; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg011322 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011322
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionsplicing factor U2af small subunit B-like
Genome locationscaffold8:12458019..12459895
RNA-Seq ExpressionSpg011322
SyntenySpg011322
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0089701 - U2AF (cellular component)
GO:0030628 - pre-mRNA 3'-splice site binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR000571 - Zinc finger, CCCH-type
IPR003954 - RNA recognition motif domain, eukaryote
IPR009145 - U2 auxiliary factor small subunit
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139466.1 splicing factor U2af small subunit B [Cucumis sativus]2.7e-10568.15Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPR IQDHFE+FYEDLFQEL+KYGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV

Query:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP-----------------------------------------------
        CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVD       R                                                  
Subjt:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP-----------------------------------------------

Query:  ----------------------NERDAYHESRSRRHRGTSPGRRRSRSRSPRGRKNRNPVREGSEERRAKIEQWNREREQAANDNNANSGSNKNSHERSY
                              +ERDAYHESRSRRHR TSPG  RSRSRSPRGRKNR+PVREGSEERRAKIEQWN+EREQ  NDNNANS  N+N+HE+SY
Subjt:  ----------------------NERDAYHESRSRRHRGTSPGRRRSRSRSPRGRKNRNPVREGSEERRAKIEQWNREREQAANDNNANSGSNKNSHERSY

Query:  NGDVKYANQACGYD
        + +VKYANQ CGY+
Subjt:  NGDVKYANQACGYD

XP_008461981.1 PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo]1.1e-10367.52Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPR+IQDHFE+FYEDLFQEL+KYGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV

Query:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP-----------------------------------------------
        CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVD       R                                                  
Subjt:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP-----------------------------------------------

Query:  ----------------------NERDAYHESRSRRHRGTSPGRRRSRSRSPRGRKNRNPVREGSEERRAKIEQWNREREQAANDNNANSGSNKNSHERSY
                              +ERDAYHE+RSRR R TSPG  RSRSRSPRGRKNR+P REGSEERRAKIEQWNREREQ  NDNNA S  N+NSHE+SY
Subjt:  ----------------------NERDAYHESRSRRHRGTSPGRRRSRSRSPRGRKNRNPVREGSEERRAKIEQWNREREQAANDNNANSGSNKNSHERSY

Query:  NGDVKYANQACGYD
        + +VKYANQ CGY+
Subjt:  NGDVKYANQACGYD

XP_022964867.1 splicing factor U2af small subunit B-like [Cucurbita moschata]2.7e-10567.09Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPR+IQDHFE+FYEDLFQEL+KYGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV

Query:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP-----------------------------------------------
        CDNLADHMVGNVYVQF+EEEQAANALRNLSGRFYAGRPIIVD       R                                                  
Subjt:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP-----------------------------------------------

Query:  ----------------------NERDAYHESRSRRHRGTSPGRRRSRSRSPRGRKNRNPVREGSEERRAKIEQWNREREQAANDNNANSGSNKNSHERSY
                              +ERDAYH+SR+RRHR TSPG R SRSRSPRGRKNR+PVREGSEERRAKIEQWNRE+EQ  N NN+NS  ++NSHE+SY
Subjt:  ----------------------NERDAYHESRSRRHRGTSPGRRRSRSRSPRGRKNRNPVREGSEERRAKIEQWNREREQAANDNNANSGSNKNSHERSY

Query:  NGDVKYANQACGY
        NGDV+Y NQ CGY
Subjt:  NGDVKYANQACGY

XP_022970323.1 splicing factor U2af small subunit B-like [Cucurbita maxima]1.9e-10367.09Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPR+IQDHFE+FYEDLFQEL+KYGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV

Query:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP-----------------------------------------------
        CDNLADHMVGNVYVQF+EEEQAANALRNLSGRFYAGRPIIVD       R                                                  
Subjt:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP-----------------------------------------------

Query:  ----------------------NERDAYHESRSRRHRGTSPGRRRSRSRSPRGRKNRNPVREGSEERRAKIEQWNREREQAANDNNANSGSNKNSHERSY
                              +ERDAYH+SR+RRHR TSPG R SRSRSPRGRKNR+PVRE SEERRAKIEQWNRE+EQ  N NNANS  N++SHE+SY
Subjt:  ----------------------NERDAYHESRSRRHRGTSPGRRRSRSRSPRGRKNRNPVREGSEERRAKIEQWNREREQAANDNNANSGSNKNSHERSY

Query:  NGDVKYANQACGY
        NGDV+Y NQ CGY
Subjt:  NGDVKYANQACGY

XP_023519661.1 splicing factor U2af small subunit B-like [Cucurbita pepo subsp. pepo]3.2e-10667.73Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPR+IQDHFE+FYEDLFQEL+KYGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV

Query:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP-----------------------------------------------
        CDNLADHMVGNVYVQF+EEEQAANALRNLSGRFYAGRPIIVD       R                                                  
Subjt:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP-----------------------------------------------

Query:  ----------------------NERDAYHESRSRRHRGTSPGRRRSRSRSPRGRKNRNPVREGSEERRAKIEQWNREREQAANDNNANSGSNKNSHERSY
                              +ERDAYH+SR+RRHR TSPG R SRSRSPRGRKNR+PVREGSEERRAKIEQWNRE+EQ  N NNANS  N+NSHE+SY
Subjt:  ----------------------NERDAYHESRSRRHRGTSPGRRRSRSRSPRGRKNRNPVREGSEERRAKIEQWNREREQAANDNNANSGSNKNSHERSY

Query:  NGDVKYANQACGY
        NGDV+Y NQ CGY
Subjt:  NGDVKYANQACGY

TrEMBL top hitse value%identityAlignment
A0A0A0LVA4 Uncharacterized protein1.3e-10568.15Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPR IQDHFE+FYEDLFQEL+KYGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV

Query:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP-----------------------------------------------
        CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVD       R                                                  
Subjt:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP-----------------------------------------------

Query:  ----------------------NERDAYHESRSRRHRGTSPGRRRSRSRSPRGRKNRNPVREGSEERRAKIEQWNREREQAANDNNANSGSNKNSHERSY
                              +ERDAYHESRSRRHR TSPG  RSRSRSPRGRKNR+PVREGSEERRAKIEQWN+EREQ  NDNNANS  N+N+HE+SY
Subjt:  ----------------------NERDAYHESRSRRHRGTSPGRRRSRSRSPRGRKNRNPVREGSEERRAKIEQWNREREQAANDNNANSGSNKNSHERSY

Query:  NGDVKYANQACGYD
        + +VKYANQ CGY+
Subjt:  NGDVKYANQACGYD

A0A1S3CFU2 splicing factor U2af small subunit B-like5.4e-10467.52Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPR+IQDHFE+FYEDLFQEL+KYGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV

Query:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP-----------------------------------------------
        CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVD       R                                                  
Subjt:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP-----------------------------------------------

Query:  ----------------------NERDAYHESRSRRHRGTSPGRRRSRSRSPRGRKNRNPVREGSEERRAKIEQWNREREQAANDNNANSGSNKNSHERSY
                              +ERDAYHE+RSRR R TSPG  RSRSRSPRGRKNR+P REGSEERRAKIEQWNREREQ  NDNNA S  N+NSHE+SY
Subjt:  ----------------------NERDAYHESRSRRHRGTSPGRRRSRSRSPRGRKNRNPVREGSEERRAKIEQWNREREQAANDNNANSGSNKNSHERSY

Query:  NGDVKYANQACGYD
        + +VKYANQ CGY+
Subjt:  NGDVKYANQACGYD

A0A5D3CV58 Splicing factor U2af small subunit B-like5.4e-10467.52Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPR+IQDHFE+FYEDLFQEL+KYGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV

Query:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP-----------------------------------------------
        CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVD       R                                                  
Subjt:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP-----------------------------------------------

Query:  ----------------------NERDAYHESRSRRHRGTSPGRRRSRSRSPRGRKNRNPVREGSEERRAKIEQWNREREQAANDNNANSGSNKNSHERSY
                              +ERDAYHE+RSRR R TSPG  RSRSRSPRGRKNR+P REGSEERRAKIEQWNREREQ  NDNNA S  N+NSHE+SY
Subjt:  ----------------------NERDAYHESRSRRHRGTSPGRRRSRSRSPRGRKNRNPVREGSEERRAKIEQWNREREQAANDNNANSGSNKNSHERSY

Query:  NGDVKYANQACGYD
        + +VKYANQ CGY+
Subjt:  NGDVKYANQACGYD

A0A6J1HM65 splicing factor U2af small subunit B-like1.3e-10567.09Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPR+IQDHFE+FYEDLFQEL+KYGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV

Query:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP-----------------------------------------------
        CDNLADHMVGNVYVQF+EEEQAANALRNLSGRFYAGRPIIVD       R                                                  
Subjt:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP-----------------------------------------------

Query:  ----------------------NERDAYHESRSRRHRGTSPGRRRSRSRSPRGRKNRNPVREGSEERRAKIEQWNREREQAANDNNANSGSNKNSHERSY
                              +ERDAYH+SR+RRHR TSPG R SRSRSPRGRKNR+PVREGSEERRAKIEQWNRE+EQ  N NN+NS  ++NSHE+SY
Subjt:  ----------------------NERDAYHESRSRRHRGTSPGRRRSRSRSPRGRKNRNPVREGSEERRAKIEQWNREREQAANDNNANSGSNKNSHERSY

Query:  NGDVKYANQACGY
        NGDV+Y NQ CGY
Subjt:  NGDVKYANQACGY

A0A6J1I2J7 splicing factor U2af small subunit B-like9.3e-10467.09Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPR+IQDHFE+FYEDLFQEL+KYGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV

Query:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP-----------------------------------------------
        CDNLADHMVGNVYVQF+EEEQAANALRNLSGRFYAGRPIIVD       R                                                  
Subjt:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP-----------------------------------------------

Query:  ----------------------NERDAYHESRSRRHRGTSPGRRRSRSRSPRGRKNRNPVREGSEERRAKIEQWNREREQAANDNNANSGSNKNSHERSY
                              +ERDAYH+SR+RRHR TSPG R SRSRSPRGRKNR+PVRE SEERRAKIEQWNRE+EQ  N NNANS  N++SHE+SY
Subjt:  ----------------------NERDAYHESRSRRHRGTSPGRRRSRSRSPRGRKNRNPVREGSEERRAKIEQWNREREQAANDNNANSGSNKNSHERSY

Query:  NGDVKYANQACGY
        NGDV+Y NQ CGY
Subjt:  NGDVKYANQACGY

SwissProt top hitse value%identityAlignment
Q6AUG0 Splicing factor U2af small subunit B3.5e-6850.33Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P++SPT++L+NMYQRPDMITPGVDAQG PIDP ++Q+HFEDFYED+++ELSK+GE+E+LNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV

Query:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP----------------------------------NERDAYHESR--S
        CDNLADHM+GNVYVQFREEEQA  A   L GRFY+GRPIIV+       R                                       R ++  SR  S
Subjt:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP----------------------------------NERDAYHESR--S

Query:  RRHR-------------------------------------------GTSPGRRRSRSRSPR------------GRKNRNPVREGSEERRAKIEQWNRER
         RHR                                           G   GRR   SR  R             R+ R+PVRE SEERRAKIEQWNRER
Subjt:  RRHR-------------------------------------------GTSPGRRRSRSRSPR------------GRKNRNPVREGSEERRAKIEQWNRER

Query:  EQ
        E+
Subjt:  EQ

Q94535 Splicing factor U2af 38 kDa subunit4.2e-4547.47Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQG--NPIDPREIQDHFEDFYEDLFQEL-SKYGEIES
        MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSR+H KP+ S T+LL N+Y  P       D       +   E+Q+H+++F+ED+F E   KYGEIE 
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQG--NPIDPREIQDHFEDFYEDLFQEL-SKYGEIES

Query:  LNVCDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRS-TDTLRACPNE-------------------------RDAYHESRSRRHRGTS
        +NVCDNL DH+VGNVY++FR E  A  A  +L+ R++ GRP+  +L   TD   AC  +                         R  Y   R  R R  S
Subjt:  LNVCDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRS-TDTLRACPNE-------------------------RDAYHESRSRRHRGTS

Query:  PGRR---RSRSRSPRGR
        PGRR   RSRSRSP  R
Subjt:  PGRR---RSRSRSPRGR

Q9FMY5 Splicing factor U2af small subunit B2.0e-7153.02Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITPGVD QG P+DP +IQDHFEDFYED+F+EL+K+GE+ESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV

Query:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP---------------------------------NERDAYHESRSRRH
        CDNLADHM+GNVYV F+EE+ AA AL+ L GRFY+GRPII D       R                                      R +Y      R 
Subjt:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP---------------------------------NERDAYHESRSRRH

Query:  RGTSPGRRRSRSR-------------------------------------SPRGRKNRNPVREGSEERRAKIEQWNREREQ
        R  SP R+R  SR                                     SP+  ++   VREGSEERRA+IEQWNRER++
Subjt:  RGTSPGRRRSRSR-------------------------------------SPRGRKNRNPVREGSEERRAKIEQWNREREQ

Q9S709 Splicing factor U2af small subunit A9.0e-7252.76Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITPGVDAQG P+DPR+IQ+HFEDF+EDLF+EL K+GEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV

Query:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDL---------------------------------------------------------
        CDNLADHM+GNVYVQF+EE+QAA AL+ L GRFY+GRPII D                                                          
Subjt:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDL---------------------------------------------------------

Query:  --------RSTDTLRACPNERDAYHESRSRRHRGTSPGRR------RSRSRSPRGRKNRNPV--------REGSEERRAKIEQWNREREQ
                   D  R  P+ R+  H  R R       G+R      R      RGR+  +P         REGSEERRA+IEQWNRERE+
Subjt:  --------RSTDTLRACPNERDAYHESRSRRHRGTSPGRR------RSRSRSPRGRKNRNPV--------REGSEERRAKIEQWNREREQ

Q9ZQW8 Splicing factor U2af small subunit A1.5e-7154.86Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH KPS+SPTLLLSNMY RPDMITPG+DAQGNPIDP +IQ  FEDFYED+F+ELSKYGEIESL+V
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV

Query:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP-----------------------------------------------
        CDN ADHM+GNVYVQFREE+QAA AL+ L+GR+Y+GRPIIV+       R                                                  
Subjt:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP-----------------------------------------------

Query:  ---------NERDAYHESRSRRH----RGTS-----PGRRRSR-----------SRSPRGRKNRNPVREGSEERRAKIEQWNREREQA
                  + D    SRSR H    RG S      G RRS            SR     + R+PVR+GSEERRA+IEQWNRERE A
Subjt:  ---------NERDAYHESRSRRH----RGTS-----PGRRRSR-----------SRSPRGRKNRNPVREGSEERRAKIEQWNREREQA

Arabidopsis top hitse value%identityAlignment
AT1G10320.1 Zinc finger C-x8-C-x5-C-x3-H type family protein8.2e-2845.8Show/hide
Query:  FGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNVCDNLADHM
        FGTE+D+ +CPF+ K GACR G RCSR+H  P+ S TLL+ NMY  P  IT   D +G      E +  +E+FYED+  E  KYGE+ +  VC N + H+
Subjt:  FGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNVCDNLADHM

Query:  VGNVYVQFREEEQAANALRNLSGRFYAGRPI
         GNVYV +R  E A  A ++++GR++AG+ +
Subjt:  VGNVYVQFREEEQAANALRNLSGRFYAGRPI

AT1G27650.1 U2 snRNP auxiliary factor small subunit, putative6.4e-7352.76Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITPGVDAQG P+DPR+IQ+HFEDF+EDLF+EL K+GEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV

Query:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDL---------------------------------------------------------
        CDNLADHM+GNVYVQF+EE+QAA AL+ L GRFY+GRPII D                                                          
Subjt:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDL---------------------------------------------------------

Query:  --------RSTDTLRACPNERDAYHESRSRRHRGTSPGRR------RSRSRSPRGRKNRNPV--------REGSEERRAKIEQWNREREQ
                   D  R  P+ R+  H  R R       G+R      R      RGR+  +P         REGSEERRA+IEQWNRERE+
Subjt:  --------RSTDTLRACPNERDAYHESRSRRHRGTSPGRR------RSRSRSPRGRKNRNPV--------REGSEERRAKIEQWNREREQ

AT1G27650.2 U2 snRNP auxiliary factor small subunit, putative1.0e-4144.17Show/hide
Query:  MYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNVCDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDL-------
        MYQRPDMITPGVDAQG P+DPR+IQ+HFEDF+EDLF+EL K+GEIESLN+CDNLADHM+GNVYVQF+EE+QAA AL+ L GRFY+GRPII D        
Subjt:  MYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNVCDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDL-------

Query:  ----------------------------------------------------------RSTDTLRACPNERDAYHESRSRRHRGTSPGRR------RSRS
                                                                     D  R  P+ R+  H  R R       G+R      R   
Subjt:  ----------------------------------------------------------RSTDTLRACPNERDAYHESRSRRHRGTSPGRR------RSRS

Query:  RSPRGRKNRNPV--------REGSEERRAKIEQWNREREQ
           RGR+  +P         REGSEERRA+IEQWNRERE+
Subjt:  RSPRGRKNRNPV--------REGSEERRAKIEQWNREREQ

AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein1.4e-7253.02Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITPGVD QG P+DP +IQDHFEDFYED+F+EL+K+GE+ESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV

Query:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP---------------------------------NERDAYHESRSRRH
        CDNLADHM+GNVYV F+EE+ AA AL+ L GRFY+GRPII D       R                                      R +Y      R 
Subjt:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP---------------------------------NERDAYHESRSRRH

Query:  RGTSPGRRRSRSR-------------------------------------SPRGRKNRNPVREGSEERRAKIEQWNREREQ
        R  SP R+R  SR                                     SP+  ++   VREGSEERRA+IEQWNRER++
Subjt:  RGTSPGRRRSRSR-------------------------------------SPRGRKNRNPVREGSEERRAKIEQWNREREQ

AT5G42820.2 Zinc finger C-x8-C-x5-C-x3-H type family protein1.4e-7253.02Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITPGVD QG P+DP +IQDHFEDFYED+F+EL+K+GE+ESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNV

Query:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP---------------------------------NERDAYHESRSRRH
        CDNLADHM+GNVYV F+EE+ AA AL+ L GRFY+GRPII D       R                                      R +Y      R 
Subjt:  CDNLADHMVGNVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACP---------------------------------NERDAYHESRSRRH

Query:  RGTSPGRRRSRSR-------------------------------------SPRGRKNRNPVREGSEERRAKIEQWNREREQ
        R  SP R+R  SR                                     SP+  ++   VREGSEERRA+IEQWNRER++
Subjt:  RGTSPGRRRSRSR-------------------------------------SPRGRKNRNPVREGSEERRAKIEQWNREREQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAGCATTTGGCATCCATATTCGGGACGGAGAAGGACAGGGTTAACTGTCCCTTCTACTTCAAGATCGGGGCCTGCCGGCACGGTGATCGGTGTTCGCGGTTGCA
TACGAAGCCGAGCATAAGCCCCACCCTCTTGCTTTCTAATATGTATCAGAGACCCGACATGATTACTCCTGGTGTCGACGCGCAGGGGAATCCGATTGACCCTCGCGAGA
TTCAGGACCATTTTGAGGATTTCTATGAAGATTTATTCCAGGAACTGAGCAAGTACGGGGAGATTGAAAGTTTGAATGTTTGTGACAATCTAGCTGACCACATGGTGGGT
AATGTCTATGTTCAATTTCGAGAGGAAGAACAAGCTGCAAATGCTCTTCGGAATCTGAGTGGCAGATTTTATGCTGGACGTCCAATCATTGTTGACCTAAGAAGCACGGA
CACACTCAGAGCGTGTCCGAATGAAAGAGATGCTTATCATGAAAGTCGGAGCAGGAGGCATAGGGGTACAAGCCCTGGTCGTAGAAGAAGCAGAAGTCGTAGTCCACGAG
GAAGGAAGAATCGAAATCCAGTTAGAGAAGGGAGTGAAGAGAGGCGTGCTAAAATTGAGCAGTGGAACAGGGAAAGAGAACAAGCAGCAAATGATAACAATGCCAATTCT
GGTAGCAACAAAAATAGCCATGAAAGAAGTTACAATGGTGATGTAAAGTATGCAAATCAGGCCTGTGGTTATGACTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAGCATTTGGCATCCATATTCGGGACGGAGAAGGACAGGGTTAACTGTCCCTTCTACTTCAAGATCGGGGCCTGCCGGCACGGTGATCGGTGTTCGCGGTTGCA
TACGAAGCCGAGCATAAGCCCCACCCTCTTGCTTTCTAATATGTATCAGAGACCCGACATGATTACTCCTGGTGTCGACGCGCAGGGGAATCCGATTGACCCTCGCGAGA
TTCAGGACCATTTTGAGGATTTCTATGAAGATTTATTCCAGGAACTGAGCAAGTACGGGGAGATTGAAAGTTTGAATGTTTGTGACAATCTAGCTGACCACATGGTGGGT
AATGTCTATGTTCAATTTCGAGAGGAAGAACAAGCTGCAAATGCTCTTCGGAATCTGAGTGGCAGATTTTATGCTGGACGTCCAATCATTGTTGACCTAAGAAGCACGGA
CACACTCAGAGCGTGTCCGAATGAAAGAGATGCTTATCATGAAAGTCGGAGCAGGAGGCATAGGGGTACAAGCCCTGGTCGTAGAAGAAGCAGAAGTCGTAGTCCACGAG
GAAGGAAGAATCGAAATCCAGTTAGAGAAGGGAGTGAAGAGAGGCGTGCTAAAATTGAGCAGTGGAACAGGGAAAGAGAACAAGCAGCAAATGATAACAATGCCAATTCT
GGTAGCAACAAAAATAGCCATGAAAGAAGTTACAATGGTGATGTAAAGTATGCAAATCAGGCCTGTGGTTATGACTTATGA
Protein sequenceShow/hide protein sequence
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPREIQDHFEDFYEDLFQELSKYGEIESLNVCDNLADHMVG
NVYVQFREEEQAANALRNLSGRFYAGRPIIVDLRSTDTLRACPNERDAYHESRSRRHRGTSPGRRRSRSRSPRGRKNRNPVREGSEERRAKIEQWNREREQAANDNNANS
GSNKNSHERSYNGDVKYANQACGYDL