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Spg011274 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011274
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold8:23847311..23850926
RNA-Seq ExpressionSpg011274
SyntenySpg011274
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041121.1 hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa]5.6e-1161.84Show/hide
Query:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLLTSAESSRTSS
        PRGNR SLQT +L  TISIDYMTEILS RLYGTVCT                  VEIELPVPD L TSAESS ++S
Subjt:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLLTSAESSRTSS

KAA0052217.1 hypothetical protein E6C27_scaffold207G00280 [Cucumis melo var. makuwa]2.5e-1160.26Show/hide
Query:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLLTSAESSRTSSRA
        PRGNR +LQT +L KT+SIDY+TEILS RLYGTVCTQ                 VEIEL VPDTL TSAESS + SR+
Subjt:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLLTSAESSRTSSRA

TYK01784.1 hypothetical protein E5676_scaffold113G00120 [Cucumis melo var. makuwa]2.5e-1160.26Show/hide
Query:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLLTSAESSRTSSRA
        PRGNR +LQT +L KT+SIDY+TEILS RLYGTVCTQ                 VEIEL VPDTL TSAESS + SR+
Subjt:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLLTSAESSRTSSRA

TYK21916.1 hypothetical protein E5676_scaffold494G00570 [Cucumis melo var. makuwa]8.6e-1263.16Show/hide
Query:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLLTSAESSRTSS
        PRGNRSSLQT +L  TISIDYMTEILS RLYGTVCT                  VEIELPVPD L TSAESS ++S
Subjt:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLLTSAESSRTSS

TYK27997.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.8e-0953.66Show/hide
Query:  RFHFFRPRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLLTSAESSRTSS
        + +   PR NR SLQT +L KT+SIDYMTEILS R YGTVCTQ                 VEIELPVPDTL +S ES  ++S
Subjt:  RFHFFRPRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLLTSAESSRTSS

TrEMBL top hitse value%identityAlignment
A0A5A7THH5 Uncharacterized protein2.7e-1161.84Show/hide
Query:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLLTSAESSRTSS
        PRGNR SLQT +L  TISIDYMTEILS RLYGTVCT                  VEIELPVPD L TSAESS ++S
Subjt:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLLTSAESSRTSS

A0A5A7UCL6 Reverse transcriptase domain-containing protein1.2e-1160.26Show/hide
Query:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLLTSAESSRTSSRA
        PRGNR +LQT +L KT+SIDY+TEILS RLYGTVCTQ                 VEIEL VPDTL TSAESS + SR+
Subjt:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLLTSAESSRTSSRA

A0A5A7VI26 Putative DNA/RNA polymerases superfamily protein8.7e-1053.66Show/hide
Query:  RFHFFRPRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLLTSAESSRTSS
        + +   PR NR SLQT +L KT+SIDYMTEILS R YGTVCTQ                 VEIELPVPDTL +S ES  ++S
Subjt:  RFHFFRPRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLLTSAESSRTSS

A0A5D3BRJ2 Reverse transcriptase domain-containing protein1.2e-1160.26Show/hide
Query:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLLTSAESSRTSSRA
        PRGNR +LQT +L KT+SIDY+TEILS RLYGTVCTQ                 VEIEL VPDTL TSAESS + SR+
Subjt:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLLTSAESSRTSSRA

A0A5D3DE96 Uncharacterized protein4.2e-1263.16Show/hide
Query:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLLTSAESSRTSS
        PRGNRSSLQT +L  TISIDYMTEILS RLYGTVCT                  VEIELPVPD L TSAESS ++S
Subjt:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLLTSAESSRTSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGAGAAAGATAAAGGGTAGCAGAGAAGCTCAAATCTGTGTTGTCTGTGTTCG
GGGCGTTTCTGGGACAATTGGTTGGGAATTTCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTATTTCTATTGACT
ACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCTAACGTCTGCTGAAAGTTCCAGAACA
AGCTCCAGAGCTGGACGGACCTTTCTTGCTGCCCAAGACGCACAGCGTCGAGATGCTGTGACGTCAGGTTTTCTTGGAGCAGAAGTTGTCGCAGCGTTGCGACGCTACGC
GGACAGCGTCGCGACGCTACCGCGATTCTGGAATTTTCTTCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGAGAAAGATAAAGGGTAGCAGAGAAGCTCAAATCTGTGTTGTCTGTGTTCG
GGGCGTTTCTGGGACAATTGGTTGGGAATTTCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTATTTCTATTGACT
ACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCTAACGTCTGCTGAAAGTTCCAGAACA
AGCTCCAGAGCTGGACGGACCTTTCTTGCTGCCCAAGACGCACAGCGTCGAGATGCTGTGACGTCAGGTTTTCTTGGAGCAGAAGTTGTCGCAGCGTTGCGACGCTACGC
GGACAGCGTCGCGACGCTACCGCGATTCTGGAATTTTCTTCACTGA
Protein sequenceShow/hide protein sequence
MVFGMENRAQDFRAKQEDLWRKIKGSREAQICVVCVRGVSGTIGWEFRFHFFRPRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQVEIELPVPDTLLTSAESSRT
SSRAGRTFLAAQDAQRRDAVTSGFLGAEVVAALRRYADSVATLPRFWNFLH