAGCCAAAGC
AAATCCATGAGATTAAAGACTTTCTTCTCACTGCAAGAAGAAAGGATGCCCGTTCTGTCAAAATTAAGAGGAGCAGAGATATAGTCAAGTTTAAGGTTCGCTGCTCTAAG
TACCTTTACACGCTCTGCGTGTTCGACTCTGAGAAGGCTGACAAATTGAAGCAGTCCCTTCCACCAGGTATTCTTTTAAGCTCTTTTTCAATATGCTCAGGAGTTGTTGT
TCTGATTACTGCTAGTTTAGCAAGAAAAGCAGCCATTAACTAA
Protein sequenceShow/hide protein sequence
MPPPLRSVRRPRSDPFAAIARTVVSHHRPSRHPLLNQTLVTPRLVLNVVNWRVVVFLFGVLDASHDFVFVCLNEMRCDVGLSSRLIPACAPPVKAKGSGAGKNLDEIVLF
VAQLGTEKCFGSSNSNPCHLCEWEWHCFYLWYCRKLLPCLEWVDELALFECHCHKISKNSISMVETPFCGQPKQIHEIKDFLLTARRKDARSVKIKRSRDIVKFKVRCSK
YLYTLCVFDSEKADKLKQSLPPGILLSSFSICSGVVVLITASLARKAAIN