; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg011295 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011295
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold8:11216971..11222988
RNA-Seq ExpressionSpg011295
SyntenySpg011295
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.3e-3450.25Show/hide
Query:  DKFIVKYNPLFEPDSDVVTVMMTETRTMEERMAEMQEHINSLMKAIEEKDSQIVQLKSQIENQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRM
        +K + K  P+   D D +    + T       + +++H   +++      + IV++ +  ++      +EVDNS + +QRTSVFDRIKP TTR SVFQR+
Subjt:  DKFIVKYNPLFEPDSDVVTVMMTETRTMEERMAEMQEHINSLMKAIEEKDSQIVQLKSQIENQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRM

Query:  SMATTEEENQCSVSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLGVKLFDEVNSDKKLHSSVPSRMKRKFSVLINTEGSLKVLKRF
        SMAT EEENQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L  K F E N D K+HS VPSRMKRK SV INTEGSL V  RF
Subjt:  SMATTEEENQCSVSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLGVKLFDEVNSDKKLHSSVPSRMKRKFSVLINTEGSLKVLKRF

KAA0062458.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-3463.83Show/hide
Query:  QIENQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATTEEENQCSVSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLG
        +++N  ++ SKEVD S + ++RTS+FDRIKPSTTR SVFQR+SMAT EEENQC  S STR SAF+RLS+STSKK +PSTSVF+RLK+T+DQ +R+  +L 
Subjt:  QIENQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATTEEENQCSVSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLG

Query:  VKLFDEVNSDKKLHSSVPSRMKRKFSVLINTEGSLKVLKRF
         K F E N D K+HS VPS MKR  SV INTEGSL V  RF
Subjt:  VKLFDEVNSDKKLHSSVPSRMKRKFSVLINTEGSLKVLKRF

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.2e-3455.76Show/hide
Query:  MQEHINSLMKAIEEKDSQIVQLKSQIENQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATTEEENQCSVSTSTRPSAFQRLSVSTSKKSQ
        +++H   +++      + IV++ +  ++      +EVDNS + +QRTSVFDRIKP TTR SVFQR+SMAT EE+NQC  ST  R SAF+RLS+STSKK +
Subjt:  MQEHINSLMKAIEEKDSQIVQLKSQIENQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATTEEENQCSVSTSTRPSAFQRLSVSTSKKSQ

Query:  PSTSVFDRLKVTSDQPKRKMDNLGVKLFDEVNSDKKLHSSVPSRMKRKFSVLINTEGSLKVLKRF
        PSTS FDRLK+T+DQ +R+M +L  K F E N D K+H+ VPSRMKRK SV INTEGSL V  RF
Subjt:  PSTSVFDRLKVTSDQPKRKMDNLGVKLFDEVNSDKKLHSSVPSRMKRKFSVLINTEGSLKVLKRF

TYK09793.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.3e-3464.54Show/hide
Query:  QIENQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATTEEENQCSVSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLG
        +++N +   SKEV+NS +  QRTSVFDRIKPSTTR SVFQR+SMAT EEENQC     TR S F+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +  
Subjt:  QIENQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATTEEENQCSVSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLG

Query:  VKLFDEVNSDKKLHSSVPSRMKRKFSVLINTEGSLKVLKRF
         K F E N D K+HS VPSRMKRK SV INTEGSL V  RF
Subjt:  VKLFDEVNSDKKLHSSVPSRMKRKFSVLINTEGSLKVLKRF

TYK27425.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-3463.83Show/hide
Query:  QIENQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATTEEENQCSVSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLG
        +++N  ++ SKEVD S + ++RTS+FDRIKPSTTR SVFQR+SMAT EEENQC  S STR SAF+RLS+STSKK +PSTSVF+RLK+T+DQ +R+  +L 
Subjt:  QIENQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATTEEENQCSVSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLG

Query:  VKLFDEVNSDKKLHSSVPSRMKRKFSVLINTEGSLKVLKRF
         K F E N D K+HS VPS MKR  SV INTEGSL V  RF
Subjt:  VKLFDEVNSDKKLHSSVPSRMKRKFSVLINTEGSLKVLKRF

TrEMBL top hitse value%identityAlignment
A0A5A7TQ06 Retrotransposon gag protein1.1e-3450.25Show/hide
Query:  DKFIVKYNPLFEPDSDVVTVMMTETRTMEERMAEMQEHINSLMKAIEEKDSQIVQLKSQIENQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRM
        +K + K  P+   D D +    + T       + +++H   +++      + IV++ +  ++      +EVDNS + +QRTSVFDRIKP TTR SVFQR+
Subjt:  DKFIVKYNPLFEPDSDVVTVMMTETRTMEERMAEMQEHINSLMKAIEEKDSQIVQLKSQIENQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRM

Query:  SMATTEEENQCSVSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLGVKLFDEVNSDKKLHSSVPSRMKRKFSVLINTEGSLKVLKRF
        SMAT EEENQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L  K F E N D K+HS VPSRMKRK SV INTEGSL V  RF
Subjt:  SMATTEEENQCSVSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLGVKLFDEVNSDKKLHSSVPSRMKRKFSVLINTEGSLKVLKRF

A0A5A7UI09 Retrotransposon gag protein2.5e-3455.76Show/hide
Query:  MQEHINSLMKAIEEKDSQIVQLKSQIENQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATTEEENQCSVSTSTRPSAFQRLSVSTSKKSQ
        +++H   +++      + IV++ +  ++      +EVDNS + +QRTSVFDRIKP TTR SVFQR+SMAT EE+NQC  ST  R SAF+RLS+STSKK +
Subjt:  MQEHINSLMKAIEEKDSQIVQLKSQIENQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATTEEENQCSVSTSTRPSAFQRLSVSTSKKSQ

Query:  PSTSVFDRLKVTSDQPKRKMDNLGVKLFDEVNSDKKLHSSVPSRMKRKFSVLINTEGSLKVLKRF
        PSTS FDRLK+T+DQ +R+M +L  K F E N D K+H+ VPSRMKRK SV INTEGSL V  RF
Subjt:  PSTSVFDRLKVTSDQPKRKMDNLGVKLFDEVNSDKKLHSSVPSRMKRKFSVLINTEGSLKVLKRF

A0A5A7V4E9 Retrotransposon gag protein8.6e-3563.83Show/hide
Query:  QIENQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATTEEENQCSVSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLG
        +++N  ++ SKEVD S + ++RTS+FDRIKPSTTR SVFQR+SMAT EEENQC  S STR SAF+RLS+STSKK +PSTSVF+RLK+T+DQ +R+  +L 
Subjt:  QIENQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATTEEENQCSVSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLG

Query:  VKLFDEVNSDKKLHSSVPSRMKRKFSVLINTEGSLKVLKRF
         K F E N D K+HS VPS MKR  SV INTEGSL V  RF
Subjt:  VKLFDEVNSDKKLHSSVPSRMKRKFSVLINTEGSLKVLKRF

A0A5D3CD55 Ty3-gypsy retrotransposon protein1.1e-3464.54Show/hide
Query:  QIENQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATTEEENQCSVSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLG
        +++N +   SKEV+NS +  QRTSVFDRIKPSTTR SVFQR+SMAT EEENQC     TR S F+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +  
Subjt:  QIENQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATTEEENQCSVSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLG

Query:  VKLFDEVNSDKKLHSSVPSRMKRKFSVLINTEGSLKVLKRF
         K F E N D K+HS VPSRMKRK SV INTEGSL V  RF
Subjt:  VKLFDEVNSDKKLHSSVPSRMKRKFSVLINTEGSLKVLKRF

A0A5D3DVW2 Retrotransposon gag protein8.6e-3563.83Show/hide
Query:  QIENQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATTEEENQCSVSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLG
        +++N  ++ SKEVD S + ++RTS+FDRIKPSTTR SVFQR+SMAT EEENQC  S STR SAF+RLS+STSKK +PSTSVF+RLK+T+DQ +R+  +L 
Subjt:  QIENQHIAESKEVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMATTEEENQCSVSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLG

Query:  VKLFDEVNSDKKLHSSVPSRMKRKFSVLINTEGSLKVLKRF
         K F E N D K+HS VPS MKR  SV INTEGSL V  RF
Subjt:  VKLFDEVNSDKKLHSSVPSRMKRKFSVLINTEGSLKVLKRF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTACTGCCCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGCTGGAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAA
GTTTATTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACA
TCAACTCCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGTGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAAAGAAGTTGACAATTCCAAG
AAGGGTGAACAAAGGACTTCCGTCTTTGATCGCATTAAGCCTTCAACTACTCGACCTTCGGTATTCCAAAGAATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTTC
GGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTTTCCACATCGAAGAAAAGTCAACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATC
AACCTAAAAGAAAGATGGACAACTTGGGGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCATAGTAGCGTCCCGTCACGTATGAAGAGGAAGTTCTCTGTT
CTCATAAATACAGAAGGTTCCTTGAAGGTTCTAAAGCGCTTCACTGGAGTTCCTTCTCTCAAAGTAGGTTGTTCTCACATTGCTTCGCTGCAGTTTCCTTCCTCCAAGTT
TGAAACTTCGTCGAAGGTTGTTCTCACGTTGCTTCGCTGCAGTTTCCTTTCTCCAATTCCTTCCTCCAAATTCGAAGGTTCTCACGTTGCTTCGTTGCAGTTCCCTCCTC
CAAGTTCGAAGGATCCTCTAAGTTCGAAGGTTCTCAAGTGTTACGCTTCCCTCTTTAAGTTCGAAGGTCCTGACACTGTGCAGTTTCCTTCCTCCAAGTTCGAAGGATCC
TCCAAGTCGAAGTTCCTTCCTCCAAATTCGAAGGTTCTCATCCTAGTTCTTTCTCCCCAAGTTCCGAAGGATCCTCCAAGTCGAAGGTTCTCACGTTGCTTCGCTGCAGT
TCCTTCCTCCAAGTTCGAAGGTTGGTTCTCATCTGCTTCGTTGGAGTTCTTTCTCCCCAAGTTTGAAACTTCGTCGAAGGTTCTCAAGTTGCTTTGCTGCAGTTCCTTCC
TCCAAGTTCGAAGGTTCCTCCAAGTCGAAGAGTTCGAAGGTTCCTCCAAGTCGAAGTTCTCACGTTGCTTCGTTGTAGTTCCTTCCTCCAAGTTCGAGGGTGGTTCTCAT
CCGCTTCGCTGGAGTTCTTTCTCCCTCCCAAGTTTGAAACTTCTCACGTTGCTTCGCTGTTCCTTCCTCCAAGTTCGAGGGTGGTTCTCATCCCGCTTCGCTGGAGTTCT
TTCTCCCCAATTCGAAGGGTTCTTTCTCTCCAAATTTGAAACTTCTCATGTGCTTCATTGCAGTTCGAAGGCAAATCTGGTGACCACCCCTGCAGGAAACTACAGTCATC
AAAGTGACTGGTCTAGACAGGTTCTGAAATCACTGCAAGTGAAGTTGATGACGACCGTGGTGACCACTCCTGTAGGAAACTACAGTCATCAAAGTGACTGGTCTATACAG
GTGGTGAAATCACTGCAAGTGAAGTTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGGCAGGTGGTGAAATCACTGCAAGT
GAAGTTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCACCAAAGTGACTGGTCTAGACAGCTGGTGAAATCACTACAAGAGAAGTTGATGACGACCGTGG
TGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGACTTCAACAATCCTTGAAGACCAAAGACTCTTCAAGACTTCAAGACTTCAAGACTTC
TTGAAGACTGAAGACCCTTCAAGACTAGAAGACTTCAACAATCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCTACTGCCCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGCTGGAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAA
GTTTATTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACA
TCAACTCCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGTGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAAAGAAGTTGACAATTCCAAG
AAGGGTGAACAAAGGACTTCCGTCTTTGATCGCATTAAGCCTTCAACTACTCGACCTTCGGTATTCCAAAGAATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTTC
GGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTTTCCACATCGAAGAAAAGTCAACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATC
AACCTAAAAGAAAGATGGACAACTTGGGGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCATAGTAGCGTCCCGTCACGTATGAAGAGGAAGTTCTCTGTT
CTCATAAATACAGAAGGTTCCTTGAAGGTTCTAAAGCGCTTCACTGGAGTTCCTTCTCTCAAAGTAGGTTGTTCTCACATTGCTTCGCTGCAGTTTCCTTCCTCCAAGTT
TGAAACTTCGTCGAAGGTTGTTCTCACGTTGCTTCGCTGCAGTTTCCTTTCTCCAATTCCTTCCTCCAAATTCGAAGGTTCTCACGTTGCTTCGTTGCAGTTCCCTCCTC
CAAGTTCGAAGGATCCTCTAAGTTCGAAGGTTCTCAAGTGTTACGCTTCCCTCTTTAAGTTCGAAGGTCCTGACACTGTGCAGTTTCCTTCCTCCAAGTTCGAAGGATCC
TCCAAGTCGAAGTTCCTTCCTCCAAATTCGAAGGTTCTCATCCTAGTTCTTTCTCCCCAAGTTCCGAAGGATCCTCCAAGTCGAAGGTTCTCACGTTGCTTCGCTGCAGT
TCCTTCCTCCAAGTTCGAAGGTTGGTTCTCATCTGCTTCGTTGGAGTTCTTTCTCCCCAAGTTTGAAACTTCGTCGAAGGTTCTCAAGTTGCTTTGCTGCAGTTCCTTCC
TCCAAGTTCGAAGGTTCCTCCAAGTCGAAGAGTTCGAAGGTTCCTCCAAGTCGAAGTTCTCACGTTGCTTCGTTGTAGTTCCTTCCTCCAAGTTCGAGGGTGGTTCTCAT
CCGCTTCGCTGGAGTTCTTTCTCCCTCCCAAGTTTGAAACTTCTCACGTTGCTTCGCTGTTCCTTCCTCCAAGTTCGAGGGTGGTTCTCATCCCGCTTCGCTGGAGTTCT
TTCTCCCCAATTCGAAGGGTTCTTTCTCTCCAAATTTGAAACTTCTCATGTGCTTCATTGCAGTTCGAAGGCAAATCTGGTGACCACCCCTGCAGGAAACTACAGTCATC
AAAGTGACTGGTCTAGACAGGTTCTGAAATCACTGCAAGTGAAGTTGATGACGACCGTGGTGACCACTCCTGTAGGAAACTACAGTCATCAAAGTGACTGGTCTATACAG
GTGGTGAAATCACTGCAAGTGAAGTTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGGCAGGTGGTGAAATCACTGCAAGT
GAAGTTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCACCAAAGTGACTGGTCTAGACAGCTGGTGAAATCACTACAAGAGAAGTTGATGACGACCGTGG
TGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGACTTCAACAATCCTTGAAGACCAAAGACTCTTCAAGACTTCAAGACTTCAAGACTTC
TTGAAGACTGAAGACCCTTCAAGACTAGAAGACTTCAACAATCCTTGA
Protein sequenceShow/hide protein sequence
MGSTAHCCFNELTLQEDKASIAGGQETTLQGAYTNDKFIVKYNPLFEPDSDVVTVMMTETRTMEERMAEMQEHINSLMKAIEEKDSQIVQLKSQIENQHIAESKEVDNSK
KGEQRTSVFDRIKPSTTRPSVFQRMSMATTEEENQCSVSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLGVKLFDEVNSDKKLHSSVPSRMKRKFSV
LINTEGSLKVLKRFTGVPSLKVGCSHIASLQFPSSKFETSSKVVLTLLRCSFLSPIPSSKFEGSHVASLQFPPPSSKDPLSSKVLKCYASLFKFEGPDTVQFPSSKFEGS
SKSKFLPPNSKVLILVLSPQVPKDPPSRRFSRCFAAVPSSKFEGWFSSASLEFFLPKFETSSKVLKLLCCSSFLQVRRFLQVEEFEGSSKSKFSRCFVVVPSSKFEGGSH
PLRWSSFSLPSLKLLTLLRCSFLQVRGWFSSRFAGVLSPQFEGFFLSKFETSHVLHCSSKANLVTTPAGNYSHQSDWSRQVLKSLQVKLMTTVVTTPVGNYSHQSDWSIQ
VVKSLQVKLMTTVVTTPAGNYSHQSDWSRQVVKSLQVKLMTTVVTTPAGNYSHQSDWSRQLVKSLQEKLMTTVVTTPAGNYSHQSDWSRQVTSTILEDQRLFKTSRLQDF
LKTEDPSRLEDFNNP