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Spg011225 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011225
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold5:8082027..8083866
RNA-Seq ExpressionSpg011225
SyntenySpg011225
Gene Ontology termsNA
InterPro domainsIPR009027 - Ribosomal protein L9/RNase H1, N-terminal
IPR011320 - Ribonuclease H1, N-terminal
IPR037056 - Ribonuclease H1, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
No hits found
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
Q07762 Ribonuclease H8.6e-0442Show/hide
Query:  GVYMTWYDCSSQVHGFSGAVYQSYDTLDATKGTYIAYSMGVDDRSMDAGE
        G+Y TW  CS QV GFSGAVY+S+ TL   +    A+         D G+
Subjt:  GVYMTWYDCSSQVHGFSGAVYQSYDTLDATKGTYIAYSMGVDDRSMDAGE
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGGTGTTTACATGACGTGGTACGATTGTTCAAGTCAAGTACATGGCTTTAGTGGCGCAGTATACCAGTCATATGACACGTTGGATGCCACGAAAGGAACATACAT
CGCTTACAGCATGGGAGTGGATGACCGTTCGATGGATGCAGGAGAACTTTACCTTCATCCAACGCGCTGGTTCTTGCTTGGTGTAGTCGTAGTCCTACTAGGAGAGACCG
TATCTAGGCACTTCAATGCCGTGTTGGATGTGGGACGAATCACACAAATTGGAGCTAATTCGGACGATTTAGAGAGTTTTCAAGCTAACTTGAAGTCTGTGGATCTCGAG
GAGGTGAGAAGACCCGAGCGAATCATGACGAGTCGGAAGAATAGTCCCAAGGAGTCAAAGGTTCGAGTCCCAAGCCAAGCAAGCAACAAAAGAAGACCAAAAGAAGAAAT
GAAGATACGCTGGAAAAGGGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTGGTGTTTACATGACGTGGTACGATTGTTCAAGTCAAGTACATGGCTTTAGTGGCGCAGTATACCAGTCATATGACACGTTGGATGCCACGAAAGGAACATACAT
CGCTTACAGCATGGGAGTGGATGACCGTTCGATGGATGCAGGAGAACTTTACCTTCATCCAACGCGCTGGTTCTTGCTTGGTGTAGTCGTAGTCCTACTAGGAGAGACCG
TATCTAGGCACTTCAATGCCGTGTTGGATGTGGGACGAATCACACAAATTGGAGCTAATTCGGACGATTTAGAGAGTTTTCAAGCTAACTTGAAGTCTGTGGATCTCGAG
GAGGTGAGAAGACCCGAGCGAATCATGACGAGTCGGAAGAATAGTCCCAAGGAGTCAAAGGTTCGAGTCCCAAGCCAAGCAAGCAACAAAAGAAGACCAAAAGAAGAAAT
GAAGATACGCTGGAAAAGGGCATAG
Protein sequenceShow/hide protein sequence
MLGVYMTWYDCSSQVHGFSGAVYQSYDTLDATKGTYIAYSMGVDDRSMDAGELYLHPTRWFLLGVVVVLLGETVSRHFNAVLDVGRITQIGANSDDLESFQANLKSVDLE
EVRRPERIMTSRKNSPKESKVRVPSQASNKRRPKEEMKIRWKRA