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Spg011188 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011188
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDUF4283 domain-containing protein
Genome locationscaffold5:8392276..8398882
RNA-Seq ExpressionSpg011188
SyntenySpg011188
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]8.2e-1346.73Show/hide
Query:  RNHENFSYANTKNVLN-PPGF-APQTQENKKLEDLVGAFIAKSSNRTTKLEEAVIAINTTVNGHSTAIKNIETQLGQLVSVVSTMSKGKAPAEQEKTQME
        RNHENFSYAN KNVL  P GF      +   LED++  F+ +S +RTT LE +V AI +TV     A++N+E QL Q+ + + TM KGK P+  E    E
Subjt:  RNHENFSYANTKNVLN-PPGF-APQTQENKKLEDLVGAFIAKSSNRTTKLEEAVIAINTTVNGHSTAIKNIETQLGQLVSVVSTMSKGKAPAEQEKTQME

Query:  YCKAITV
         CKA+T+
Subjt:  YCKAITV

XP_022855495.1 uncharacterized protein LOC111376753 [Olea europaea var. sylvestris]3.7e-1331.37Show/hide
Query:  RNHENFSYANTKNVLN-PPGFAPQTQENK-KLEDLVGAFIAKSSNRTTKLEEAVIAINTTVNGHSTAIKNIETQLGQLVSVVSTMSKGKAPAEQEKTQME
        RNHEN SY N +N L  PPGF  Q  + K  LED++G FI+++ +R  K E  +  I T V+     +KN+E Q+GQL + + +  KGK P++ E    E
Subjt:  RNHENFSYANTKNVLN-PPGFAPQTQENK-KLEDLVGAFIAKSSNRTTKLEEAVIAINTTVNGHSTAIKNIETQLGQLVSVVSTMSKGKAPAEQEKTQME

Query:  YCKAITVHQEEFAMSNKDLGKKSYPCCDQLGQPEKTQVKSPCNRVGTTAPQPLQVKC--GCVVSKRGDEIRHDYQKSKGEVMAA--TEKFRRTSCNVEWA
        +C AIT+   +    +K   K   P  D +   E+   +      GT   +P  +       + K        + K K +   A   E F++   N+ +A
Subjt:  YCKAITVHQEEFAMSNKDLGKKSYPCCDQLGQPEKTQVKSPCNRVGTTAPQPLQVKC--GCVVSKRGDEIRHDYQKSKGEVMAA--TEKFRRTSCNVEWA

Query:  EAQT
        EA T
Subjt:  EAQT

XP_022868848.1 uncharacterized protein LOC111388394 [Olea europaea var. sylvestris]3.7e-1333.17Show/hide
Query:  RNHENFSYANTKNVLN-PPGFAPQTQENK-KLEDLVGAFIAKSSNRTTKLEEAVIAINTTVNGHSTAIKNIETQLGQLVSVVSTMSKGKAPAEQEKTQME
        RNHEN SY N +N L  PPGF  Q  + K  LED++G FI+++ +R  K E  +  I T V+     +KN+E Q+GQL + + +  KGK P++ E    E
Subjt:  RNHENFSYANTKNVLN-PPGFAPQTQENK-KLEDLVGAFIAKSSNRTTKLEEAVIAINTTVNGHSTAIKNIETQLGQLVSVVSTMSKGKAPAEQEKTQME

Query:  YCKAITVHQEEFAMSNKDLGKKSYPCCD-------QLGQPEKTQVKSPCNRVGTTAPQPLQVKCGCVVSKRGDEIRHDYQKSKGEVMAATEKFRRTSCNV
        +C AIT+   +    +K   K   P  D       Q  +PE T++  P +   +    P  +K     S+R  + + D Q +K       E FR+   N+
Subjt:  YCKAITVHQEEFAMSNKDLGKKSYPCCD-------QLGQPEKTQVKSPCNRVGTTAPQPLQVKCGCVVSKRGDEIRHDYQKSKGEVMAATEKFRRTSCNV

Query:  EWAEA
         +AEA
Subjt:  EWAEA

XP_024020480.1 uncharacterized protein LOC112091333 [Morus notabilis]1.4e-1244.86Show/hide
Query:  RNHENFSYANTKNVLN-PPGFAPQTQENK-KLEDLVGAFIAKSSNRTTKLEEAVIAINTTVNGHSTAIKNIETQLGQLVSVVSTMSKGKAPAEQEKTQME
        RNHENFSYAN +NVL  PPGF  Q  E K  +EDL+  FI ++  R  K E  +  I T  N  +  +K++E Q+GQL + V   S GK P++ E    +
Subjt:  RNHENFSYANTKNVLN-PPGFAPQTQENK-KLEDLVGAFIAKSSNRTTKLEEAVIAINTTVNGHSTAIKNIETQLGQLVSVVSTMSKGKAPAEQEKTQME

Query:  YCKAITV
        +CKAIT+
Subjt:  YCKAITV

XP_024032903.1 uncharacterized protein LOC112095347 [Morus notabilis]3.7e-1345.79Show/hide
Query:  RNHENFSYANTKNVLNPP-GFAPQTQENK-KLEDLVGAFIAKSSNRTTKLEEAVIAINTTVNGHSTAIKNIETQLGQLVSVVSTMSKGKAPAEQEKTQME
        RNHENFSYAN +NVL PP GF  Q  E K  +EDL+  FI ++  R  K E  +  I T  N  +  +K++E Q+GQL +VV   S GK P++ E    +
Subjt:  RNHENFSYANTKNVLNPP-GFAPQTQENK-KLEDLVGAFIAKSSNRTTKLEEAVIAINTTVNGHSTAIKNIETQLGQLVSVVSTMSKGKAPAEQEKTQME

Query:  YCKAITV
        +CKAIT+
Subjt:  YCKAITV

TrEMBL top hitse value%identityAlignment
A0A2P5A3N0 Uncharacterized protein2.2e-1134.75Show/hide
Query:  RNHENFSYANTKNVLNPPGFAPQTQENKK--LEDLVGAFIAKSSNRTTKLEEAVIAINTTVNGHSTAIKNIETQLGQLVSVVSTMSKGKAPAEQEKTQME
        RNHENFSYAN KNVL PP    Q  E KK  LED++  FI ++  R  K E  +  I T  N  +  +K++E Q+G+L + +      K P++ E    +
Subjt:  RNHENFSYANTKNVLNPPGFAPQTQENKK--LEDLVGAFIAKSSNRTTKLEEAVIAINTTVNGHSTAIKNIETQLGQLVSVVSTMSKGKAPAEQEKTQME

Query:  YCKAITVHQEEFAMSNKDLGKKSYPCCDQLGQPEKTQVKSP
        +CKAIT+  E+     K +        D +G+     +  P
Subjt:  YCKAITVHQEEFAMSNKDLGKKSYPCCDQLGQPEKTQVKSP

A0A2P5B1T0 Uncharacterized protein9.2e-1039.62Show/hide
Query:  NHENFSYANTKNVLNPPGFAPQTQENKK--LEDLVGAFIAKSSNRTTKLEEAVIAINTTVNGHSTAIKNIETQLGQLVSVVSTMSKGKAPAEQEKTQMEY
        NHENFSY N +NVL PP    Q+   KK  LED++  FI ++  R  K E  +  I    N  +  IK++E Q+GQL + +     GK P + E     +
Subjt:  NHENFSYANTKNVLNPPGFAPQTQENKK--LEDLVGAFIAKSSNRTTKLEEAVIAINTTVNGHSTAIKNIETQLGQLVSVVSTMSKGKAPAEQEKTQMEY

Query:  CKAITV
        CKAIT+
Subjt:  CKAITV

A0A2P5BPI6 Uncharacterized protein8.9e-1342.34Show/hide
Query:  YTRERNHENFSYANTKNVLN-PPGFAPQTQENK-KLEDLVGAFIAKSSNRTTKLEEAVIAINTTVNGHSTAIKNIETQLGQLVSVVSTMSKGKAPAEQEK
        Y   RNHENFSY NT+NVL  PPGF P   E K  LEDL+  FI ++  +  K E  +  I T  N  +  +K++E Q+GQL + +     GK P++ E 
Subjt:  YTRERNHENFSYANTKNVLN-PPGFAPQTQENK-KLEDLVGAFIAKSSNRTTKLEEAVIAINTTVNGHSTAIKNIETQLGQLVSVVSTMSKGKAPAEQEK

Query:  TQMEYCKAITV
           ++CKAIT+
Subjt:  TQMEYCKAITV

A0A6P9DWY0 uncharacterized protein LOC1183440263.4e-1243.93Show/hide
Query:  RNHENFSYANTKNVLNP-PGFAPQTQENK-KLEDLVGAFIAKSSNRTTKLEEAVIAINTTVNGHSTAIKNIETQLGQLVSVVSTMSKGKAPAEQEKTQME
        RNHEN SY NTKNVL P PGF  Q  E K  LED + +F+ +++ R  K +  +  I T  +    AIKNIE Q+GQL + ++   +G  P+  E    E
Subjt:  RNHENFSYANTKNVLNP-PGFAPQTQENK-KLEDLVGAFIAKSSNRTTKLEEAVIAINTTVNGHSTAIKNIETQLGQLVSVVSTMSKGKAPAEQEKTQME

Query:  YCKAITV
         CKAIT+
Subjt:  YCKAITV

A0A803P9R0 Uncharacterized protein2.0e-0942.72Show/hide
Query:  RNHENFSYANTKNVLN-PPGF-APQTQENKKLEDLVGAFIAKSSNRTTKLEEAVIAINTTVNGHSTAIKNIETQLGQLVSVVSTMSKGKAPAEQEKTQME
        RNHEN SY NTKN+L  PPGF A Q  E K LED++G F+ +SS R  K E  +  I T ++    ++KNIE Q+GQL   ++  S       Q K + E
Subjt:  RNHENFSYANTKNVLN-PPGF-APQTQENKKLEDLVGAFIAKSSNRTTKLEEAVIAINTTVNGHSTAIKNIETQLGQLVSVVSTMSKGKAPAEQEKTQME

Query:  YCK
        + +
Subjt:  YCK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAATCAATTATACTCGGGAGAGGAACCATGAAAATTTCTCTTATGCCAATACTAAGAATGTTCTTAATCCCCCTGGTTTTGCCCCTCAAACTCAAGAAAATAAAAA
GTTAGAGGATCTTGTTGGAGCTTTCATTGCAAAGTCAAGTAACAGGACAACCAAATTAGAGGAAGCAGTCATTGCCATCAACACCACAGTGAATGGCCACAGTACAGCCA
TCAAGAACATTGAGACTCAGCTGGGACAGTTGGTAAGTGTTGTGAGCACCATGAGTAAAGGTAAGGCCCCAGCTGAGCAAGAGAAAACCCAGATGGAGTACTGTAAGGCA
ATCACTGTGCACCAGGAGGAATTTGCAATGAGTAATAAAGATTTAGGCAAAAAGAGCTACCCCTGTTGTGATCAGTTAGGCCAACCAGAGAAAACTCAGGTTAAGAGTCC
CTGCAACAGAGTGGGTACCACCGCTCCACAGCCATTACAAGTTAAATGTGGATGCGTCGTTAGCAAACGGGGAGATGAGATCAGGCATGATTATCAGAAATCAAAAGGTG
AAGTGATGGCAGCCACAGAAAAGTTCAGGAGAACGAGTTGCAATGTAGAGTGGGCAGAAGCTCAGACGCTGGTAGATGGAGTACATCTAGCTATGGATTCAGGCTTATCA
CCAGTTTGGGAGATGGATTCCAAAATTGTTTGGAATTTACTTCATGATCGAGATCAATATCTAAATGAACTAGCATCGTTAATCCACCAACTCAAACTTTTGGCCACAGA
TCATCACATCAAGGGTTTCATTCTAATCTCAATGGATGGCAATAAAGTAGCTCACCAGTTAGCTAACCATGTTCGTAGAACAAAACATTCTGCAATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAATCAATTATACTCGGGAGAGGAACCATGAAAATTTCTCTTATGCCAATACTAAGAATGTTCTTAATCCCCCTGGTTTTGCCCCTCAAACTCAAGAAAATAAAAA
GTTAGAGGATCTTGTTGGAGCTTTCATTGCAAAGTCAAGTAACAGGACAACCAAATTAGAGGAAGCAGTCATTGCCATCAACACCACAGTGAATGGCCACAGTACAGCCA
TCAAGAACATTGAGACTCAGCTGGGACAGTTGGTAAGTGTTGTGAGCACCATGAGTAAAGGTAAGGCCCCAGCTGAGCAAGAGAAAACCCAGATGGAGTACTGTAAGGCA
ATCACTGTGCACCAGGAGGAATTTGCAATGAGTAATAAAGATTTAGGCAAAAAGAGCTACCCCTGTTGTGATCAGTTAGGCCAACCAGAGAAAACTCAGGTTAAGAGTCC
CTGCAACAGAGTGGGTACCACCGCTCCACAGCCATTACAAGTTAAATGTGGATGCGTCGTTAGCAAACGGGGAGATGAGATCAGGCATGATTATCAGAAATCAAAAGGTG
AAGTGATGGCAGCCACAGAAAAGTTCAGGAGAACGAGTTGCAATGTAGAGTGGGCAGAAGCTCAGACGCTGGTAGATGGAGTACATCTAGCTATGGATTCAGGCTTATCA
CCAGTTTGGGAGATGGATTCCAAAATTGTTTGGAATTTACTTCATGATCGAGATCAATATCTAAATGAACTAGCATCGTTAATCCACCAACTCAAACTTTTGGCCACAGA
TCATCACATCAAGGGTTTCATTCTAATCTCAATGGATGGCAATAAAGTAGCTCACCAGTTAGCTAACCATGTTCGTAGAACAAAACATTCTGCAATCTGA
Protein sequenceShow/hide protein sequence
MRINYTRERNHENFSYANTKNVLNPPGFAPQTQENKKLEDLVGAFIAKSSNRTTKLEEAVIAINTTVNGHSTAIKNIETQLGQLVSVVSTMSKGKAPAEQEKTQMEYCKA
ITVHQEEFAMSNKDLGKKSYPCCDQLGQPEKTQVKSPCNRVGTTAPQPLQVKCGCVVSKRGDEIRHDYQKSKGEVMAATEKFRRTSCNVEWAEAQTLVDGVHLAMDSGLS
PVWEMDSKIVWNLLHDRDQYLNELASLIHQLKLLATDHHIKGFILISMDGNKVAHQLANHVRRTKHSAI