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Spg011235 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011235
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold8:24437640..24438681
RNA-Seq ExpressionSpg011235
SyntenySpg011235
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFZ12862.1 hypothetical protein Acr_23g0012470 [Actinidia rufa]1.7e-3232.51Show/hide
Query:  MDFHGVSEATKCRAFAFTLIGMARQWFSKLPRKSIGLFKELARGFVTQFLGTRDRRKPQINLLTVKQGPRESLRDYIARFSNEVLQVEGYDNGVALTVVI
        M   G S+   C+AF+ TL G AR WF KL   +I  F +L+R FV  F+  R+R+K   +L T+ Q   ESL+D++ RF+  +L+V+   + V +  ++
Subjt:  MDFHGVSEATKCRAFAFTLIGMARQWFSKLPRKSIGLFKELARGFVTQFLGTRDRRKPQINLLTVKQGPRESLRDYIARFSNEVLQVEGYDNGVALTVVI

Query:  SG----------------DPKEGRGR----GDLKGKFEYTSLSVPPEQILVVVQNTDLLKRPERLKTNPDRRNKHKYCMFHQDHGHTSRNCIQLRDKIES
         G                DPK    R       + +F    L+ P  Q+L  +++ + +K P ++KT+P +RN++KYC FH+DHGH + +C QL+++I  
Subjt:  SG----------------DPKEGRGR----GDLKGKFEYTSLSVPPEQILVVVQNTDLLKRPERLKTNPDRRNKHKYCMFHQDHGHTSRNCIQLRDKIES

Query:  LIKEGYLKEFVSERGPAGGDSSRKRKAAAREARLEPRHQGMYS
        LIK GYL++++++R P      R          ++  H G  S
Subjt:  LIKEGYLKEFVSERGPAGGDSSRKRKAAAREARLEPRHQGMYS

KAG8382474.1 hypothetical protein BUALT_Bualt05G0081000 [Buddleja alternifolia]6.0e-3338.12Show/hide
Query:  MDFHGVSEATKCRAFAFTLIGMARQWFSKLPRKSIGLFKELARGFVTQFLGTRDRRKPQINLLTVKQGPRESLRDYIARFSNEVLQVEGYDNGVALTVVI
        M FHGV++A KCRAF+ TL   AR WFS LP  SIG FK+LA+ F++ F  ++  +K   +L+ V+Q   ESLRD+I RF+ E L+V+  D  VAL  ++
Subjt:  MDFHGVSEATKCRAFAFTLIGMARQWFSKLPRKSIGLFKELARGFVTQFLGTRDRRKPQINLLTVKQGPRESLRDYIARFSNEVLQVEGYDNGVALTVVI

Query:  SGDPKEGRGRG--------DLKGKFEYTSLSVPPEQIL---VVVQNTDLLKRPERLKTNPDRRNKHKYCMFHQDHGHTSRNCIQLRDKIESLIKEGYLKE
        +G  K  R           DL   F      +  E++    +  ++ + +K P +++T  ++RN+++YC +H+DHGH + +C  L+ +IE LIK G+L  
Subjt:  SGDPKEGRGRG--------DLKGKFEYTSLSVPPEQIL---VVVQNTDLLKRPERLKTNPDRRNKHKYCMFHQDHGHTSRNCIQLRDKIESLIKEGYLKE

Query:  FV
        F+
Subjt:  FV

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]1.5e-4437.65Show/hide
Query:  MDFHGVSEATKCRAFAFTLIGMARQWFSKLPRKSIGLFKELARGFVTQFLGTRDRRKPQINLLTVKQGPRESLRDYIARFSNEVLQVEGYDNGVALTVVI
        MD +GVSEA +CR F+ TL G AR WF +L R SI  FK LAR FVTQF+G R R +P   LLT+KQ   ESLRDY+ARF+ E LQVEG  + V+L   +
Subjt:  MDFHGVSEATKCRAFAFTLIGMARQWFSKLPRKSIGLFKELARGFVTQFLGTRDRRKPQINLLTVKQGPRESLRDYIARFSNEVLQVEGYDNGVALTVVI

Query:  SG----------------------------------------------DPK-------------EGRGRGDLKG---KFE-YTSLSVPPEQILVVVQNTD
        SG                                              DPK             E R R   K    KFE YT  +VP EQ+L+ +++  
Subjt:  SG----------------------------------------------DPK-------------EGRGRGDLKG---KFE-YTSLSVPPEQILVVVQNTD

Query:  LLKRPERLKTNPDRRNKHKYCMFHQDHGHTSRNCIQLRDKIESLIKEGYLKEFVSE---------------------RGPAGGDSSRKRKAAAREARLEP
        LLK PER+K +  +R+K +YC+FH+DHGH +++C  L++++E LI+ GYLKE+V E                      GP   +S RKRKA  REAR   
Subjt:  LLKRPERLKTNPDRRNKHKYCMFHQDHGHTSRNCIQLRDKIESLIKEGYLKEFVSE---------------------RGPAGGDSSRKRKAAAREARLEP

Query:  RHQGMYSLQFEKLTFALEFTKKEA
            +Y          +EF++ EA
Subjt:  RHQGMYSLQFEKLTFALEFTKKEA

XP_024041095.1 uncharacterized protein LOC112098853 [Citrus clementina]1.4e-3733.54Show/hide
Query:  MDFHGVSEATKCRAFAFTLIGMARQWFSKLPRKSIGLFKELARGFVTQFLGTRDRRKPQINLLTVKQGPRESLRDYIARFSNEVLQVEGYDNGVALTVVI
        M+  G S+A  CRAF  TL+G AR+WF +L   SI  F +L+R F + F   R R KP   LLTVKQ   E+LRDYI R++NE+ QV+GYD+G+AL+ ++
Subjt:  MDFHGVSEATKCRAFAFTLIGMARQWFSKLPRKSIGLFKELARGFVTQFLGTRDRRKPQINLLTVKQGPRESLRDYIARFSNEVLQVEGYDNGVALTVVI

Query:  SG-----------------------------------------------------DPKEGR-----------------------GRGDLKGKF-EYTSLS
         G                                                     D +E R                        R  L  +F  +T L+
Subjt:  SG-----------------------------------------------------DPKEGR-----------------------GRGDLKGKF-EYTSLS

Query:  VPPEQILVVVQNTDLLKRPERLKTNPDRRNKHKYCMFHQDHGHTSRNCIQLRDKIESLIKEGYLKEFV--------SER---------------------
         P EQIL+ V+N  L + P  +KTNP RRN +KYC FH+DHGH +  C +L+++IESL+++G L+E+V        SE+                     
Subjt:  VPPEQILVVVQNTDLLKRPERLKTNPDRRNKHKYCMFHQDHGHTSRNCIQLRDKIESLIKEGYLKEFV--------SER---------------------

Query:  ------GPAGGDSSRKRKAAAREARLEP
              GPA GDS + RK  AR+AR EP
Subjt:  ------GPAGGDSSRKRKAAAREARLEP

XP_024042801.1 uncharacterized protein LOC112099618 [Citrus clementina]3.2e-3434.87Show/hide
Query:  MDFHGVSEATKCRAFAFTLIGMARQWFSKLPRKSIGLFKELARGFVTQFLGTRDRRKPQINLLTVKQGPRESLRDYIARFSNEVLQVEGYDNGVALTVVI
        M+  G S A  CRAF+ TLI  AR+W+ KL   SI  F +L++  V QF+G RD++ P    L VKQG  ESL+D I RF+ EV++VE Y + VALT ++
Subjt:  MDFHGVSEATKCRAFAFTLIGMARQWFSKLPRKSIGLFKELARGFVTQFLGTRDRRKPQINLLTVKQGPRESLRDYIARFSNEVLQVEGYDNGVALTVVI

Query:  SG--------------------------------------------DPK---------------------EGRGRGDLKGKF-EYTSLSVPPEQILVVVQ
         G                                             P+                     E +G   L+ +F  YT L++P EQ+L+ ++
Subjt:  SG--------------------------------------------DPK---------------------EGRGRGDLKGKF-EYTSLSVPPEQILVVVQ

Query:  NTDLLKRPERLKTNPDRRNKHKYCMFHQDHGHTSRNCIQLRDKIESLIKEGYLKEFVSERG
        N DLL++P+ +K  P+RR++ KYC +H+DH H   +C  L+++I+SLI+ GYLKEFV + G
Subjt:  NTDLLKRPERLKTNPDRRNKHKYCMFHQDHGHTSRNCIQLRDKIESLIKEGYLKEFVSERG

TrEMBL top hitse value%identityAlignment
A0A2N9HHE1 Ribonuclease H8.4e-3337.19Show/hide
Query:  MDFHGVSEATKCRAFAFTLIGMARQWFSKLPRKSIGLFKELARGFVTQFLGTRDRRKPQINLLTVKQGPRESLRDYIARFSNEVLQVEGYDNGVALTVVI
        M   GV +   CRAF  TL G AR WF KL   S+G F +L+  F   F+G +   +P  +LL V+Q   E+LR Y+ RF+ E L V+G D+ V LT  I
Subjt:  MDFHGVSEATKCRAFAFTLIGMARQWFSKLPRKSIGLFKELARGFVTQFLGTRDRRKPQINLLTVKQGPRESLRDYIARFSNEVLQVEGYDNGVALTVVI

Query:  SG------------DP-------------KEGRGRGDLKGKF-EYTSLSVPPEQILVVVQNTDLLKRPERLKTNPDRRNKHKYCMFHQDHGHTSRNCIQL
        SG            DP             +E R R     +F  +T L+ P ++I + +++   L+ P +L TNPDRR K KYC FH+DHGH + +C  L
Subjt:  SG------------DP-------------KEGRGRGDLKGKF-EYTSLSVPPEQILVVVQNTDLLKRPERLKTNPDRRNKHKYCMFHQDHGHTSRNCIQL

Query:  RDKIESLIKEGYLKEFVSERGPAGGDSSRKRKAAAREARLEP
        + +IE LIK+G L+ FV      G     + +    EAR  P
Subjt:  RDKIESLIKEGYLKEFVSERGPAGGDSSRKRKAAAREARLEP

A0A2N9IAR9 Ribonuclease H5.4e-3237.19Show/hide
Query:  MDFHGVSEATKCRAFAFTLIGMARQWFSKLPRKSIGLFKELARGFVTQFLGTRDRRKPQINLLTVKQGPRESLRDYIARFSNEVLQVEGYDNGVALTVVI
        M   GV +   CRAF  TL G AR WF KL   SIG F +L+  F   F+G +   +P  +LL V+Q   E+LR Y+ RF+ E L V+G D+ V LT  I
Subjt:  MDFHGVSEATKCRAFAFTLIGMARQWFSKLPRKSIGLFKELARGFVTQFLGTRDRRKPQINLLTVKQGPRESLRDYIARFSNEVLQVEGYDNGVALTVVI

Query:  SG------------DP-------------KEGRGRGDLKGKF-EYTSLSVPPEQILVVVQNTDLLKRPERLKTNPDRRNKHKYCMFHQDHGHTSRNCIQL
        SG            DP             +E R R     +F  +T L+ P ++I + +++   L+ P +L TNPDRR K KYC FH+DHGH + +C  L
Subjt:  SG------------DP-------------KEGRGRGDLKGKF-EYTSLSVPPEQILVVVQNTDLLKRPERLKTNPDRRNKHKYCMFHQDHGHTSRNCIQL

Query:  RDKIESLIKEGYLKEFVSERGPAGGDSSRKRKAAAREARLEP
        + +IE LIK+G L+ FV      G     + +    E R  P
Subjt:  RDKIESLIKEGYLKEFVSERGPAGGDSSRKRKAAAREARLEP

A0A6J1DWY0 uncharacterized protein LOC1110252937.3e-4537.65Show/hide
Query:  MDFHGVSEATKCRAFAFTLIGMARQWFSKLPRKSIGLFKELARGFVTQFLGTRDRRKPQINLLTVKQGPRESLRDYIARFSNEVLQVEGYDNGVALTVVI
        MD +GVSEA +CR F+ TL G AR WF +L R SI  FK LAR FVTQF+G R R +P   LLT+KQ   ESLRDY+ARF+ E LQVEG  + V+L   +
Subjt:  MDFHGVSEATKCRAFAFTLIGMARQWFSKLPRKSIGLFKELARGFVTQFLGTRDRRKPQINLLTVKQGPRESLRDYIARFSNEVLQVEGYDNGVALTVVI

Query:  SG----------------------------------------------DPK-------------EGRGRGDLKG---KFE-YTSLSVPPEQILVVVQNTD
        SG                                              DPK             E R R   K    KFE YT  +VP EQ+L+ +++  
Subjt:  SG----------------------------------------------DPK-------------EGRGRGDLKG---KFE-YTSLSVPPEQILVVVQNTD

Query:  LLKRPERLKTNPDRRNKHKYCMFHQDHGHTSRNCIQLRDKIESLIKEGYLKEFVSE---------------------RGPAGGDSSRKRKAAAREARLEP
        LLK PER+K +  +R+K +YC+FH+DHGH +++C  L++++E LI+ GYLKE+V E                      GP   +S RKRKA  REAR   
Subjt:  LLKRPERLKTNPDRRNKHKYCMFHQDHGHTSRNCIQLRDKIESLIKEGYLKEFVSE---------------------RGPAGGDSSRKRKAAAREARLEP

Query:  RHQGMYSLQFEKLTFALEFTKKEA
            +Y          +EF++ EA
Subjt:  RHQGMYSLQFEKLTFALEFTKKEA

A0A7J0DN86 Ribonuclease H4.2e-3236.92Show/hide
Query:  MDFHGVSEATKCRAFAFTLIGMARQWFSKLPRKSIGLFKELARGFVTQFLGTRDRRKPQINLLTVKQGPRESLRDYIARFSNEVLQVEGYDNGVALTVVI
        M   G S+   C+AF+ TL G AR WF KL   +I  F +L+R FV  F+  R+R+K   +L T+ Q   E+L+D++ RF+  +L+VE   + V +  ++
Subjt:  MDFHGVSEATKCRAFAFTLIGMARQWFSKLPRKSIGLFKELARGFVTQFLGTRDRRKPQINLLTVKQGPRESLRDYIARFSNEVLQVEGYDNGVALTVVI

Query:  SG-DPKEGRGR-GDLKGKFEYTSLSVPPEQILVVVQNTDLLKRPERLKTNPDRRNKHKYCMFHQDHGHTSRNCIQLRDKIESLIKEGYLKEFVSE
         G  P   R R    + +F    L  P  Q+L  +++ + +K P ++KT+P +RN++KYC FH+DHGH + +C QL+++I  LIK GYL++++++
Subjt:  SG-DPKEGRGR-GDLKGKFEYTSLSVPPEQILVVVQNTDLLKRPERLKTNPDRRNKHKYCMFHQDHGHTSRNCIQLRDKIESLIKEGYLKEFVSE

A0A7J0GPZ1 Retrotrans_gag domain-containing protein8.4e-3332.51Show/hide
Query:  MDFHGVSEATKCRAFAFTLIGMARQWFSKLPRKSIGLFKELARGFVTQFLGTRDRRKPQINLLTVKQGPRESLRDYIARFSNEVLQVEGYDNGVALTVVI
        M   G S+   C+AF+ TL G AR WF KL   +I  F +L+R FV  F+  R+R+K   +L T+ Q   ESL+D++ RF+  +L+V+   + V +  ++
Subjt:  MDFHGVSEATKCRAFAFTLIGMARQWFSKLPRKSIGLFKELARGFVTQFLGTRDRRKPQINLLTVKQGPRESLRDYIARFSNEVLQVEGYDNGVALTVVI

Query:  SG----------------DPKEGRGR----GDLKGKFEYTSLSVPPEQILVVVQNTDLLKRPERLKTNPDRRNKHKYCMFHQDHGHTSRNCIQLRDKIES
         G                DPK    R       + +F    L+ P  Q+L  +++ + +K P ++KT+P +RN++KYC FH+DHGH + +C QL+++I  
Subjt:  SG----------------DPKEGRGR----GDLKGKFEYTSLSVPPEQILVVVQNTDLLKRPERLKTNPDRRNKHKYCMFHQDHGHTSRNCIQLRDKIES

Query:  LIKEGYLKEFVSERGPAGGDSSRKRKAAAREARLEPRHQGMYS
        LIK GYL++++++R P      R          ++  H G  S
Subjt:  LIKEGYLKEFVSERGPAGGDSSRKRKAAAREARLEPRHQGMYS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTTCCACGGGGTGTCCGAGGCAACCAAATGTCGGGCATTCGCCTTCACCTTAATAGGGATGGCCAGACAATGGTTTAGCAAGTTACCTCGGAAGTCCATCGGGTT
GTTCAAGGAGTTGGCACGAGGCTTTGTTACGCAGTTCCTAGGAACCAGGGATCGACGCAAGCCACAGATCAACCTGCTAACCGTCAAACAGGGACCGAGAGAAAGCTTGC
GAGATTATATAGCAAGGTTCAGTAACGAGGTGTTGCAGGTAGAAGGGTATGACAATGGAGTTGCATTGACTGTTGTGATTTCAGGAGACCCTAAAGAAGGTCGAGGTCGA
GGAGACTTGAAGGGAAAATTTGAGTACACTTCTTTATCTGTCCCTCCTGAGCAGATCCTAGTAGTAGTGCAGAATACAGATCTGTTGAAGCGCCCAGAGAGACTCAAGAC
AAATCCAGACAGAAGAAACAAACATAAGTACTGCATGTTCCACCAGGACCATGGGCACACAAGCAGAAATTGCATACAGTTACGAGACAAGATAGAGAGTTTGATTAAGG
AAGGCTATCTGAAAGAGTTCGTTAGTGAAAGAGGTCCAGCTGGAGGAGACTCTAGTCGGAAAAGGAAAGCAGCAGCTCGAGAGGCTCGCCTTGAGCCAAGGCACCAAGGT
ATGTACTCACTCCAGTTTGAAAAACTTACATTTGCTCTGGAGTTTACAAAGAAAGAGGCTGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACTTCCACGGGGTGTCCGAGGCAACCAAATGTCGGGCATTCGCCTTCACCTTAATAGGGATGGCCAGACAATGGTTTAGCAAGTTACCTCGGAAGTCCATCGGGTT
GTTCAAGGAGTTGGCACGAGGCTTTGTTACGCAGTTCCTAGGAACCAGGGATCGACGCAAGCCACAGATCAACCTGCTAACCGTCAAACAGGGACCGAGAGAAAGCTTGC
GAGATTATATAGCAAGGTTCAGTAACGAGGTGTTGCAGGTAGAAGGGTATGACAATGGAGTTGCATTGACTGTTGTGATTTCAGGAGACCCTAAAGAAGGTCGAGGTCGA
GGAGACTTGAAGGGAAAATTTGAGTACACTTCTTTATCTGTCCCTCCTGAGCAGATCCTAGTAGTAGTGCAGAATACAGATCTGTTGAAGCGCCCAGAGAGACTCAAGAC
AAATCCAGACAGAAGAAACAAACATAAGTACTGCATGTTCCACCAGGACCATGGGCACACAAGCAGAAATTGCATACAGTTACGAGACAAGATAGAGAGTTTGATTAAGG
AAGGCTATCTGAAAGAGTTCGTTAGTGAAAGAGGTCCAGCTGGAGGAGACTCTAGTCGGAAAAGGAAAGCAGCAGCTCGAGAGGCTCGCCTTGAGCCAAGGCACCAAGGT
ATGTACTCACTCCAGTTTGAAAAACTTACATTTGCTCTGGAGTTTACAAAGAAAGAGGCTGCATGA
Protein sequenceShow/hide protein sequence
MDFHGVSEATKCRAFAFTLIGMARQWFSKLPRKSIGLFKELARGFVTQFLGTRDRRKPQINLLTVKQGPRESLRDYIARFSNEVLQVEGYDNGVALTVVISGDPKEGRGR
GDLKGKFEYTSLSVPPEQILVVVQNTDLLKRPERLKTNPDRRNKHKYCMFHQDHGHTSRNCIQLRDKIESLIKEGYLKEFVSERGPAGGDSSRKRKAAAREARLEPRHQG
MYSLQFEKLTFALEFTKKEAA