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Spg011307 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011307
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold8:10222568..10223653
RNA-Seq ExpressionSpg011307
SyntenySpg011307
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025361.1 uncharacterized protein E6C27_scaffold1204G00450 [Cucumis melo var. makuwa]2.6e-2065.69Show/hide
Query:  MTEILSSRLYGTVCTQ-----------------VEIELLVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKL
        MTEILS RLYGTVCTQ                 VEIEL V DTL   AES  S+SSYF NQVMSGLH V    FNVSVGST IVRGDDVCW HAVFRAK 
Subjt:  MTEILSSRLYGTVCTQ-----------------VEIELLVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKL

Query:  AG
        AG
Subjt:  AG

KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]3.2e-2358.14Show/hide
Query:  MTEILSSRLYGTVCTQVEIELLVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKLA
        MTEILS RLYGTVCTQV+IEL +PDTLPTSAESS S+ +                YF NQVMSGLH V    FNVSVGSTGIVRGDDVCW HAVFR    
Subjt:  MTEILSSRLYGTVCTQVEIELLVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKLA

Query:  GCEKRARNRKEAVIEAWQSRHIREPASRR
          +K A +  E V   +QSR +    SRR
Subjt:  GCEKRARNRKEAVIEAWQSRHIREPASRR

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-1779.71Show/hide
Query:  VEIELLVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKLAG
        VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    FNVSVGSTGIVRGDDVC  H VFRAK AG
Subjt:  VEIELLVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKLAG

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]2.5e-2366.67Show/hide
Query:  MTEILSSRLYGTVCTQ-----------------VEIELLVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKL
        MTEILS RL+GTVCTQ                 VEIEL VPDTLPTS ESS S+SSYF NQVMSGLH V    FN+SV STGIVRGDDVCW HAVFRAK 
Subjt:  MTEILSSRLYGTVCTQ-----------------VEIELLVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKL

Query:  AG
         G
Subjt:  AG

TYK05030.1 uncharacterized protein E5676_scaffold143G002850 [Cucumis melo var. makuwa]1.5e-1544.2Show/hide
Query:  MTEILSSRLYGTVCTQ-----------------VEIELLVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKL
        MTEILS +LY TVCT                  VEIEL VPDTLPTSAES   +     + ++S        RFNVSVGS GI+RGDDVCW HAVFRAK+
Subjt:  MTEILSSRLYGTVCTQ-----------------VEIELLVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKL

Query:  AGCEKRARNRKEAVIEAWQSR-HIREPASRRWSLGVST
        AG  +         +  WQ++   ++P   +   G ST
Subjt:  AGCEKRARNRKEAVIEAWQSR-HIREPASRRWSLGVST

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein1.6e-2358.14Show/hide
Query:  MTEILSSRLYGTVCTQVEIELLVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKLA
        MTEILS RLYGTVCTQV+IEL +PDTLPTSAESS S+ +                YF NQVMSGLH V    FNVSVGSTGIVRGDDVCW HAVFR    
Subjt:  MTEILSSRLYGTVCTQVEIELLVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKLA

Query:  GCEKRARNRKEAVIEAWQSRHIREPASRR
          +K A +  E V   +QSR +    SRR
Subjt:  GCEKRARNRKEAVIEAWQSRHIREPASRR

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein5.8e-1879.71Show/hide
Query:  VEIELLVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKLAG
        VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    FNVSVGSTGIVRGDDVC  H VFRAK AG
Subjt:  VEIELLVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKLAG

A0A5D3BMJ4 Retrotrans_gag domain-containing protein1.2e-2366.67Show/hide
Query:  MTEILSSRLYGTVCTQ-----------------VEIELLVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKL
        MTEILS RL+GTVCTQ                 VEIEL VPDTLPTS ESS S+SSYF NQVMSGLH V    FN+SV STGIVRGDDVCW HAVFRAK 
Subjt:  MTEILSSRLYGTVCTQ-----------------VEIELLVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKL

Query:  AG
         G
Subjt:  AG

A0A5D3C0X3 Retrotrans_gag domain-containing protein7.1e-1644.2Show/hide
Query:  MTEILSSRLYGTVCTQ-----------------VEIELLVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKL
        MTEILS +LY TVCT                  VEIEL VPDTLPTSAES   +     + ++S        RFNVSVGS GI+RGDDVCW HAVFRAK+
Subjt:  MTEILSSRLYGTVCTQ-----------------VEIELLVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKL

Query:  AGCEKRARNRKEAVIEAWQSR-HIREPASRRWSLGVST
        AG  +         +  WQ++   ++P   +   G ST
Subjt:  AGCEKRARNRKEAVIEAWQSR-HIREPASRRWSLGVST

A0A5D3DIE3 Retrotrans_gag domain-containing protein1.2e-2065.69Show/hide
Query:  MTEILSSRLYGTVCTQ-----------------VEIELLVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKL
        MTEILS RLYGTVCTQ                 VEIEL V DTL   AES  S+SSYF NQVMSGLH V    FNVSVGST IVRGDDVCW HAVFRAK 
Subjt:  MTEILSSRLYGTVCTQ-----------------VEIELLVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKL

Query:  AG
        AG
Subjt:  AG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCTCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTT
GGCCTCACGCCGTCTTTCGGGCTAAGCTAGCAGGATGCGAAAAGAGGGCAAGGAACCGAAAAGAAGCAGTGATAGAGGCTTGGCAAAGTAGGCACATCCGAGAGCCAGCG
TCTCGACGCTGGTCTTTGGGCGTCTCGACGCTGGAACTTTCCTTGTTTGATTCAGGCGGCAAAAGAACACAGCGTCGAGACGCTGTGTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCTCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTT
GGCCTCACGCCGTCTTTCGGGCTAAGCTAGCAGGATGCGAAAAGAGGGCAAGGAACCGAAAAGAAGCAGTGATAGAGGCTTGGCAAAGTAGGCACATCCGAGAGCCAGCG
TCTCGACGCTGGTCTTTGGGCGTCTCGACGCTGGAACTTTCCTTGTTTGATTCAGGCGGCAAAAGAACACAGCGTCGAGACGCTGTGTTATAG
Protein sequenceShow/hide protein sequence
MTEILSSRLYGTVCTQVEIELLVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWPHAVFRAKLAGCEKRARNRKEAVIEAWQSRHIREPA
SRRWSLGVSTLELSLFDSGGKRTQRRDAVL