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Spg011258 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011258
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold8:23918198..23923767
RNA-Seq ExpressionSpg011258
SyntenySpg011258
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]3.2e-1344.7Show/hide
Query:  LCSRHFWTNRLGIAFSVLQNSWAWKDKTTYGSNARFWLFDRPRGNRSSLQTRKLAKT-----------------IEIELPVPNTLPTSTESSSSSSSSTF
        L S  FWTN L I+FS LQ  W  + + +   N      + PRGNR SLQT +L KT                 +EIELPV +TLP S ESS S+S S  
Subjt:  LCSRHFWTNRLGIAFSVLQNSWAWKDKTTYGSNARFWLFDRPRGNRSSLQTRKLAKT-----------------IEIELPVPNTLPTSTESSSSSSSSTF

Query:  QEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGL
               + EDDV WLH +FR K AGGPGGG+
Subjt:  QEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGL

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.6e-1046.53Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------IEIELPVPNTLPTSTESSSSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGPGGG
        PRGNR SLQT +L KT                 +EIELP+P+TLPTS ESS S+SS+  +   E   V        +  DDV WLHA+FR K  GGPGGG
Subjt:  PRGNRSSLQTRKLAKT-----------------IEIELPVPNTLPTSTESSSSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGPGGG

Query:  L
        +
Subjt:  L

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.5e-1045Show/hide
Query:  PRGNRSSLQTRKLAKTIEIELPVPNTLPTSTESSSSSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGGGL
        PRGNR +L T KL KT+EIELPVP+TLPTS ESS S+SS+  +                          EG    +  DD+ WLHA+F  K AG PGGG+
Subjt:  PRGNRSSLQTRKLAKTIEIELPVPNTLPTSTESSSSSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGGGL

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]7.9e-1251.49Show/hide
Query:  SNARFWLFDRPRGNRSSLQTRKLAKT-----------------IEIELPVPNTLPTSTESSSSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGG
        SN + +L  RPRGNR SLQT KL KT                 +EIELPVP+TLPTS ES  S+S ST        +  DDV WLHA+FR K AGGPGGG
Subjt:  SNARFWLFDRPRGNRSSLQTRKLAKT-----------------IEIELPVPNTLPTSTESSSSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGG

Query:  L
        +
Subjt:  L

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]2.5e-1339.24Show/hide
Query:  LCSRHFWTNRLGIAFSVLQNSWAWKDKTTYGSNARFWLFDRPRGNRSSLQTRKLAKT-----------------IEIELPVPNTLPTSTESSSSSSSSTF
        LCS  FWTN L I+FS LQ     + + +   N      + PRGNRSSLQT +L KT                 +EIELPVP+TLPTS ES  S+SS+  
Subjt:  LCSRHFWTNRLGIAFSVLQNSWAWKDKTTYGSNARFWLFDRPRGNRSSLQTRKLAKT-----------------IEIELPVPNTLPTSTESSSSSSSSTF

Query:  Q--------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGGGL
        +                          EG    +  DDV WLH +FR K+AGGPGGG+
Subjt:  Q--------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGGGL

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase4.7e-1046.53Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------IEIELPVPNTLPTSTESSSSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGPGGG
        PRGNR SLQT +L KT                 +EIELP+P+TLPTS ESS S+SS+  +   E   V        +  DDV WLHA+FR K  GGPGGG
Subjt:  PRGNRSSLQTRKLAKT-----------------IEIELPVPNTLPTSTESSSSSSSSTFQ---EGQRVS-------LEEDDVRWLHAIFRTKLAGGPGGG

Query:  L
        +
Subjt:  L

A0A5A7UAH6 CCHC-type domain-containing protein1.2e-1045Show/hide
Query:  PRGNRSSLQTRKLAKTIEIELPVPNTLPTSTESSSSSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGGGL
        PRGNR +L T KL KT+EIELPVP+TLPTS ESS S+SS+  +                          EG    +  DD+ WLHA+F  K AG PGGG+
Subjt:  PRGNRSSLQTRKLAKTIEIELPVPNTLPTSTESSSSSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGGGL

A0A5A7VIY9 Uncharacterized protein1.2e-1339.24Show/hide
Query:  LCSRHFWTNRLGIAFSVLQNSWAWKDKTTYGSNARFWLFDRPRGNRSSLQTRKLAKT-----------------IEIELPVPNTLPTSTESSSSSSSSTF
        LCS  FWTN L I+FS LQ     + + +   N      + PRGNRSSLQT +L KT                 +EIELPVP+TLPTS ES  S+SS+  
Subjt:  LCSRHFWTNRLGIAFSVLQNSWAWKDKTTYGSNARFWLFDRPRGNRSSLQTRKLAKT-----------------IEIELPVPNTLPTSTESSSSSSSSTF

Query:  Q--------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGGGL
        +                          EG    +  DDV WLH +FR K+AGGPGGG+
Subjt:  Q--------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGGGL

A0A5D3BAD1 Retrotrans_gag domain-containing protein3.8e-1251.49Show/hide
Query:  SNARFWLFDRPRGNRSSLQTRKLAKT-----------------IEIELPVPNTLPTSTESSSSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGG
        SN + +L  RPRGNR SLQT KL KT                 +EIELPVP+TLPTS ES  S+S ST        +  DDV WLHA+FR K AGGPGGG
Subjt:  SNARFWLFDRPRGNRSSLQTRKLAKT-----------------IEIELPVPNTLPTSTESSSSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGG

Query:  L
        +
Subjt:  L

A0A5D3BSA6 Retrotrans_gag domain-containing protein1.5e-1344.7Show/hide
Query:  LCSRHFWTNRLGIAFSVLQNSWAWKDKTTYGSNARFWLFDRPRGNRSSLQTRKLAKT-----------------IEIELPVPNTLPTSTESSSSSSSSTF
        L S  FWTN L I+FS LQ  W  + + +   N      + PRGNR SLQT +L KT                 +EIELPV +TLP S ESS S+S S  
Subjt:  LCSRHFWTNRLGIAFSVLQNSWAWKDKTTYGSNARFWLFDRPRGNRSSLQTRKLAKT-----------------IEIELPVPNTLPTSTESSSSSSSSTF

Query:  QEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGL
               + EDDV WLH +FR K AGGPGGG+
Subjt:  QEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTTTCTGTGTTCGAGGCATTTCTGGACAAATCGGTTGGGAATCGCGTTTTCCGTTCTTCAGAATTCATGGGCATGGAAAGACAAAACTACTTATGGTTCTAATGC
TCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACAATAGAGATCGAGCTCCCGGTGCCTAATACACTACCAACGT
CTACTGAAAGTTCCAGTTCAAGCTCCAGTTCAACGTTTCAGGAGGGTCAACGGGTATCATTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCGGACTAAGCTA
GCAGGTGGTCCGGGAGGGGGCCTTCACGCTTATGGCTTTTGCATCCCAAGAGTTCTCTTTGAAATTTCCCTAAAAATCAAGAAGAAGGTTGCCATTGCCTTGGCCTCAAG
ATCCCTAGAGAATACCAGTGTTTCCCTGTGTTTGGCTAAAACCGGAAGAACAGGTCGCAGATTGGCCATATTTTGCCTCCAGACGCAACAACGTGTCAATACTGGTTCAC
AACGTGTCGACGGTGTGTTAAATCCCAACAGCGCACGGGAACGTGACAGCGTCTCGACGCTGTGTCGAGTTCCAACGGCGCCAGCTAGGGTTTCAAGTGGTGCAGTTCGT
GATATAGGCGATTCAGTTCAGTTGGTTTTGGATGGTTTAGCTTCGGTTCATGATGGGTTGGCCTGGTTCGAGGTTTTGGAGGCCGGTTCAAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTTTTCTGTGTTCGAGGCATTTCTGGACAAATCGGTTGGGAATCGCGTTTTCCGTTCTTCAGAATTCATGGGCATGGAAAGACAAAACTACTTATGGTTCTAATGC
TCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACAATAGAGATCGAGCTCCCGGTGCCTAATACACTACCAACGT
CTACTGAAAGTTCCAGTTCAAGCTCCAGTTCAACGTTTCAGGAGGGTCAACGGGTATCATTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCGGACTAAGCTA
GCAGGTGGTCCGGGAGGGGGCCTTCACGCTTATGGCTTTTGCATCCCAAGAGTTCTCTTTGAAATTTCCCTAAAAATCAAGAAGAAGGTTGCCATTGCCTTGGCCTCAAG
ATCCCTAGAGAATACCAGTGTTTCCCTGTGTTTGGCTAAAACCGGAAGAACAGGTCGCAGATTGGCCATATTTTGCCTCCAGACGCAACAACGTGTCAATACTGGTTCAC
AACGTGTCGACGGTGTGTTAAATCCCAACAGCGCACGGGAACGTGACAGCGTCTCGACGCTGTGTCGAGTTCCAACGGCGCCAGCTAGGGTTTCAAGTGGTGCAGTTCGT
GATATAGGCGATTCAGTTCAGTTGGTTTTGGATGGTTTAGCTTCGGTTCATGATGGGTTGGCCTGGTTCGAGGTTTTGGAGGCCGGTTCAAGCTGA
Protein sequenceShow/hide protein sequence
MCFLCSRHFWTNRLGIAFSVLQNSWAWKDKTTYGSNARFWLFDRPRGNRSSLQTRKLAKTIEIELPVPNTLPTSTESSSSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKL
AGGPGGGLHAYGFCIPRVLFEISLKIKKKVAIALASRSLENTSVSLCLAKTGRTGRRLAIFCLQTQQRVNTGSQRVDGVLNPNSARERDSVSTLCRVPTAPARVSSGAVR
DIGDSVQLVLDGLASVHDGLAWFEVLEAGSS