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Spg011281 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011281
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Genome locationscaffold8:11030548..11031489
RNA-Seq ExpressionSpg011281
SyntenySpg011281
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021721482.1 uncharacterized protein LOC110689043 [Chenopodium quinoa]1.0e-0429.2Show/hide
Query:  EERSGLGWVVRNSSESLICVGMHSIDERWPIKVLEAKAMWEELKCLHANFECSMNLEVKADSLHLIQCLNNVEEDLSGIKSLTEAIIKLVSNLGVLPFKH
        E  +GLG + R+S+  ++C  +H + ERW +K  EAKA+W  L+   A       + +++DSL ++Q L       S    L E I  + ++   + +  
Subjt:  EERSGLGWVVRNSSESLICVGMHSIDERWPIKVLEAKAMWEELKCLHANFECSMNLEVKADSLHLIQCLNNVEEDLSGIKSLTEAIIKLVSNLGVLPFKH

Query:  YHRSQNGVTHSIA
          R+ N V H +A
Subjt:  YHRSQNGVTHSIA
TrEMBL top hitse value%identityAlignment
A0A803Q0J4 Uncharacterized protein4.1e-0431.78Show/hide
Query:  LSTRVGVASTVSNAAEERSGLGWVVRNSSESLICVGMHSIDERWPIKVLEAKAMWEELKCLHANFECSMNLEVKADSLHLIQCLNNVEEDLSGIKSLTEA
        L   V  A  V N   +  G+G +VRNS   +I   +  I   + +K +EAKA+   LK LH +  CS++L ++ D+L + Q +NN ++  S    L   
Subjt:  LSTRVGVASTVSNAAEERSGLGWVVRNSSESLICVGMHSIDERWPIKVLEAKAMWEELKCLHANFECSMNLEVKADSLHLIQCLNNVEEDLSGIKSLTEA

Query:  IIKLVSNLGVLPFKHYHRSQNGVTHSIAR
        II  +S    +  ++ +RS N   H +AR
Subjt:  IIKLVSNLGVLPFKHYHRSQNGVTHSIAR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCATAACCTCCTTGCGGACTTAAGCACCAGAGTCGGTGTGGCAAGCACCGTATCGAACGCAGCTGAGGAAAGAAGCGGTTTGGGGTGGGTTGTGCGTAACTCCAG
CGAGTCTCTAATTTGTGTAGGCATGCATTCAATAGATGAAAGATGGCCGATCAAAGTCCTAGAGGCGAAAGCAATGTGGGAAGAGCTAAAATGCTTACATGCAAACTTTG
AGTGTTCAATGAATTTGGAAGTCAAAGCGGATTCCCTTCACCTCATCCAATGCTTGAACAACGTTGAAGAGGATTTGTCGGGCATCAAGAGTTTAACAGAAGCCATAATC
AAATTGGTGTCAAATCTAGGTGTGCTCCCCTTTAAGCACTATCATAGATCTCAAAATGGGGTGACTCACTCCATAGCTCGCGAAGGAACTTTTCGTAATGTATTTACGAA
TTTCTCTGAGGACTCTTTCCACGTTGGATGGTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTCATAACCTCCTTGCGGACTTAAGCACCAGAGTCGGTGTGGCAAGCACCGTATCGAACGCAGCTGAGGAAAGAAGCGGTTTGGGGTGGGTTGTGCGTAACTCCAG
CGAGTCTCTAATTTGTGTAGGCATGCATTCAATAGATGAAAGATGGCCGATCAAAGTCCTAGAGGCGAAAGCAATGTGGGAAGAGCTAAAATGCTTACATGCAAACTTTG
AGTGTTCAATGAATTTGGAAGTCAAAGCGGATTCCCTTCACCTCATCCAATGCTTGAACAACGTTGAAGAGGATTTGTCGGGCATCAAGAGTTTAACAGAAGCCATAATC
AAATTGGTGTCAAATCTAGGTGTGCTCCCCTTTAAGCACTATCATAGATCTCAAAATGGGGTGACTCACTCCATAGCTCGCGAAGGAACTTTTCGTAATGTATTTACGAA
TTTCTCTGAGGACTCTTTCCACGTTGGATGGTTTTAG
Protein sequenceShow/hide protein sequence
MLHNLLADLSTRVGVASTVSNAAEERSGLGWVVRNSSESLICVGMHSIDERWPIKVLEAKAMWEELKCLHANFECSMNLEVKADSLHLIQCLNNVEEDLSGIKSLTEAII
KLVSNLGVLPFKHYHRSQNGVTHSIAREGTFRNVFTNFSEDSFHVGWF