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Spg011259 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011259
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold8:23975692..23981499
RNA-Seq ExpressionSpg011259
SyntenySpg011259
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025361.1 uncharacterized protein E6C27_scaffold1204G00450 [Cucumis melo var. makuwa]2.5e-2769.72Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLASGPGGDSIYNSTHVLELD
        PL TLSVLRDNDAVVEIELPV DTL   AES  S+SSYF NQVMSGLH V    FNVSVGST IVRGDDVCWLHAVFRAK A GPGG+S + +T+     
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLASGPGGDSIYNSTHVLELD

Query:  LELSADVGS
         E   D GS
Subjt:  LELSADVGS

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]7.1e-3056.77Show/hide
Query:  VYKSNQKLYLEEDKGVTEKLESVLSDFGAFLDKLVGNLVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS-----------
        V+KSNQKLYL+ + G + K + +L           GN   + SG +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SS           
Subjt:  VYKSNQKLYLEEDKGVTEKLESVLSDFGAFLDKLVGNLVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS-----------

Query:  -----YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLASGPGG
             YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK   GPGG
Subjt:  -----YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLASGPGG

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.8e-2963.43Show/hide
Query:  VYKSNQKLYLEEDKGVTEKLESVLSDF-GAFLDKLVGNLVFISSGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVE
        V KSNQKLYL+ + G + K            LDK V           PL T SVL DNDAVVEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V   
Subjt:  VYKSNQKLYLEEDKGVTEKLESVLSDF-GAFLDKLVGNLVFISSGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVE

Query:  RFNVSVGSTGIVRGDDVCWLHAVFRAKLASGPGG
         FNVSVGSTGIVRGDDVC LH VFRAK A GPGG
Subjt:  RFNVSVGSTGIVRGDDVCWLHAVFRAKLASGPGG

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]1.1e-2781.4Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLASGPGG
        L TLSVLRDNDAVVEIELPVPDTLPTS ESS S+SSYF NQVMSGLH V    FN+SV STGIVRGDDVCWLHAVFRAK   GP G
Subjt:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLASGPGG

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]7.1e-3056.77Show/hide
Query:  VYKSNQKLYLEEDKGVTEKLESVLSDFGAFLDKLVGNLVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS-----------
        V+KSNQKLYL+ + G + K + +L           GN   + SG +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SS           
Subjt:  VYKSNQKLYLEEDKGVTEKLESVLSDFGAFLDKLVGNLVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS-----------

Query:  -----YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLASGPGG
             YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK   GPGG
Subjt:  -----YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLASGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7V9N3 Reverse transcriptase3.4e-3056.77Show/hide
Query:  VYKSNQKLYLEEDKGVTEKLESVLSDFGAFLDKLVGNLVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS-----------
        V+KSNQKLYL+ + G + K + +L           GN   + SG +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SS           
Subjt:  VYKSNQKLYLEEDKGVTEKLESVLSDFGAFLDKLVGNLVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS-----------

Query:  -----YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLASGPGG
             YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK   GPGG
Subjt:  -----YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLASGPGG

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein3.8e-2963.43Show/hide
Query:  VYKSNQKLYLEEDKGVTEKLESVLSDF-GAFLDKLVGNLVFISSGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVE
        V KSNQKLYL+ + G + K            LDK V           PL T SVL DNDAVVEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V   
Subjt:  VYKSNQKLYLEEDKGVTEKLESVLSDF-GAFLDKLVGNLVFISSGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVE

Query:  RFNVSVGSTGIVRGDDVCWLHAVFRAKLASGPGG
         FNVSVGSTGIVRGDDVC LH VFRAK A GPGG
Subjt:  RFNVSVGSTGIVRGDDVCWLHAVFRAKLASGPGG

A0A5D3BMJ4 Retrotrans_gag domain-containing protein5.5e-2881.4Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLASGPGG
        L TLSVLRDNDAVVEIELPVPDTLPTS ESS S+SSYF NQVMSGLH V    FN+SV STGIVRGDDVCWLHAVFRAK   GP G
Subjt:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLASGPGG

A0A5D3DIE3 Retrotrans_gag domain-containing protein1.2e-2769.72Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLASGPGGDSIYNSTHVLELD
        PL TLSVLRDNDAVVEIELPV DTL   AES  S+SSYF NQVMSGLH V    FNVSVGST IVRGDDVCWLHAVFRAK A GPGG+S + +T+     
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLASGPGGDSIYNSTHVLELD

Query:  LELSADVGS
         E   D GS
Subjt:  LELSADVGS

A0A5D3DSY7 Putative Retrotransposon protein3.4e-3056.77Show/hide
Query:  VYKSNQKLYLEEDKGVTEKLESVLSDFGAFLDKLVGNLVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS-----------
        V+KSNQKLYL+ + G + K + +L           GN   + SG +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SS           
Subjt:  VYKSNQKLYLEEDKGVTEKLESVLSDFGAFLDKLVGNLVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS-----------

Query:  -----YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLASGPGG
             YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK   GPGG
Subjt:  -----YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLASGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCTTCCGCTGCGCCATGGCTTTCATCCCTTCAATCGGCATCAGAGCCTTCGCTGGTCCGGTGTTTCAGCGTCGGGACGCTGTTCACAAAGCGGCTCGACGCTGTCC
TGATTCCGCTGGCGCTGAGATCAGATTAACCCGTAGCGTCAGGTTGCTGCGTTGCAAGCGTCTCGACGCTGTCACGATGGCGGTGCAAATTAAGGCTTCAAGAAGGCGCG
GTTCAGCAGTTGGGGCGGTCCGATTCGTTCGTTTGAGCTACACAGAAGGAATCAAGAGGATTTTCGAGCAAACCAGGAGGATCTCTAGTGTTCTCTGGTGTTTTGAGCAT
TCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGAGGAAGATAAAGGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGATTTCGGGGCATTTCTGGACAAATTGGT
TGGGAATCTCGTTTTCATTTCTTCAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGC
CAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACGTTTCAGTAGGGTCAACA
GGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAAGTGGTCCGGGAGGGGACTCAATATACAACTCCACCCATGTACTGGAGCT
TGATCTGGAGCTTTCAGCAGACGTTGGCAGTGTATCAGGCACCGGGAGCTCGATCTCTACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGCTTCCGCTGCGCCATGGCTTTCATCCCTTCAATCGGCATCAGAGCCTTCGCTGGTCCGGTGTTTCAGCGTCGGGACGCTGTTCACAAAGCGGCTCGACGCTGTCC
TGATTCCGCTGGCGCTGAGATCAGATTAACCCGTAGCGTCAGGTTGCTGCGTTGCAAGCGTCTCGACGCTGTCACGATGGCGGTGCAAATTAAGGCTTCAAGAAGGCGCG
GTTCAGCAGTTGGGGCGGTCCGATTCGTTCGTTTGAGCTACACAGAAGGAATCAAGAGGATTTTCGAGCAAACCAGGAGGATCTCTAGTGTTCTCTGGTGTTTTGAGCAT
TCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGAGGAAGATAAAGGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGATTTCGGGGCATTTCTGGACAAATTGGT
TGGGAATCTCGTTTTCATTTCTTCAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGC
CAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACGTTTCAGTAGGGTCAACA
GGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAAGTGGTCCGGGAGGGGACTCAATATACAACTCCACCCATGTACTGGAGCT
TGATCTGGAGCTTTCAGCAGACGTTGGCAGTGTATCAGGCACCGGGAGCTCGATCTCTACCTGA
Protein sequenceShow/hide protein sequence
MRFRCAMAFIPSIGIRAFAGPVFQRRDAVHKAARRCPDSAGAEIRLTRSVRLLRCKRLDAVTMAVQIKASRRRGSAVGAVRFVRLSYTEGIKRIFEQTRRISSVLWCFEH
SGVYKSNQKLYLEEDKGVTEKLESVLSDFGAFLDKLVGNLVFISSGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGST
GIVRGDDVCWLHAVFRAKLASGPGGDSIYNSTHVLELDLELSADVGSVSGTGSSIST