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Spg011233 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011233
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold8:23980345..23990050
RNA-Seq ExpressionSpg011233
SyntenySpg011233
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025357.1 hypothetical protein E6C27_scaffold1204G00410 [Cucumis melo var. makuwa]3.9e-2267.78Show/hide
Query:  LFGLSYTEGTKRPRGNRSSLQTRELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        LFGLSY EGTKRP+GNR SLQT ELDKT   +          L TLSVLRDND +VEIELPVPDTLPTSAES RS+S+TW+ELY ES+++
Subjt:  LFGLSYTEGTKRPRGNRSSLQTRELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.0e-2352.08Show/hide
Query:  LFGLSYTEGTKRPRGNRSSLQTRELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI----------
        LFGL Y EGTKRPRGNR+SLQT ELDKT              L TLSVLRDNDA+VEIELPVPDTLPTSAESS S+SSTW+EL  E V++          
Subjt:  LFGLSYTEGTKRPRGNRSSLQTRELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI----------

Query:  ---VNVLVYVSGGSTGPPKGWLRQDNMQADHRTLTVRTRGGDRG
           ++++  VS GST   +G    DN+   H     +T GG  G
Subjt:  ---VNVLVYVSGGSTGPPKGWLRQDNMQADHRTLTVRTRGGDRG

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]6.8e-1945.51Show/hide
Query:  SSYFPNRVMSGLHLVYIRRRKKKKIFVVLRLKKIGKAHAKPAIAESEINLSTSGFLFGLSYTEGTKRPRGNRSSLQTRELDKTPEAIWYRVHTGYIPLLT
        S YF  RV           +++++ F  LRLKK+ K      +      ++    L GLSY EGT RPRGNR SLQT +LDKT              L T
Subjt:  SSYFPNRVMSGLHLVYIRRRKKKKIFVVLRLKKIGKAHAKPAIAESEINLSTSGFLFGLSYTEGTKRPRGNRSSLQTRELDKTPEAIWYRVHTGYIPLLT

Query:  LSVLRDNDAI-----------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        LSVLRDNDA+           VEIELP+PDTLPT AES  S+SSTW+ELY ESV++
Subjt:  LSVLRDNDAI-----------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]9.8e-1849.62Show/hide
Query:  RGNRSSLQTRELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI-------------VNVLVYVSGG
        RGNRSSLQ+ ELD T             PL TLSVLRDNDA+VEIELPVPDTLPTSAESS S+SSTW+ELY ESV++             ++++  V  G
Subjt:  RGNRSSLQTRELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI-------------VNVLVYVSGG

Query:  STGPPKGWLRQDNMQADHRTLTVRTRGGDRG
        STG  +G    D++   H     +T GG  G
Subjt:  STGPPKGWLRQDNMQADHRTLTVRTRGGDRG

TYK21916.1 hypothetical protein E5676_scaffold494G00570 [Cucumis melo var. makuwa]6.6e-2268.48Show/hide
Query:  PRGNRSSLQTRELDKTISIDYMTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSISSSSYFPNRVMSGLHLVYI
        PRGNRSSLQT ELD TISIDYMTEILS RLYGT+CT                  VEIELPVPD LPTSAESS S+SSYF N+VMSGL+LVY+
Subjt:  PRGNRSSLQTRELDKTISIDYMTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSISSSSYFPNRVMSGLHLVYI

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein2.9e-2352.08Show/hide
Query:  LFGLSYTEGTKRPRGNRSSLQTRELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI----------
        LFGL Y EGTKRPRGNR+SLQT ELDKT              L TLSVLRDNDA+VEIELPVPDTLPTSAESS S+SSTW+EL  E V++          
Subjt:  LFGLSYTEGTKRPRGNRSSLQTRELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI----------

Query:  ---VNVLVYVSGGSTGPPKGWLRQDNMQADHRTLTVRTRGGDRG
           ++++  VS GST   +G    DN+   H     +T GG  G
Subjt:  ---VNVLVYVSGGSTGPPKGWLRQDNMQADHRTLTVRTRGGDRG

A0A5A7UGD0 Uncharacterized protein3.3e-1945.51Show/hide
Query:  SSYFPNRVMSGLHLVYIRRRKKKKIFVVLRLKKIGKAHAKPAIAESEINLSTSGFLFGLSYTEGTKRPRGNRSSLQTRELDKTPEAIWYRVHTGYIPLLT
        S YF  RV           +++++ F  LRLKK+ K      +      ++    L GLSY EGT RPRGNR SLQT +LDKT              L T
Subjt:  SSYFPNRVMSGLHLVYIRRRKKKKIFVVLRLKKIGKAHAKPAIAESEINLSTSGFLFGLSYTEGTKRPRGNRSSLQTRELDKTPEAIWYRVHTGYIPLLT

Query:  LSVLRDNDAI-----------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        LSVLRDNDA+           VEIELP+PDTLPT AES  S+SSTW+ELY ESV++
Subjt:  LSVLRDNDAI-----------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

A0A5A7V9N3 Reverse transcriptase4.8e-1849.62Show/hide
Query:  RGNRSSLQTRELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI-------------VNVLVYVSGG
        RGNRSSLQ+ ELD T             PL TLSVLRDNDA+VEIELPVPDTLPTSAESS S+SSTW+ELY ESV++             ++++  V  G
Subjt:  RGNRSSLQTRELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI-------------VNVLVYVSGG

Query:  STGPPKGWLRQDNMQADHRTLTVRTRGGDRG
        STG  +G    D++   H     +T GG  G
Subjt:  STGPPKGWLRQDNMQADHRTLTVRTRGGDRG

A0A5D3DE96 Uncharacterized protein3.2e-2268.48Show/hide
Query:  PRGNRSSLQTRELDKTISIDYMTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSISSSSYFPNRVMSGLHLVYI
        PRGNRSSLQT ELD TISIDYMTEILS RLYGT+CT                  VEIELPVPD LPTSAESS S+SSYF N+VMSGL+LVY+
Subjt:  PRGNRSSLQTRELDKTISIDYMTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSISSSSYFPNRVMSGLHLVYI

A0A5D3DIM8 Uncharacterized protein1.9e-2267.78Show/hide
Query:  LFGLSYTEGTKRPRGNRSSLQTRELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        LFGLSY EGTKRP+GNR SLQT ELDKT   +          L TLSVLRDND +VEIELPVPDTLPTSAES RS+S+TW+ELY ES+++
Subjt:  LFGLSYTEGTKRPRGNRSSLQTRELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTGGGAATCCCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCAGGGAACTAGATAAGACAATTTCTATTGACTACATGACTGAGATATT
GAGCCCGAGGCTATATGGTACCATGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCATATCAAGCTCCAGTTATTTTC
CAAACCGAGTTATGTCAGGGCTGCACCTCGTGTATATTAGAAGGAGGAAGAAGAAGAAGATTTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCA
GCCATAGCAGAATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGCCAAGAGGAAATAGGTCGAGCCTACAAACCAG
GGAACTAGATAAAACACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTATCGTAGAGATCGAGC
TCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAGTACATGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTTTTGGTCTAC
GTTTCAGGAGGGTCAACGGGCCCTCCGAAGGGATGGTTGCGCCAGGACAACATGCAGGCGGATCATAGGACTCTCACGGTGCGAACTAGGGGTGGAGACCGAGGGATACG
TTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTGGGAATCCCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCAGGGAACTAGATAAGACAATTTCTATTGACTACATGACTGAGATATT
GAGCCCGAGGCTATATGGTACCATGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCATATCAAGCTCCAGTTATTTTC
CAAACCGAGTTATGTCAGGGCTGCACCTCGTGTATATTAGAAGGAGGAAGAAGAAGAAGATTTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCA
GCCATAGCAGAATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGCCAAGAGGAAATAGGTCGAGCCTACAAACCAG
GGAACTAGATAAAACACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTATCGTAGAGATCGAGC
TCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAGTACATGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTTTTGGTCTAC
GTTTCAGGAGGGTCAACGGGCCCTCCGAAGGGATGGTTGCGCCAGGACAACATGCAGGCGGATCATAGGACTCTCACGGTGCGAACTAGGGGTGGAGACCGAGGGATACG
TTGA
Protein sequenceShow/hide protein sequence
MGWESRFHFFRPRGNRSSLQTRELDKTISIDYMTEILSPRLYGTMCTQVEIELPVPDTLPTSAESSISSSSYFPNRVMSGLHLVYIRRRKKKKIFVVLRLKKIGKAHAKP
AIAESEINLSTSGFLFGLSYTEGTKRPRGNRSSLQTRELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVLVY
VSGGSTGPPKGWLRQDNMQADHRTLTVRTRGGDRGIR