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Spg011236 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011236
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold8:24049584..24051154
RNA-Seq ExpressionSpg011236
SyntenySpg011236
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025361.1 uncharacterized protein E6C27_scaffold1204G00450 [Cucumis melo var. makuwa]1.9e-1760.78Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGP
        MTEILS RLYGTVCTQ                 VEIELPV DTL   AES  S+SS +           FNVSVGST IVRGDDVCWLHAVFRAK AGGP
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGP

Query:  GG
        GG
Subjt:  GG
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]2.8e-2162Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW                           FNVSVGSTGIVRGDDVCWLHAVFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-2164Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSV--------GSTGIVRGDDVCWLHAVFRAKLAGGPGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + V           GIVR DDVCWLHAVFRAK AGGPGGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSV--------GSTGIVRGDDVCWLHAVFRAKLAGGPGGG
TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]4.1e-2061.17Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGP
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +           FN+SV STGIVRGDDVCWLHAVFRAK  GGP
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGP

Query:  GGG
         GG
Subjt:  GGG
TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-2164Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSV--------GSTGIVRGDDVCWLHAVFRAKLAGGPGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + V           GIVR DDVCWLHAVFRAK AGGPGGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSV--------GSTGIVRGDDVCWLHAVFRAKLAGGPGGG
TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein1.4e-2162Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW                           FNVSVGSTGIVRGDDVCWLHAVFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG
A0A5A7VMG9 Reverse transcriptase8.0e-2264Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSV--------GSTGIVRGDDVCWLHAVFRAKLAGGPGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + V           GIVR DDVCWLHAVFRAK AGGPGGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSV--------GSTGIVRGDDVCWLHAVFRAKLAGGPGGG
A0A5D3BMJ4 Retrotrans_gag domain-containing protein2.0e-2061.17Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGP
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +           FN+SV STGIVRGDDVCWLHAVFRAK  GGP
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGP

Query:  GGG
         GG
Subjt:  GGG
A0A5D3DIE3 Retrotrans_gag domain-containing protein9.2e-1860.78Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGP
        MTEILS RLYGTVCTQ                 VEIELPV DTL   AES  S+SS +           FNVSVGST IVRGDDVCWLHAVFRAK AGGP
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGP

Query:  GG
        GG
Subjt:  GG
A0A5D3DX39 Reverse transcriptase8.0e-2264Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSV--------GSTGIVRGDDVCWLHAVFRAKLAGGPGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + V           GIVR DDVCWLHAVFRAK AGGPGGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSV--------GSTGIVRGDDVCWLHAVFRAKLAGGPGGG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGCTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAG
GGGGACATGAACAAAGGGATCTCGCCCTCTCATTGGCCCGAGAGGTTTTAGGTTTAGTGGTCAGACCACAAACCAATTGTTCATTAGGGACTCAGTGGAGACTTAAGGAA
ACAGATGTAACTTCAGGGGTAAAACGGACAATTGACCCAGCTGTAGTTACGAACAACCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGCTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAG
GGGGACATGAACAAAGGGATCTCGCCCTCTCATTGGCCCGAGAGGTTTTAGGTTTAGTGGTCAGACCACAAACCAATTGTTCATTAGGGACTCAGTGGAGACTTAAGGAA
ACAGATGTAACTTCAGGGGTAAAACGGACAATTGACCCAGCTGTAGTTACGAACAACCTGTGA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGHEQRDLALSLAREVLGLVVRPQTNCSLGTQWRLKE
TDVTSGVKRTIDPAVVTNNL