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Spg011209 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011209
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUBP1-associated protein 2C-like
Genome locationscaffold5:7640550..7640846
RNA-Seq ExpressionSpg011209
SyntenySpg011209
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7017564.1 UBP1-associated protein 2C [Cucurbita argyrosperma subsp. argyrosperma]1.3e-3988Show/hide
Query:  MVQAQVPPAIPSMPYPV-AAGYPQPGKPHGGVAPVGYAY-PQALASYPTSYPSPTAAHASYPSQPQMPYPHQVIGKKDAPGLHPTAPSGMGGYPYYMAKQ
        M+QAQVPPAIPSMPYPV AAGYPQPGKPHGGVAPVGYAY PQALASY  SYPSPT+AHASY SQPQ+P+PHQVIGKKDAPGLH T P+GMGGYPYYMAKQ
Subjt:  MVQAQVPPAIPSMPYPV-AAGYPQPGKPHGGVAPVGYAY-PQALASYPTSYPSPTAAHASYPSQPQMPYPHQVIGKKDAPGLHPTAPSGMGGYPYYMAKQ

XP_004136575.1 UBP1-associated protein 2C [Cucumis sativus]1.7e-4289.8Show/hide
Query:  MVQAQVPPAIPSMPYPVAAGYPQPGKPHGGVAPVGYAYPQALASYPTSYPSPTAAHASYPSQPQMPYPHQVIGKKDAPGLHPTAPSGMGGYPYYMAKQ
        M+QAQV PAIPSMPYPVAAGYPQPGKPHGGVAPVGYAYPQAL SYP SYPSPT AHASY SQPQMPYPHQVIGKKDA GLHP  P+GMGGYPYYMAKQ
Subjt:  MVQAQVPPAIPSMPYPVAAGYPQPGKPHGGVAPVGYAYPQALASYPTSYPSPTAAHASYPSQPQMPYPHQVIGKKDAPGLHPTAPSGMGGYPYYMAKQ

XP_008443071.1 PREDICTED: UBP1-associated protein 2C-like [Cucumis melo]2.9e-4288.78Show/hide
Query:  MVQAQVPPAIPSMPYPVAAGYPQPGKPHGGVAPVGYAYPQALASYPTSYPSPTAAHASYPSQPQMPYPHQVIGKKDAPGLHPTAPSGMGGYPYYMAKQ
        M+QAQV PAIPSMPYPVAAGYPQPGKPHGGVAPVGYAYPQAL SYP SYPSPT AHASY SQPQMPYPHQ+IGKKDA GLHP  P+GMGGYPYYMAKQ
Subjt:  MVQAQVPPAIPSMPYPVAAGYPQPGKPHGGVAPVGYAYPQALASYPTSYPSPTAAHASYPSQPQMPYPHQVIGKKDAPGLHPTAPSGMGGYPYYMAKQ

XP_023526302.1 UBP1-associated protein 2C-like [Cucurbita pepo subsp. pepo]3.9e-3987Show/hide
Query:  MVQAQVPPAIPSMPYPV-AAGYPQPGKPHGGVAPVGYAY-PQALASYPTSYPSPTAAHASYPSQPQMPYPHQVIGKKDAPGLHPTAPSGMGGYPYYMAKQ
        M+QAQVPPAIPSMPYPV AAGYPQPGKPHGGV PVGYAY PQALASY  SYPSPT+AHASY SQPQMP+PHQVIGKKD PGLH T P+GMGGYPYYMAKQ
Subjt:  MVQAQVPPAIPSMPYPV-AAGYPQPGKPHGGVAPVGYAY-PQALASYPTSYPSPTAAHASYPSQPQMPYPHQVIGKKDAPGLHPTAPSGMGGYPYYMAKQ

XP_038906210.1 UBP1-associated protein 2C-like [Benincasa hispida]2.3e-3987.76Show/hide
Query:  MVQAQVPPAIPSMPYPVAAGYPQPGKPHGGVAPVGYAYPQALASYPTSYPSPTAAHASYPSQPQMPYPHQVIGKKDAPGLHPTAPSGMGGYPYYMAKQ
        M+QAQV  AIPSMPYPVAAGYPQPGKPHG V PVGYAYPQALASYP SYPSPT AHASY SQPQMPYPHQVIGKKDA GLHP  P GMGGYPYYMAKQ
Subjt:  MVQAQVPPAIPSMPYPVAAGYPQPGKPHGGVAPVGYAYPQALASYPTSYPSPTAAHASYPSQPQMPYPHQVIGKKDAPGLHPTAPSGMGGYPYYMAKQ

TrEMBL top hitse value%identityAlignment
A0A0A0LEH0 Uncharacterized protein8.1e-4389.8Show/hide
Query:  MVQAQVPPAIPSMPYPVAAGYPQPGKPHGGVAPVGYAYPQALASYPTSYPSPTAAHASYPSQPQMPYPHQVIGKKDAPGLHPTAPSGMGGYPYYMAKQ
        M+QAQV PAIPSMPYPVAAGYPQPGKPHGGVAPVGYAYPQAL SYP SYPSPT AHASY SQPQMPYPHQVIGKKDA GLHP  P+GMGGYPYYMAKQ
Subjt:  MVQAQVPPAIPSMPYPVAAGYPQPGKPHGGVAPVGYAYPQALASYPTSYPSPTAAHASYPSQPQMPYPHQVIGKKDAPGLHPTAPSGMGGYPYYMAKQ

A0A1S3B7X8 UBP1-associated protein 2C-like1.4e-4288.78Show/hide
Query:  MVQAQVPPAIPSMPYPVAAGYPQPGKPHGGVAPVGYAYPQALASYPTSYPSPTAAHASYPSQPQMPYPHQVIGKKDAPGLHPTAPSGMGGYPYYMAKQ
        M+QAQV PAIPSMPYPVAAGYPQPGKPHGGVAPVGYAYPQAL SYP SYPSPT AHASY SQPQMPYPHQ+IGKKDA GLHP  P+GMGGYPYYMAKQ
Subjt:  MVQAQVPPAIPSMPYPVAAGYPQPGKPHGGVAPVGYAYPQALASYPTSYPSPTAAHASYPSQPQMPYPHQVIGKKDAPGLHPTAPSGMGGYPYYMAKQ

A0A5A7TKB5 UBP1-associated protein 2C-like1.4e-4288.78Show/hide
Query:  MVQAQVPPAIPSMPYPVAAGYPQPGKPHGGVAPVGYAYPQALASYPTSYPSPTAAHASYPSQPQMPYPHQVIGKKDAPGLHPTAPSGMGGYPYYMAKQ
        M+QAQV PAIPSMPYPVAAGYPQPGKPHGGVAPVGYAYPQAL SYP SYPSPT AHASY SQPQMPYPHQ+IGKKDA GLHP  P+GMGGYPYYMAKQ
Subjt:  MVQAQVPPAIPSMPYPVAAGYPQPGKPHGGVAPVGYAYPQALASYPTSYPSPTAAHASYPSQPQMPYPHQVIGKKDAPGLHPTAPSGMGGYPYYMAKQ

A0A6J1DZI6 UBP1-associated protein 2C-like3.5e-3886.6Show/hide
Query:  MVQAQVPPAIPSMPYPVAAGYPQPGKPHGGVAPVGYAYPQALASYPTSYPSPTAAHASYPSQPQMPYPHQVIGKKDAPGLHPTAPSGMGGYPYYMAK
        MVQAQV PAIPSMPYPVAAGYPQPGK HG VAPVGY YPQA A YP SYPSPTAAHASY  QPQMPYPHQ IG K+APGLHPTAP+GMGGYPYYMAK
Subjt:  MVQAQVPPAIPSMPYPVAAGYPQPGKPHGGVAPVGYAYPQALASYPTSYPSPTAAHASYPSQPQMPYPHQVIGKKDAPGLHPTAPSGMGGYPYYMAK

A0A6J1J4I3 UBP1-associated protein 2C-like1.6e-3887Show/hide
Query:  MVQAQVPPAIPSMPYPV-AAGYPQPGKPHGGVAPVGYAY-PQALASYPTSYPSPTAAHASYPSQPQMPYPHQVIGKKDAPGLHPTAPSGMGGYPYYMAKQ
        M+QAQVPPAIPSMPYPV AAGYPQPGKPHGGVAPVGYAY PQALASY  SYPSPT+AHASY S PQMP+PHQVIGKKDAPGLH T P+GMG YPYYMAKQ
Subjt:  MVQAQVPPAIPSMPYPV-AAGYPQPGKPHGGVAPVGYAY-PQALASYPTSYPSPTAAHASYPSQPQMPYPHQVIGKKDAPGLHPTAPSGMGGYPYYMAKQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCAGGCACAAGTACCCCCAGCTATTCCTTCTATGCCATACCCTGTAGCAGCTGGATATCCTCAACCTGGAAAACCACATGGCGGTGTTGCCCCTGTTGGTTATGC
TTATCCCCAAGCTCTTGCATCATATCCTACTTCGTATCCAAGTCCTACGGCAGCACATGCTTCATATCCGAGCCAACCCCAAATGCCATACCCCCATCAAGTAATTGGTA
AGAAAGATGCTCCTGGACTTCACCCGACTGCACCTTCTGGAATGGGAGGCTATCCATATTATATGGCGAAACAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGCAGGCACAAGTACCCCCAGCTATTCCTTCTATGCCATACCCTGTAGCAGCTGGATATCCTCAACCTGGAAAACCACATGGCGGTGTTGCCCCTGTTGGTTATGC
TTATCCCCAAGCTCTTGCATCATATCCTACTTCGTATCCAAGTCCTACGGCAGCACATGCTTCATATCCGAGCCAACCCCAAATGCCATACCCCCATCAAGTAATTGGTA
AGAAAGATGCTCCTGGACTTCACCCGACTGCACCTTCTGGAATGGGAGGCTATCCATATTATATGGCGAAACAATAG
Protein sequenceShow/hide protein sequence
MVQAQVPPAIPSMPYPVAAGYPQPGKPHGGVAPVGYAYPQALASYPTSYPSPTAAHASYPSQPQMPYPHQVIGKKDAPGLHPTAPSGMGGYPYYMAKQ