; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg011277 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011277
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold8:12099724..12103299
RNA-Seq ExpressionSpg011277
SyntenySpg011277
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.6e-0543Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLSTSAESSRSSSSSTIQQ----------GQQVSLEEDDVCRLHAISLTKLASSLGGG
        PRGNR SLQT +L KT                 VEIELP+PDTL TSAESS S+SS+ ++           G    +  DDVC LHA+   K     GGG
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLSTSAESSRSSSSSTIQQ----------GQQVSLEEDDVCRLHAISLTKLASSLGGG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.8e-0944.44Show/hide
Query:  FLDTSVGNLVF---ISSGPRGNRSSLQTRKLAKTVEIELPVPDTLSTSAESSRSSSSSTIQ--------------------------QGQQVSLEEDDVC
        FL  S G LVF   +S  PRGNR +L T KL KTVEIELPVPDTL TSAESS+S+SS+ ++                          +G    +  DD+C
Subjt:  FLDTSVGNLVF---ISSGPRGNRSSLQTRKLAKTVEIELPVPDTLSTSAESSRSSSSSTIQ--------------------------QGQQVSLEEDDVC

Query:  RLHAISLTKLASSLGGG
         LHA+   K A S GGG
Subjt:  RLHAISLTKLASSLGGG

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]1.3e-0741.43Show/hide
Query:  DLWFFEHSGVYKLNPKLYLRVAVKHESVFSVFGAFLDTSVGNLVFISSGPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLSTSAESS
        +LW F  S  +   P  +L        VFS   + L+    N       PRGNR SLQT KL KT                 VEIELPVPDTL TSAES 
Subjt:  DLWFFEHSGVYKLNPKLYLRVAVKHESVFSVFGAFLDTSVGNLVFISSGPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLSTSAESS

Query:  RSSSSST-IQQGQQVSLEEDDVCRLHAISLTKLASSLGGG
         S+S ST I +G       DDVC LHA+   K A   GGG
Subjt:  RSSSSST-IQQGQQVSLEEDDVCRLHAISLTKLASSLGGG

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]1.2e-0851.19Show/hide
Query:  LRVAVKHESVFSVFGAFLDTSVGNLVFISS----------GPRGNRSSLQTRKLAKTVEIELPVPDTLSTSAESSRSSSSSTIQ
        +R  +++ + F    A LD  V NLVFISS           PRGNR SLQ  KL KTVEIELP+PDTL TS+ESS+S+SS+ ++
Subjt:  LRVAVKHESVFSVFGAFLDTSVGNLVFISS----------GPRGNRSSLQTRKLAKTVEIELPVPDTLSTSAESSRSSSSSTIQ

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]1.3e-0745.36Show/hide
Query:  RANQEDLWFFEHSGVYKLNPKLYLRVAVKHESVFSVFGAFLDTSVGNLVFISSGPRGNRSSLQTRKLAKTVEIELPVPDTLSTSAESSRSSSSSTIQ
        R+N+E+L    H    K   + ++R + + ES  ++FG           F++  PRGNR S QT KL KTVEIELPVPDTL TSAESS S+SS+ ++
Subjt:  RANQEDLWFFEHSGVYKLNPKLYLRVAVKHESVFSVFGAFLDTSVGNLVFISSGPRGNRSSLQTRKLAKTVEIELPVPDTLSTSAESSRSSSSSTIQ

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase7.6e-0643Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLSTSAESSRSSSSSTIQQ----------GQQVSLEEDDVCRLHAISLTKLASSLGGG
        PRGNR SLQT +L KT                 VEIELP+PDTL TSAESS S+SS+ ++           G    +  DDVC LHA+   K     GGG
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELPVPDTLSTSAESSRSSSSSTIQQ----------GQQVSLEEDDVCRLHAISLTKLASSLGGG

A0A5A7UAH6 CCHC-type domain-containing protein8.7e-1044.44Show/hide
Query:  FLDTSVGNLVF---ISSGPRGNRSSLQTRKLAKTVEIELPVPDTLSTSAESSRSSSSSTIQ--------------------------QGQQVSLEEDDVC
        FL  S G LVF   +S  PRGNR +L T KL KTVEIELPVPDTL TSAESS+S+SS+ ++                          +G    +  DD+C
Subjt:  FLDTSVGNLVF---ISSGPRGNRSSLQTRKLAKTVEIELPVPDTLSTSAESSRSSSSSTIQ--------------------------QGQQVSLEEDDVC

Query:  RLHAISLTKLASSLGGG
         LHA+   K A S GGG
Subjt:  RLHAISLTKLASSLGGG

A0A5A7V2F2 Uncharacterized protein5.6e-0951.19Show/hide
Query:  LRVAVKHESVFSVFGAFLDTSVGNLVFISS----------GPRGNRSSLQTRKLAKTVEIELPVPDTLSTSAESSRSSSSSTIQ
        +R  +++ + F    A LD  V NLVFISS           PRGNR SLQ  KL KTVEIELP+PDTL TS+ESS+S+SS+ ++
Subjt:  LRVAVKHESVFSVFGAFLDTSVGNLVFISS----------GPRGNRSSLQTRKLAKTVEIELPVPDTLSTSAESSRSSSSSTIQ

A0A5D3BAD1 Retrotrans_gag domain-containing protein6.2e-0841.43Show/hide
Query:  DLWFFEHSGVYKLNPKLYLRVAVKHESVFSVFGAFLDTSVGNLVFISSGPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLSTSAESS
        +LW F  S  +   P  +L        VFS   + L+    N       PRGNR SLQT KL KT                 VEIELPVPDTL TSAES 
Subjt:  DLWFFEHSGVYKLNPKLYLRVAVKHESVFSVFGAFLDTSVGNLVFISSGPRGNRSSLQTRKLAKT-----------------VEIELPVPDTLSTSAESS

Query:  RSSSSST-IQQGQQVSLEEDDVCRLHAISLTKLASSLGGG
         S+S ST I +G       DDVC LHA+   K A   GGG
Subjt:  RSSSSST-IQQGQQVSLEEDDVCRLHAISLTKLASSLGGG

A0A5D3BET3 Uncharacterized protein6.2e-0845.36Show/hide
Query:  RANQEDLWFFEHSGVYKLNPKLYLRVAVKHESVFSVFGAFLDTSVGNLVFISSGPRGNRSSLQTRKLAKTVEIELPVPDTLSTSAESSRSSSSSTIQ
        R+N+E+L    H    K   + ++R + + ES  ++FG           F++  PRGNR S QT KL KTVEIELPVPDTL TSAESS S+SS+ ++
Subjt:  RANQEDLWFFEHSGVYKLNPKLYLRVAVKHESVFSVFGAFLDTSVGNLVFISSGPRGNRSSLQTRKLAKTVEIELPVPDTLSTSAESSRSSSSSTIQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAATCTGGAGCACAAAATTTTCGTGCAAACCAGGAGGATCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCCGAAGCTCTATTTGAGGGTAGCAGT
GAAGCACGAATCTGTGTTTTCTGTGTTCGGGGCATTTCTGGACACATCGGTTGGGAATCTCGTTTTTATTTCTTCAGGACCAAGAGGAAATAGGTCGAGTCTACAGACCA
GGAAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGTCAACATCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGATTCAGCAGGGTCAACAG
GTGTCGTTAGAGGAGGATGATGTCTGTAGGCTTCACGCCATCTCCCTGACTAAGCTAGCAAGTAGTTTGGGAGGGGGAAAACAAAGGAAAGCTGGAATTAACCTAGAAAT
TGTCTTCCCTACTATTCTTCGGGTCAAGAACGACTTGTGGGAGTCTATAGAGATAGGGAATGGGAAGGGAATGCTTGAAGGTTCAAGCACTAGAGAGATATATGGAGATG
AAGATATTCCATGCAAGGAAAGGCCTCAAGATGCAAGACACATGGTGGTAATGCAAGCCAAAGTGGATTCTAGGTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAATCTGGAGCACAAAATTTTCGTGCAAACCAGGAGGATCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCCGAAGCTCTATTTGAGGGTAGCAGT
GAAGCACGAATCTGTGTTTTCTGTGTTCGGGGCATTTCTGGACACATCGGTTGGGAATCTCGTTTTTATTTCTTCAGGACCAAGAGGAAATAGGTCGAGTCTACAGACCA
GGAAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGTCAACATCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGATTCAGCAGGGTCAACAG
GTGTCGTTAGAGGAGGATGATGTCTGTAGGCTTCACGCCATCTCCCTGACTAAGCTAGCAAGTAGTTTGGGAGGGGGAAAACAAAGGAAAGCTGGAATTAACCTAGAAAT
TGTCTTCCCTACTATTCTTCGGGTCAAGAACGACTTGTGGGAGTCTATAGAGATAGGGAATGGGAAGGGAATGCTTGAAGGTTCAAGCACTAGAGAGATATATGGAGATG
AAGATATTCCATGCAAGGAAAGGCCTCAAGATGCAAGACACATGGTGGTAATGCAAGCCAAAGTGGATTCTAGGTGTTGA
Protein sequenceShow/hide protein sequence
MAESGAQNFRANQEDLWFFEHSGVYKLNPKLYLRVAVKHESVFSVFGAFLDTSVGNLVFISSGPRGNRSSLQTRKLAKTVEIELPVPDTLSTSAESSRSSSSSTIQQGQQ
VSLEEDDVCRLHAISLTKLASSLGGGKQRKAGINLEIVFPTILRVKNDLWESIEIGNGKGMLEGSSTREIYGDEDIPCKERPQDARHMVVMQAKVDSRC