CuGenDBv2

Gene ID	Spg011271
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	E3 ubiquitin protein ligase
Genome location	scaffold8:24030139..24044627
RNA-Seq Expression	Spg011271
Synteny	Spg011271
Gene Ontology terms	GO:0006325 - chromatin organization (biological process) GO:0010390 - histone monoubiquitination (biological process) GO:0005634 - nucleus (cellular component) GO:0004842 - ubiquitin-protein transferase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7010233.1 E3 ubiquitin-protein ligase BRE1-like 2 [Cucurbita argyrosperma subsp. argyrosperma]

5.0e-15

86.79

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Query:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGKR
        EDIKGEFHVMASALSKEMGMMESQLKRWKET HEA+ VREKVQA ETLL+ K+
Subjt:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGKR

XP_022943633.1 E3 ubiquitin-protein ligase BRE1-like 2 isoform X2 [Cucurbita moschata]

5.0e-15

86.79

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Query:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGKR
        EDIKGEFHVMASALSKEMGMMESQLKRWKET HEA+ VREKVQA ETLL+ K+
Subjt:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGKR

XP_023513143.1 E3 ubiquitin-protein ligase BRE1-like 2 isoform X2 [Cucurbita pepo subsp. pepo]

5.0e-15

86.79

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Query:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGKR
        EDIKGEFHVMASALSKEMGMMESQLKRWKET HEA+ VREKVQA ETLL+ K+
Subjt:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGKR

XP_023513144.1 E3 ubiquitin-protein ligase BRE1-like 2 isoform X3 [Cucurbita pepo subsp. pepo]

5.0e-15

86.79

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Query:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGKR
        EDIKGEFHVMASALSKEMGMMESQLKRWKET HEA+ VREKVQA ETLL+ K+
Subjt:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGKR

XP_023513145.1 E3 ubiquitin-protein ligase BRE1-like 2 isoform X4 [Cucurbita pepo subsp. pepo]

5.0e-15

86.79

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Query:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGKR
        EDIKGEFHVMASALSKEMGMMESQLKRWKET HEA+ VREKVQA ETLL+ K+
Subjt:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGKR

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DHV2 E3 ubiquitin protein ligase

1.6e-14

83.33

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Query:  AIEDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGK
        A EDIK EFHVMASALSKEMGMME+Q+KRWKETAHEA+ +REKVQA ETLL GK
Subjt:  AIEDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGK

A0A6J1DII2 E3 ubiquitin protein ligase

1.6e-14

83.33

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Query:  AIEDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGK
        A EDIK EFHVMASALSKEMGMME+Q+KRWKETAHEA+ +REKVQA ETLL GK
Subjt:  AIEDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGK

A0A6J1DLS7 E3 ubiquitin protein ligase

1.6e-14

83.33

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Query:  AIEDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGK
        A EDIK EFHVMASALSKEMGMME+Q+KRWKETAHEA+ +REKVQA ETLL GK
Subjt:  AIEDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGK

A0A6J1FTK1 E3 ubiquitin protein ligase

2.4e-15

86.79

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Query:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGKR
        EDIKGEFHVMASALSKEMGMMESQLKRWKET HEA+ VREKVQA ETLL+ K+
Subjt:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGKR

A0A6J1FX78 E3 ubiquitin protein ligase

2.4e-15

86.79

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Query:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGKR
        EDIKGEFHVMASALSKEMGMMESQLKRWKET HEA+ VREKVQA ETLL+ K+
Subjt:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGKR

SwissProt top hits

e value

%identity

Alignment

A2ZAC2 E3 ubiquitin-protein ligase BRE1-like 2

1.1e-04

46.15

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Query:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGK
        +D K E HVMA++LSKEM ++++Q+ R K+ A EA+ +RE+     TLL  K
Subjt:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGK

Q336R3 E3 ubiquitin-protein ligase BRE1-like 2

1.1e-04

46.15

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Query:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGK
        +D K E HVMA++LSKEM ++++Q+ R K+ A EA+ +RE+     TLL  K
Subjt:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGK

Q9C895 E3 ubiquitin-protein ligase BRE1-like 2

1.2e-08

57.69

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Query:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGK
        +DIK EF  MAS LSKEM MME+QLKRWK+TA +A+++RE+ Q+    L  K
Subjt:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGK

Arabidopsis top hits

e value

%identity

Alignment

AT1G55250.1 histone mono-ubiquitination 2

8.8e-10

57.69

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Query:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGK
        +DIK EF  MAS LSKEM MME+QLKRWK+TA +A+++RE+ Q+    L  K
Subjt:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQARETLLVGK

AT1G55250.3 histone mono-ubiquitination 2

2.5e-09

63.64

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Query:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQA
        +DIK EF  MAS LSKEM MME+QLKRWK+TA +A+++RE+ Q+
Subjt:  EDIKGEFHVMASALSKEMGMMESQLKRWKETAHEAIFVREKVQA

Sequences

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CDS sequence

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ATGTCAGGAGCCAATCATGCTAAATTGGTGTTAATTCGGGCCAATTATGGAGTTTTGGAGCCATCTTGGTGTCTTGGACGGCGAGGAGCCACTGGGTTGATGCAAGACAA
TCTCTACGGAGTGACGACCCTTGATAGGCCTAGGATGCATGTTAAAGAATTCACGGTTAACGGGGTAATTAAACACAGAAGGGAGGAGAATAAGTCCAAATCTATTAAAT
TTCGAAACTCTACAAATCAATCCCAATGGCCCCGAAGAACCAGAGACCCCAATCGAAATACGGATTTGAAGACTGGCGGTGATGGCCTGCAACCTCGACGAAGAGGGGCT
TATCGGAGAGCTCTGCAACGGTTTCAATTTGCTGATGGACAGAGAGAAATGAGTGATAAATTTCGAGAGCTGGAAGAGGGATGTGACGACGCTAGGGCTCAACCGCTAGG
GGATCTCACCGATGACGAGTTTAGAGGGATGTTGAGGGAAGGGGATTCCGACGACGTGTTGATACTGGCAGCTGGTCGTCTTTTTGAGCTTCAAGATGCCTGTGAAGATA
ATGTAACCTTGTCAAATCAATTCCAAGATATTGAGGTGTTTCCTTTCATAGCAATAGAGGATATCAAAGGAGAATTTCATGTTATGGCGTCAGCTTTGTCTAAAGAAATG
GGGATGATGGAATCTCAGCTAAAACGTTGGAAGGAGACAGCTCATGAAGCAATTTTTGTACGTGAGAAAGTGCAGGCACGCGAGACTTTATTAGTTGGGAAGAGAATTGG
ATATGCAGGTAGGGGTTTGGAATTTGGCATTGATAAATTTGTTAATGTTGGTGTTGTGTTTGCTGATCTTGAGTGCTTAGCACAGGATTTTCGTGCAAACCAGAAAGATC
TCTGGTTTTCTCTGGTTGTTCGAGCATTCTGGTTGTACAAGTTGCATCAGAAGCTCTATTTGGTATGGCACAGAGGAAATAGGTCGAGTCTACAGACCAAAAAACTAGCT
AAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGCGTCGAGACGCCAAGGGCAGCGT
CTCCATGCCACGGACTTTAGTCTCCATGTCAATTTCTCGTCGGCGTCGAGACGCCAGAGGCAGCGTCTCCACGCCACGGACTTTAGTCATTGTGTCAATTTCGCGTCAGC
GTCGAGACGCCAGGGGTGGCGTCTCAACTTCGTCCCTAATCCGAGCATGCTACTTTTCTTCTCGGCCTTGTCTCGCTTCATCTCAGTACGGGGCTCCAATCTTCGGCTCT
TGGTGTCGTTCTTCAGTCCCGCTTCAATTCAATGGGTTTTTTCACCTCCTCGTCGTCCAAGACACCGAGATGGCTCCAAAACTCCATAATTGGCCCGAATTAACACCAAT
TTAG

mRNA sequence

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Protein sequence

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MSGANHAKLVLIRANYGVLEPSWCLGRRGATGLMQDNLYGVTTLDRPRMHVKEFTVNGVIKHRREENKSKSIKFRNSTNQSQWPRRTRDPNRNTDLKTGGDGLQPRRRGA
YRRALQRFQFADGQREMSDKFRELEEGCDDARAQPLGDLTDDEFRGMLREGDSDDVLILAAGRLFELQDACEDNVTLSNQFQDIEVFPFIAIEDIKGEFHVMASALSKEM
GMMESQLKRWKETAHEAIFVREKVQARETLLVGKRIGYAGRGLEFGIDKFVNVGVVFADLECLAQDFRANQKDLWFSLVVRAFWLYKLHQKLYLVWHRGNRSSLQTKKLA
KTVEIELPVPDTLPTSAESSRSSSSTWVERRDAKGSVSMPRTLVSMSISRRRRDARGSVSTPRTLVIVSISRQRRDARGGVSTSSLIRACYFSSRPCLASSQYGAPIFGS
WCRSSVPLQFNGFFHLLVVQDTEMAPKLHNWPELTPI

Spg011271 (gene) of Sponge gourd (cylindrica) v1 genome