; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg011237 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011237
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold8:23637893..23640134
RNA-Seq ExpressionSpg011237
SyntenySpg011237
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]1.2e-2645.21Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEYRGLRLKKIGKSSCKASHCRIWVQTVNLWFFI------RFELQRRNQEVRCRVFENEEFD
        TKPTTD  IFQ NFI FLHHF  KLSE+F+ERVK EEEEE+RGLRLKK+ K   ++   +    T+NLWF +         ++ R      +  + ++  
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEYRGLRLKKIGKSSCKASHCRIWVQTVNLWFFI------RFELQRRNQEVRCRVFENEEFD

Query:  VYCINFGSVLRKLWVLEV--------RVEIELPVPDTLPTSAESFRSSSSTWLELYIKSVHIVTF-----------QTRFNVSVGSTG
        ++ ++  SVLR    + +        +VEIELP+PDTLPT AESF S+SSTWLELY +SVH+  F              FN+SVG TG
Subjt:  VYCINFGSVLRKLWVLEV--------RVEIELPVPDTLPTSAESFRSSSSTWLELYIKSVHIVTF-----------QTRFNVSVGSTG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-2259.09Show/hide
Query:  ENEEFDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESFRSSSSTWLELYIKSVHIVTF-----------QTRFNVSVGSTGIVRGDDVCWLHAVF
        ++ E D   I   S L  L   +  VEIELPVPDTLPTSAES  S+SSTWLELY +SVH+  F              F+V VGSTGIVRGDDVCWLHAVF
Subjt:  ENEEFDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESFRSSSSTWLELYIKSVHIVTF-----------QTRFNVSVGSTGIVRGDDVCWLHAVF

Query:  RAKLAGGPGG
        RAK  GGPGG
Subjt:  RAKLAGGPGG

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]1.5e-3240.07Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEYRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFF---------------
        +FQPNFISFLHHFP KLSEHFEERVK EEEEE+RGLRLKKIGKSSCKA+HCRIW                      VQ  N   +               
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEYRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFF---------------

Query:  --------------IRFELQRRNQEVRCRVF------------------ENE--------------------EFDVYCINFGSVLRKLWVLEVRVEIELP
                      I   +    + +  R++                  +N+                     + V  +N G   R L  ++  +EIEL 
Subjt:  --------------IRFELQRRNQEVRCRVF------------------ENE--------------------EFDVYCINFGSVLRKLWVLEVRVEIELP

Query:  VPDTLPTSAESFRSSSSTWL----ELYIKSVHIVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        VPDTLPTSAES  S+SSTWL    EL+ K   + T  +R    V S GIVR +DVCWLHAVFRAK+AGG GG
Subjt:  VPDTLPTSAESFRSSSSTWL----ELYIKSVHIVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.4e-2254.17Show/hide
Query:  RNQEVRCRVFENEEFDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESFRSSSSTWLELYIKSVHIVTF-----------QTRFNVSVGSTGIVRG
        R   +  +  E ++  ++ ++  SVLR     +    IELPVPDTLPTSAES  S+SSTWLELY +SVH+  F              FNVSVGSTGIVRG
Subjt:  RNQEVRCRVFENEEFDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESFRSSSSTWLELYIKSVHIVTF-----------QTRFNVSVGSTGIVRG

Query:  DDVCWLHAVFRAKLAGGPGG
        DDVCWLHAVFRAK  GGPGG
Subjt:  DDVCWLHAVFRAKLAGGPGG

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.8e-2259.09Show/hide
Query:  ENEEFDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESFRSSSSTWLELYIKSVHIVTF-----------QTRFNVSVGSTGIVRGDDVCWLHAVF
        ++ E D   I   S L  L   +  VEIELPVPDTLPTSAES  S+SSTWLELY +SVH+  F              F+V VGSTGIVRGDDVCWLHAVF
Subjt:  ENEEFDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESFRSSSSTWLELYIKSVHIVTF-----------QTRFNVSVGSTGIVRGDDVCWLHAVF

Query:  RAKLAGGPGG
        RAK  GGPGG
Subjt:  RAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7UGD0 Uncharacterized protein5.9e-2745.21Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEYRGLRLKKIGKSSCKASHCRIWVQTVNLWFFI------RFELQRRNQEVRCRVFENEEFD
        TKPTTD  IFQ NFI FLHHF  KLSE+F+ERVK EEEEE+RGLRLKK+ K   ++   +    T+NLWF +         ++ R      +  + ++  
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEYRGLRLKKIGKSSCKASHCRIWVQTVNLWFFI------RFELQRRNQEVRCRVFENEEFD

Query:  VYCINFGSVLRKLWVLEV--------RVEIELPVPDTLPTSAESFRSSSSTWLELYIKSVHIVTF-----------QTRFNVSVGSTG
        ++ ++  SVLR    + +        +VEIELP+PDTLPT AESF S+SSTWLELY +SVH+  F              FN+SVG TG
Subjt:  VYCINFGSVLRKLWVLEV--------RVEIELPVPDTLPTSAESFRSSSSTWLELYIKSVHIVTF-----------QTRFNVSVGSTG

A0A5A7V9N3 Reverse transcriptase8.8e-2359.09Show/hide
Query:  ENEEFDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESFRSSSSTWLELYIKSVHIVTF-----------QTRFNVSVGSTGIVRGDDVCWLHAVF
        ++ E D   I   S L  L   +  VEIELPVPDTLPTSAES  S+SSTWLELY +SVH+  F              F+V VGSTGIVRGDDVCWLHAVF
Subjt:  ENEEFDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESFRSSSSTWLELYIKSVHIVTF-----------QTRFNVSVGSTGIVRGDDVCWLHAVF

Query:  RAKLAGGPGG
        RAK  GGPGG
Subjt:  RAKLAGGPGG

A0A5D3CAC6 Uncharacterized protein7.2e-3340.07Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEYRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFF---------------
        +FQPNFISFLHHFP KLSEHFEERVK EEEEE+RGLRLKKIGKSSCKA+HCRIW                      VQ  N   +               
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEYRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFF---------------

Query:  --------------IRFELQRRNQEVRCRVF------------------ENE--------------------EFDVYCINFGSVLRKLWVLEVRVEIELP
                      I   +    + +  R++                  +N+                     + V  +N G   R L  ++  +EIEL 
Subjt:  --------------IRFELQRRNQEVRCRVF------------------ENE--------------------EFDVYCINFGSVLRKLWVLEVRVEIELP

Query:  VPDTLPTSAESFRSSSSTWL----ELYIKSVHIVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        VPDTLPTSAES  S+SSTWL    EL+ K   + T  +R    V S GIVR +DVCWLHAVFRAK+AGG GG
Subjt:  VPDTLPTSAESFRSSSSTWL----ELYIKSVHIVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5D3CJX3 CCHC-type domain-containing protein6.8e-2354.17Show/hide
Query:  RNQEVRCRVFENEEFDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESFRSSSSTWLELYIKSVHIVTF-----------QTRFNVSVGSTGIVRG
        R   +  +  E ++  ++ ++  SVLR     +    IELPVPDTLPTSAES  S+SSTWLELY +SVH+  F              FNVSVGSTGIVRG
Subjt:  RNQEVRCRVFENEEFDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESFRSSSSTWLELYIKSVHIVTF-----------QTRFNVSVGSTGIVRG

Query:  DDVCWLHAVFRAKLAGGPGG
        DDVCWLHAVFRAK  GGPGG
Subjt:  DDVCWLHAVFRAKLAGGPGG

A0A5D3DSY7 Putative Retrotransposon protein8.8e-2359.09Show/hide
Query:  ENEEFDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESFRSSSSTWLELYIKSVHIVTF-----------QTRFNVSVGSTGIVRGDDVCWLHAVF
        ++ E D   I   S L  L   +  VEIELPVPDTLPTSAES  S+SSTWLELY +SVH+  F              F+V VGSTGIVRGDDVCWLHAVF
Subjt:  ENEEFDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESFRSSSSTWLELYIKSVHIVTF-----------QTRFNVSVGSTGIVRGDDVCWLHAVF

Query:  RAKLAGGPGG
        RAK  GGPGG
Subjt:  RAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGAAAAGAAAAAAAAAAAAAAAAAAAGAAAAGAAAGGAAGTGGAAATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATT
TCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATATCGTGGTTTGAGGTTGAAAAAGATAGGAAAAAGTTCAT
GCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACAAAGAAGGAATCAAGAGGTACGTTGTAGAGTGTTCGAAAAT
GAAGAGTTTGATGTGTATTGCATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTATTGGAAGTTAGGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTC
TGCTGAAAGTTTTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTAAGTCCGTTCATATTGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGGGTCAACAGGGA
TCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGAAAAGAAAAAAAAAAAAAAAAAAAGAAAAGAAAGGAAGTGGAAATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATT
TCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATATCGTGGTTTGAGGTTGAAAAAGATAGGAAAAAGTTCAT
GCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACAAAGAAGGAATCAAGAGGTACGTTGTAGAGTGTTCGAAAAT
GAAGAGTTTGATGTGTATTGCATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTATTGGAAGTTAGGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTC
TGCTGAAAGTTTTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTAAGTCCGTTCATATTGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGGGTCAACAGGGA
TCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG
Protein sequenceShow/hide protein sequence
MEGKEKKKKKKKRKEVEMDSTKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEYRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELQRRNQEVRCRVFEN
EEFDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESFRSSSSTWLELYIKSVHIVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG