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Spg011287 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011287
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold8:11016275..11019860
RNA-Seq ExpressionSpg011287
SyntenySpg011287
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039052.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.3e-1044.44Show/hide
Query:  IVENLMLEKFTSSSQQPN-ETSSPDVMSVMMTDAGTSEERMTEVERIINMLLKIVKEEDYKIVSLKSQMKSRDAVESKEDDTSKEIKQRTSAFDRIEP--
        I EN ++++  SSS++ N ET  P++MSV+ TD  TS+ RMTE+E+ INML+K V+E DY+I SLK+ ++SRDA ES    T+  I++  +     +P  
Subjt:  IVENLMLEKFTSSSQQPN-ETSSPDVMSVMMTDAGTSEERMTEVERIINMLLKIVKEEDYKIVSLKSQMKSRDAVESKEDDTSKEIKQRTSAFDRIEP--

Query:  STTRPSMF
        ST+  S+F
Subjt:  STTRPSMF

KAA0043321.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.8e-1143.1Show/hide
Query:  RSRSKEIQHEDSQTSVIVNKMLRRMAKSSQVETAIVENLMLEKFTSSSQQPN-ETSSPDVMSVMMTDAGTSEERMTEVERIINMLLKIVKEEDYKIVSLK
        RSRS+EIQ  +      V K+  +++K  + E  I EN  +++  S S++ N E S P++MSVM+TD  TSE+RM E+E+ +NML+K V+E D++I  LK
Subjt:  RSRSKEIQHEDSQTSVIVNKMLRRMAKSSQVETAIVENLMLEKFTSSSQQPN-ETSSPDVMSVMMTDAGTSEERMTEVERIINMLLKIVKEEDYKIVSLK

Query:  SQMKSRDAVESKEDDT
        + ++SRDA ES    T
Subjt:  SQMKSRDAVESKEDDT

KAA0050518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.5e-0937.5Show/hide
Query:  RSRSKEIQ-HEDSQTSVIVNKMLRRMAKSSQVETAIVENLMLEKFTSSSQQPN-ETSSPDVMSVMMTDAGTSEERMTEVERIINMLLKIVKEEDYKIVSL
        RSRS+EIQ  ED     +V  +  +++K  +    I EN  +++  S S++ N E   P++MSVM+TD  TSE+RM E+E+ +NML+K V+E+D++I  L
Subjt:  RSRSKEIQ-HEDSQTSVIVNKMLRRMAKSSQVETAIVENLMLEKFTSSSQQPN-ETSSPDVMSVMMTDAGTSEERMTEVERIINMLLKIVKEEDYKIVSL

Query:  KSQMKSRDAVESKEDDTSKEIKQRTSAFDRIEPSTT
        K+ ++SRDA ES    T K   +  +     +P  +
Subjt:  KSQMKSRDAVESKEDDTSKEIKQRTSAFDRIEPSTT

KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.1e-1036.76Show/hide
Query:  RSRSKEIQ-HEDSQTSVIVNKMLRRMAKSSQVETAIVENLMLEKFTSSSQQPNETS-SPDVMSVMMTDAGTSEERMTEVERIINMLLKIVKEEDYKIVSL
        RSRS++IQ  ED     + N +  +++K  +    I EN  +++  S S++ NE +  P++MSVM+TD  TSE+RM E+E+ +NML+K V+E D++I SL
Subjt:  RSRSKEIQ-HEDSQTSVIVNKMLRRMAKSSQVETAIVENLMLEKFTSSSQQPNETS-SPDVMSVMMTDAGTSEERMTEVERIINMLLKIVKEEDYKIVSL

Query:  KSQMKSRDAVESKEDDTSKEIKQRTSAFDRIEPSTT
        K+ ++SRDA+ES      K + +  +     +P  +
Subjt:  KSQMKSRDAVESKEDDTSKEIKQRTSAFDRIEPSTT

KAA0062746.1 Retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-0962.32Show/hide
Query:  VESKEDDTSKEIKQRTSAFDRIEPSTTRPSMFQRMSMVAAGEEDQSLMSTITQHSAFQRLSVCASSKCR
        V SKE D S EIK+RTS FDRI+PSTTR S+F+R+SM    EE+Q L ST TQ SAF+RLS+  S K R
Subjt:  VESKEDDTSKEIKQRTSAFDRIEPSTTRPSMFQRMSMVAAGEEDQSLMSTITQHSAFQRLSVCASSKCR

TrEMBL top hitse value%identityAlignment
A0A5A7SV13 Ty3-gypsy retrotransposon protein9.7e-1041.74Show/hide
Query:  RSRSKEIQ-HEDSQTSVIVNKMLRRMAKSSQVETAIVENLML-EKFTSSSQQPNETSSPDVMSVMMTDAGTSEERMTEVERIINMLLKIVKEEDYKIVSL
        RSRS+EIQ  ED     +   +  +++K  +    I EN  + E ++SS     E   P++MSVM+T+  TSE RM E+E+ +NML+K+V+E DY+I  L
Subjt:  RSRSKEIQ-HEDSQTSVIVNKMLRRMAKSSQVETAIVENLML-EKFTSSSQQPNETSSPDVMSVMMTDAGTSEERMTEVERIINMLLKIVKEEDYKIVSL

Query:  KSQMKSRDAVESKED
        K+ ++SRDA ES++D
Subjt:  KSQMKSRDAVESKED

A0A5A7T6D4 Ty3-gypsy retrotransposon protein2.6e-1044.44Show/hide
Query:  IVENLMLEKFTSSSQQPN-ETSSPDVMSVMMTDAGTSEERMTEVERIINMLLKIVKEEDYKIVSLKSQMKSRDAVESKEDDTSKEIKQRTSAFDRIEP--
        I EN ++++  SSS++ N ET  P++MSV+ TD  TS+ RMTE+E+ INML+K V+E DY+I SLK+ ++SRDA ES    T+  I++  +     +P  
Subjt:  IVENLMLEKFTSSSQQPN-ETSSPDVMSVMMTDAGTSEERMTEVERIINMLLKIVKEEDYKIVSLKSQMKSRDAVESKEDDTSKEIKQRTSAFDRIEP--

Query:  STTRPSMF
        ST+  S+F
Subjt:  STTRPSMF

A0A5A7TP10 Ty3-gypsy retrotransposon protein2.3e-1143.1Show/hide
Query:  RSRSKEIQHEDSQTSVIVNKMLRRMAKSSQVETAIVENLMLEKFTSSSQQPN-ETSSPDVMSVMMTDAGTSEERMTEVERIINMLLKIVKEEDYKIVSLK
        RSRS+EIQ  +      V K+  +++K  + E  I EN  +++  S S++ N E S P++MSVM+TD  TSE+RM E+E+ +NML+K V+E D++I  LK
Subjt:  RSRSKEIQHEDSQTSVIVNKMLRRMAKSSQVETAIVENLMLEKFTSSSQQPN-ETSSPDVMSVMMTDAGTSEERMTEVERIINMLLKIVKEEDYKIVSLK

Query:  SQMKSRDAVESKEDDT
        + ++SRDA ES    T
Subjt:  SQMKSRDAVESKEDDT

A0A5A7U5H1 Ty3-gypsy retrotransposon protein7.5e-1037.5Show/hide
Query:  RSRSKEIQ-HEDSQTSVIVNKMLRRMAKSSQVETAIVENLMLEKFTSSSQQPN-ETSSPDVMSVMMTDAGTSEERMTEVERIINMLLKIVKEEDYKIVSL
        RSRS+EIQ  ED     +V  +  +++K  +    I EN  +++  S S++ N E   P++MSVM+TD  TSE+RM E+E+ +NML+K V+E+D++I  L
Subjt:  RSRSKEIQ-HEDSQTSVIVNKMLRRMAKSSQVETAIVENLMLEKFTSSSQQPN-ETSSPDVMSVMMTDAGTSEERMTEVERIINMLLKIVKEEDYKIVSL

Query:  KSQMKSRDAVESKEDDTSKEIKQRTSAFDRIEPSTT
        K+ ++SRDA ES    T K   +  +     +P  +
Subjt:  KSQMKSRDAVESKEDDTSKEIKQRTSAFDRIEPSTT

A0A5A7U9H0 Ty3-gypsy retrotransposon protein1.5e-1036.76Show/hide
Query:  RSRSKEIQ-HEDSQTSVIVNKMLRRMAKSSQVETAIVENLMLEKFTSSSQQPNETS-SPDVMSVMMTDAGTSEERMTEVERIINMLLKIVKEEDYKIVSL
        RSRS++IQ  ED     + N +  +++K  +    I EN  +++  S S++ NE +  P++MSVM+TD  TSE+RM E+E+ +NML+K V+E D++I SL
Subjt:  RSRSKEIQ-HEDSQTSVIVNKMLRRMAKSSQVETAIVENLMLEKFTSSSQQPNETS-SPDVMSVMMTDAGTSEERMTEVERIINMLLKIVKEEDYKIVSL

Query:  KSQMKSRDAVESKEDDTSKEIKQRTSAFDRIEPSTT
        K+ ++SRDA+ES      K + +  +     +P  +
Subjt:  KSQMKSRDAVESKEDDTSKEIKQRTSAFDRIEPSTT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACAGGGTCGCGATGCTGTGAAGTCATCGACTTGCCGGCCAAGAAATGGACAGCGTCGCGACGCTGTCCTTACAGCAATTCAAAGGATTCAAGACTCAAAAGATTT
GAAGACTAGAAGACTCCAAGAAGAGATCCACAAGTCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATTCGAAAGATCATCAAGCCAACAGGTCGATCCAAA
AGATCATTAAGCCAGCAGGCCGATCATCCAAGAAGATCAACAAGCCAACAAGCCGATCTAAAAGACCATCAAGCCAACAGGCTGATCCAAGAGATCATCAAGCCAGAAGT
CGCTCCAAGGAGATCCAACACGAGGACAGTCAAACTTCTGTCATTGTAAACAAGATGCTGAGACGCATGGCAAAATCTTCTCAAGTTGAAACTGCCATTGTAGAAAATTT
GATGCTTGAAAAATTCACATCTTCTTCTCAGCAACCAAATGAAACATCAAGTCCTGATGTGATGTCTGTTATGATGACTGATGCAGGAACTAGTGAAGAACGGATGACTG
AAGTTGAGAGGATAATCAACATGTTACTGAAGATAGTCAAAGAAGAAGACTACAAAATCGTCTCTCTCAAAAGCCAGATGAAAAGTCGGGATGCCGTTGAATCAAAAGAA
GATGATACTTCAAAAGAAATCAAGCAAAGAACTTCTGCCTTTGACCGCATTGAGCCTTCTACTACTCGACCTTCGATGTTCCAAAGAATGAGTATGGTCGCAGCAGGAGA
AGAAGATCAAAGCTTGATGTCCACCATCACTCAACATTCAGCATTCCAAAGGCTAAGTGTCTGTGCATCAAGCAAGTGTCGAAGCATCAAGAATGCGACCACATTTGGAC
AACATTCTGGAAAAGGAAAAGTTGTGGCCTTAGATGACCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCACAGGGTCGCGATGCTGTGAAGTCATCGACTTGCCGGCCAAGAAATGGACAGCGTCGCGACGCTGTCCTTACAGCAATTCAAAGGATTCAAGACTCAAAAGATTT
GAAGACTAGAAGACTCCAAGAAGAGATCCACAAGTCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATTCGAAAGATCATCAAGCCAACAGGTCGATCCAAA
AGATCATTAAGCCAGCAGGCCGATCATCCAAGAAGATCAACAAGCCAACAAGCCGATCTAAAAGACCATCAAGCCAACAGGCTGATCCAAGAGATCATCAAGCCAGAAGT
CGCTCCAAGGAGATCCAACACGAGGACAGTCAAACTTCTGTCATTGTAAACAAGATGCTGAGACGCATGGCAAAATCTTCTCAAGTTGAAACTGCCATTGTAGAAAATTT
GATGCTTGAAAAATTCACATCTTCTTCTCAGCAACCAAATGAAACATCAAGTCCTGATGTGATGTCTGTTATGATGACTGATGCAGGAACTAGTGAAGAACGGATGACTG
AAGTTGAGAGGATAATCAACATGTTACTGAAGATAGTCAAAGAAGAAGACTACAAAATCGTCTCTCTCAAAAGCCAGATGAAAAGTCGGGATGCCGTTGAATCAAAAGAA
GATGATACTTCAAAAGAAATCAAGCAAAGAACTTCTGCCTTTGACCGCATTGAGCCTTCTACTACTCGACCTTCGATGTTCCAAAGAATGAGTATGGTCGCAGCAGGAGA
AGAAGATCAAAGCTTGATGTCCACCATCACTCAACATTCAGCATTCCAAAGGCTAAGTGTCTGTGCATCAAGCAAGTGTCGAAGCATCAAGAATGCGACCACATTTGGAC
AACATTCTGGAAAAGGAAAAGTTGTGGCCTTAGATGACCAATAG
Protein sequenceShow/hide protein sequence
MAQGRDAVKSSTCRPRNGQRRDAVLTAIQRIQDSKDLKTRRLQEEIHKSTDRSRRSTSQQADSKDHQANRSIQKIIKPAGRSSKKINKPTSRSKRPSSQQADPRDHQARS
RSKEIQHEDSQTSVIVNKMLRRMAKSSQVETAIVENLMLEKFTSSSQQPNETSSPDVMSVMMTDAGTSEERMTEVERIINMLLKIVKEEDYKIVSLKSQMKSRDAVESKE
DDTSKEIKQRTSAFDRIEPSTTRPSMFQRMSMVAAGEEDQSLMSTITQHSAFQRLSVCASSKCRSIKNATTFGQHSGKGKVVALDDQ