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Spg011270 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011270
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold8:23668615..23672350
RNA-Seq ExpressionSpg011270
SyntenySpg011270
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.4e-1941.61Show/hide
Query:  KPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSVESSRTSSSTWVELYIEFVHIVNVFVQEGQQVS---------------LEED
        +PRGNR+SLQT +L KT                 VEIELPVPDTLPTS ESS ++SSTW+EL  EFVH+   +    Q +S               +  D
Subjt:  KPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSVESSRTSSSTWVELYIEFVHIVNVFVQEGQQVS---------------LEED

Query:  NVRWLHAIFRAKLAGGPGGGVTPGIVTASRRYDVTQLVRREMGQRRDAVRIPEQSTRFGLE
        NV WLHA+F AK AGGPGGGV P   +  RR +  ++     GQ       P      G E
Subjt:  NVRWLHAIFRAKLAGGPGGGVTPGIVTASRRYDVTQLVRREMGQRRDAVRIPEQSTRFGLE

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]5.4e-2638.79Show/hide
Query:  IGKAHAKPATAESGFNLSTSGFLFGLSYIEGTKRAQDFRAKQEDLWFSLVFRPFWGVQVESEALFGMVGKLIQFPTTRMKNSSAKNYLKPRGNRSSLQTR
        I K +AKPA AESG N      LFGLSY+E                          ++ ES       G  + F       S A + L PRGNR +L T 
Subjt:  IGKAHAKPATAESGFNLSTSGFLFGLSYIEGTKRAQDFRAKQEDLWFSLVFRPFWGVQVESEALFGMVGKLIQFPTTRMKNSSAKNYLKPRGNRSSLQTR

Query:  KLAKTVEIELPVPDTLPTSVESSRTSSSTWVELYIEFVHIVNVFVQ------------EGQQVSLEEDNVRWLHAIFRAKLAGGPGGGVTPGIVTASRRY
        KL KTVEIELPVPDTLPTS ESS+++SSTW+ELY E VH+  +F +            EG    +  D++ WLHA+F AK AG PGGGV P   +  RR 
Subjt:  KLAKTVEIELPVPDTLPTSVESSRTSSSTWVELYIEFVHIVNVFVQ------------EGQQVSLEEDNVRWLHAIFRAKLAGGPGGGVTPGIVTASRRY

Query:  DVTQLVRREMGQRRDAVRIPEQSTRFGLETWA
        +   +     GQ       P      G E +A
Subjt:  DVTQLVRREMGQRRDAVRIPEQSTRFGLETWA

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]7.6e-2049.61Show/hide
Query:  SSAKNYLKPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSVESSRTSSSTWVELYIEFVHIVNVFVQ------------EGQQVS
        S+ +N   PRGNRSSLQT +L KT                 VEIELPVPDTLPTS ES  ++SSTW+ELY EFVH+  +F +            EG    
Subjt:  SSAKNYLKPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSVESSRTSSSTWVELYIEFVHIVNVFVQ------------EGQQVS

Query:  LEEDNVRWLHAIFRAKLAGGPGGGVTPGI
        +  D+V WLH +FRAK+AGGPGGGVT  I
Subjt:  LEEDNVRWLHAIFRAKLAGGPGGGVTPGI

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]2.6e-2058.93Show/hide
Query:  QVESEALFGMVGKLIQFPTTRMKNSSAKNYLKPRGNRSSLQTRKLAKTVEIELPVPDTLPTSVESSRTSSSTWVELYIEFVHIV--------------NV
        QVESEALFGMV KLIQ+PTT M        + PRGNR S QT KL KTVEIELPVPDTLPTS ESS ++SSTW+ELY E VH+                +
Subjt:  QVESEALFGMVGKLIQFPTTRMKNSSAKNYLKPRGNRSSLQTRKLAKTVEIELPVPDTLPTSVESSRTSSSTWVELYIEFVHIV--------------NV

Query:  FVQEGQQVSLEE
        +V +GQQ SLEE
Subjt:  FVQEGQQVSLEE

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.9e-1842.78Show/hide
Query:  LFGLSYIEGTKRAQDFRAKQEDLWFSLVFRPFWGVQVESEALFGMVGKLIQFPTTRMKNSSAKNYLKPRGNRSSLQTRKLAKTV---------------E
        LF LSY EGTK +  F +K              G  V S+AL              +   + K YL PRGNR SLQT +L KTV                
Subjt:  LFGLSYIEGTKRAQDFRAKQEDLWFSLVFRPFWGVQVESEALFGMVGKLIQFPTTRMKNSSAKNYLKPRGNRSSLQTRKLAKTV---------------E

Query:  IELPVPDTLPTSVESSRTSSSTWVELYIEFVHIVNVFVQEGQQVSLE----------------EDNVRWLHAIFRAKLAGGPGGGVT
        IELPVPDTLPTS ESS ++SSTW+ELY E VH V +F     QV  E                 D+V WLHA+FRAK  GGPGGGVT
Subjt:  IELPVPDTLPTSVESSRTSSSTWVELYIEFVHIVNVFVQEGQQVSLE----------------EDNVRWLHAIFRAKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein3.1e-1941.61Show/hide
Query:  KPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSVESSRTSSSTWVELYIEFVHIVNVFVQEGQQVS---------------LEED
        +PRGNR+SLQT +L KT                 VEIELPVPDTLPTS ESS ++SSTW+EL  EFVH+   +    Q +S               +  D
Subjt:  KPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSVESSRTSSSTWVELYIEFVHIVNVFVQEGQQVS---------------LEED

Query:  NVRWLHAIFRAKLAGGPGGGVTPGIVTASRRYDVTQLVRREMGQRRDAVRIPEQSTRFGLE
        NV WLHA+F AK AGGPGGGV P   +  RR +  ++     GQ       P      G E
Subjt:  NVRWLHAIFRAKLAGGPGGGVTPGIVTASRRYDVTQLVRREMGQRRDAVRIPEQSTRFGLE

A0A5A7UAH6 CCHC-type domain-containing protein2.6e-2638.79Show/hide
Query:  IGKAHAKPATAESGFNLSTSGFLFGLSYIEGTKRAQDFRAKQEDLWFSLVFRPFWGVQVESEALFGMVGKLIQFPTTRMKNSSAKNYLKPRGNRSSLQTR
        I K +AKPA AESG N      LFGLSY+E                          ++ ES       G  + F       S A + L PRGNR +L T 
Subjt:  IGKAHAKPATAESGFNLSTSGFLFGLSYIEGTKRAQDFRAKQEDLWFSLVFRPFWGVQVESEALFGMVGKLIQFPTTRMKNSSAKNYLKPRGNRSSLQTR

Query:  KLAKTVEIELPVPDTLPTSVESSRTSSSTWVELYIEFVHIVNVFVQ------------EGQQVSLEEDNVRWLHAIFRAKLAGGPGGGVTPGIVTASRRY
        KL KTVEIELPVPDTLPTS ESS+++SSTW+ELY E VH+  +F +            EG    +  D++ WLHA+F AK AG PGGGV P   +  RR 
Subjt:  KLAKTVEIELPVPDTLPTSVESSRTSSSTWVELYIEFVHIVNVFVQ------------EGQQVSLEEDNVRWLHAIFRAKLAGGPGGGVTPGIVTASRRY

Query:  DVTQLVRREMGQRRDAVRIPEQSTRFGLETWA
        +   +     GQ       P      G E +A
Subjt:  DVTQLVRREMGQRRDAVRIPEQSTRFGLETWA

A0A5A7VIY9 Uncharacterized protein3.7e-2049.61Show/hide
Query:  SSAKNYLKPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSVESSRTSSSTWVELYIEFVHIVNVFVQ------------EGQQVS
        S+ +N   PRGNRSSLQT +L KT                 VEIELPVPDTLPTS ES  ++SSTW+ELY EFVH+  +F +            EG    
Subjt:  SSAKNYLKPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLPTSVESSRTSSSTWVELYIEFVHIVNVFVQ------------EGQQVS

Query:  LEEDNVRWLHAIFRAKLAGGPGGGVTPGI
        +  D+V WLH +FRAK+AGGPGGGVT  I
Subjt:  LEEDNVRWLHAIFRAKLAGGPGGGVTPGI

A0A5D3BET3 Uncharacterized protein1.3e-2058.93Show/hide
Query:  QVESEALFGMVGKLIQFPTTRMKNSSAKNYLKPRGNRSSLQTRKLAKTVEIELPVPDTLPTSVESSRTSSSTWVELYIEFVHIV--------------NV
        QVESEALFGMV KLIQ+PTT M        + PRGNR S QT KL KTVEIELPVPDTLPTS ESS ++SSTW+ELY E VH+                +
Subjt:  QVESEALFGMVGKLIQFPTTRMKNSSAKNYLKPRGNRSSLQTRKLAKTVEIELPVPDTLPTSVESSRTSSSTWVELYIEFVHIV--------------NV

Query:  FVQEGQQVSLEE
        +V +GQQ SLEE
Subjt:  FVQEGQQVSLEE

A0A5D3CJX3 CCHC-type domain-containing protein9.1e-1942.78Show/hide
Query:  LFGLSYIEGTKRAQDFRAKQEDLWFSLVFRPFWGVQVESEALFGMVGKLIQFPTTRMKNSSAKNYLKPRGNRSSLQTRKLAKTV---------------E
        LF LSY EGTK +  F +K              G  V S+AL              +   + K YL PRGNR SLQT +L KTV                
Subjt:  LFGLSYIEGTKRAQDFRAKQEDLWFSLVFRPFWGVQVESEALFGMVGKLIQFPTTRMKNSSAKNYLKPRGNRSSLQTRKLAKTV---------------E

Query:  IELPVPDTLPTSVESSRTSSSTWVELYIEFVHIVNVFVQEGQQVSLE----------------EDNVRWLHAIFRAKLAGGPGGGVT
        IELPVPDTLPTS ESS ++SSTW+ELY E VH V +F     QV  E                 D+V WLHA+FRAK  GGPGGGVT
Subjt:  IELPVPDTLPTSVESSRTSSSTWVELYIEFVHIVNVFVQEGQQVSLE----------------EDNVRWLHAIFRAKLAGGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAATTCCCTTGAGTAGATCCGTAGTTGATGGTCTTCTTGAAGTCTCCAATCTTTCCTTCTCTATTCGGCTCCCTATTGCCAACCGCAAGTGCACGGGCCGCAAGAA
GAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCTACAGCAGAATCTGGGTTCAACCTGTCAACCTCTGGTTTTTTAT
TCGGTTTGAGCTACATAGAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGACCATTCTGGGGTGTACAAGTTGAA
TCAGAAGCTCTCTTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACTCGCATGAAGAATTCGTCAGCCAAAAATTACTTGAAGCCAAGAGGAAATAGGTCGAGTCT
ACAGACCAGGAAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGT
ATATTGAGTTTGTTCATATTGTAAATGTTTTCGTTCAGGAGGGTCAGCAGGTATCGTTAGAGGAGGACAATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCA
GGTGGTCCAGGAGGGGGTGTGACACCCGGAATAGTGACAGCGTCGCGACGCTATGACGTCACCCAACTTGTCCGCCGAGAAATGGGACAGCGTCGCGACGCTGTGCGGAT
TCCAGAACAGTCCACGCGGTTTGGGCTTGAAACTTGGGCCAACTTCAATTCTTTTTGGATCTTCTCTTGGATAGTTGACTATTGGGCTCTCCCTTTGACCCATGCTTGGA
TATTTGGCTTGGAATGCTCATTTTTGGGCCTTTTCCCACCAAAAATCCACAAAGTGCTCCTTAGGACAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTAATTCCCTTGAGTAGATCCGTAGTTGATGGTCTTCTTGAAGTCTCCAATCTTTCCTTCTCTATTCGGCTCCCTATTGCCAACCGCAAGTGCACGGGCCGCAAGAA
GAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCTACAGCAGAATCTGGGTTCAACCTGTCAACCTCTGGTTTTTTAT
TCGGTTTGAGCTACATAGAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGACCATTCTGGGGTGTACAAGTTGAA
TCAGAAGCTCTCTTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACTCGCATGAAGAATTCGTCAGCCAAAAATTACTTGAAGCCAAGAGGAAATAGGTCGAGTCT
ACAGACCAGGAAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGT
ATATTGAGTTTGTTCATATTGTAAATGTTTTCGTTCAGGAGGGTCAGCAGGTATCGTTAGAGGAGGACAATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCA
GGTGGTCCAGGAGGGGGTGTGACACCCGGAATAGTGACAGCGTCGCGACGCTATGACGTCACCCAACTTGTCCGCCGAGAAATGGGACAGCGTCGCGACGCTGTGCGGAT
TCCAGAACAGTCCACGCGGTTTGGGCTTGAAACTTGGGCCAACTTCAATTCTTTTTGGATCTTCTCTTGGATAGTTGACTATTGGGCTCTCCCTTTGACCCATGCTTGGA
TATTTGGCTTGGAATGCTCATTTTTGGGCCTTTTCCCACCAAAAATCCACAAAGTGCTCCTTAGGACAAAATAA
Protein sequenceShow/hide protein sequence
MLIPLSRSVVDGLLEVSNLSFSIRLPIANRKCTGRKKKKKKNFVVLRLKKIGKAHAKPATAESGFNLSTSGFLFGLSYIEGTKRAQDFRAKQEDLWFSLVFRPFWGVQVE
SEALFGMVGKLIQFPTTRMKNSSAKNYLKPRGNRSSLQTRKLAKTVEIELPVPDTLPTSVESSRTSSSTWVELYIEFVHIVNVFVQEGQQVSLEEDNVRWLHAIFRAKLA
GGPGGGVTPGIVTASRRYDVTQLVRREMGQRRDAVRIPEQSTRFGLETWANFNSFWIFSWIVDYWALPLTHAWIFGLECSFLGLFPPKIHKVLLRTK