; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg011333 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011333
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold8:11813498..11816465
RNA-Seq ExpressionSpg011333
SyntenySpg011333
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.0e-3057.04Show/hide
Query:  IQIENQHIAESKVDNYEKGEQRTFIFDRIKHSTTCPSVFQRMSMVAIEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSKFVFDLLKVTSDQPQRKMDNLE
        ++++N + +  +VDN  + +QRT +FDRIK  TT  SVFQR+SM   EEENQC  ST  R S F+RLS+STSKK RPS   FD LK+T+DQ QR+M +L+
Subjt:  IQIENQHIAESKVDNYEKGEQRTFIFDRIKHSTTCPSVFQRMSMVAIEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSKFVFDLLKVTSDQPQRKMDNLE

Query:  VKLFDEVNNDKKLHSSIPSRMKRKFSILINTEGSL
         K F E N+D K+HS +PSRMKRK S+ INTEGSL
Subjt:  VKLFDEVNNDKKLHSSIPSRMKRKFSILINTEGSL

KAA0051327.1 Retrotransposon gag protein [Cucumis melo var. makuwa]4.6e-3048.22Show/hide
Query:  IQIENQHIAESKVDNYEKGEQRTFIFDRIKHSTTCPSVFQRMSMVAIEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSKFVFDLLKVTSDQPQRKMDNLE
        +++ N +++  +V+N  + +QRT +FDRIK STT  SVFQR+SM   EEENQC  STSTR S F+RL++STSKK RPS  +FD LK+T+DQ QR+M  L+
Subjt:  IQIENQHIAESKVDNYEKGEQRTFIFDRIKHSTTCPSVFQRMSMVAIEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSKFVFDLLKVTSDQPQRKMDNLE

Query:  VKLFDEVNNDK-KLHSSIPSRMKRKFSILINTEGSLKFEGSHDLRWSS------FSPSSKVLTLFAGVPSPQVRRFSRASLQFLLSRFEGSHALCCS
         K+F E NND  K+HS + SRMKRK S+ I+TEGSL  +    +  +S       SP SK+LT          RR S   LQ   S    SH +CCS
Subjt:  VKLFDEVNNDK-KLHSSIPSRMKRKFSILINTEGSLKFEGSHDLRWSS------FSPSSKVLTLFAGVPSPQVRRFSRASLQFLLSRFEGSHALCCS

KAA0063700.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.0e-3055.56Show/hide
Query:  IQIENQHIAESKVDNYEKGEQRTFIFDRIKHSTTCPSVFQRMSMVAIEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSKFVFDLLKVTSDQPQRKMDNLE
        +++ N + +  +VDN  + ++R ++FDRIK  TT  SVFQR+S    EEENQC  ST TR S F+RLS+STSKK+RPS F FD +K+T+ Q QR+M +L+
Subjt:  IQIENQHIAESKVDNYEKGEQRTFIFDRIKHSTTCPSVFQRMSMVAIEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSKFVFDLLKVTSDQPQRKMDNLE

Query:  VKLFDEVNNDKKLHSSIPSRMKRKFSILINTEGSL
         KLF E N+D  +HS +PSRMKRK SI INTEGSL
Subjt:  VKLFDEVNNDKKLHSSIPSRMKRKFSILINTEGSL

KAA0063719.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.7e-3058.21Show/hide
Query:  QIENQHIAESKVDNYEKGEQRTFIFDRIKHSTTCPSVFQRMSMVAIEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSKFVFDLLKVTSDQPQRKMDNLEV
        +++N + +  +VDN  + +QRT +FDRIK  TT  SVFQR+SM   EEENQC  ST  R STF+RLS+STSKK RPS   FD LK+T+DQ QR+M  L+ 
Subjt:  QIENQHIAESKVDNYEKGEQRTFIFDRIKHSTTCPSVFQRMSMVAIEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSKFVFDLLKVTSDQPQRKMDNLEV

Query:  KLFDEVNNDKKLHSSIPSRMKRKFSILINTEGSL
        K F E N+D K+HS +PSRMKRK S+ INTEGSL
Subjt:  KLFDEVNNDKKLHSSIPSRMKRKFSILINTEGSL

KAA0065608.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.2e-3157.04Show/hide
Query:  IQIENQHIAESKVDNYEKGEQRTFIFDRIKHSTTCPSVFQRMSMVAIEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSKFVFDLLKVTSDQPQRKMDNLE
        ++++N + +  +VDN  + +QRTF+FDRIK  TT  SVFQR+SM   EEE QC  ST TR STF+RLS+STSKK RPS   FD LK+T+DQ Q++M +L+
Subjt:  IQIENQHIAESKVDNYEKGEQRTFIFDRIKHSTTCPSVFQRMSMVAIEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSKFVFDLLKVTSDQPQRKMDNLE

Query:  VKLFDEVNNDKKLHSSIPSRMKRKFSILINTEGSL
         K F E N D K+HS +PSR KRK S+ INTEGSL
Subjt:  VKLFDEVNNDKKLHSSIPSRMKRKFSILINTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7TQ06 Retrotransposon gag protein9.9e-3157.04Show/hide
Query:  IQIENQHIAESKVDNYEKGEQRTFIFDRIKHSTTCPSVFQRMSMVAIEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSKFVFDLLKVTSDQPQRKMDNLE
        ++++N + +  +VDN  + +QRT +FDRIK  TT  SVFQR+SM   EEENQC  ST  R S F+RLS+STSKK RPS   FD LK+T+DQ QR+M +L+
Subjt:  IQIENQHIAESKVDNYEKGEQRTFIFDRIKHSTTCPSVFQRMSMVAIEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSKFVFDLLKVTSDQPQRKMDNLE

Query:  VKLFDEVNNDKKLHSSIPSRMKRKFSILINTEGSL
         K F E N+D K+HS +PSRMKRK S+ INTEGSL
Subjt:  VKLFDEVNNDKKLHSSIPSRMKRKFSILINTEGSL

A0A5A7UA77 Retrotransposon gag protein2.2e-3048.22Show/hide
Query:  IQIENQHIAESKVDNYEKGEQRTFIFDRIKHSTTCPSVFQRMSMVAIEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSKFVFDLLKVTSDQPQRKMDNLE
        +++ N +++  +V+N  + +QRT +FDRIK STT  SVFQR+SM   EEENQC  STSTR S F+RL++STSKK RPS  +FD LK+T+DQ QR+M  L+
Subjt:  IQIENQHIAESKVDNYEKGEQRTFIFDRIKHSTTCPSVFQRMSMVAIEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSKFVFDLLKVTSDQPQRKMDNLE

Query:  VKLFDEVNNDK-KLHSSIPSRMKRKFSILINTEGSLKFEGSHDLRWSS------FSPSSKVLTLFAGVPSPQVRRFSRASLQFLLSRFEGSHALCCS
         K+F E NND  K+HS + SRMKRK S+ I+TEGSL  +    +  +S       SP SK+LT          RR S   LQ   S    SH +CCS
Subjt:  VKLFDEVNNDK-KLHSSIPSRMKRKFSILINTEGSLKFEGSHDLRWSS------FSPSSKVLTLFAGVPSPQVRRFSRASLQFLLSRFEGSHALCCS

A0A5A7V7A0 Retrotransposon gag protein2.9e-3056.3Show/hide
Query:  IQIENQHIAESKVDNYEKGEQRTFIFDRIKHSTTCPSVFQRMSMVAIEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSKFVFDLLKVTSDQPQRKMDNLE
        ++++N + +  +V+N  +  QRT +FDRIK STT  SVFQR+SM   EEENQC     TR STF+RLS+STSKK RPS  VFD LK+T DQ QR+M +L+
Subjt:  IQIENQHIAESKVDNYEKGEQRTFIFDRIKHSTTCPSVFQRMSMVAIEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSKFVFDLLKVTSDQPQRKMDNLE

Query:  VKLFDEVNNDKKLHSSIPSRMKRKFSILINTEGSL
         K F E N+D K+HS +PSRMKRK S+ INTEG++
Subjt:  VKLFDEVNNDKKLHSSIPSRMKRKFSILINTEGSL

A0A5A7VDY3 Ty3-gypsy retrotransposon protein1.3e-3058.21Show/hide
Query:  QIENQHIAESKVDNYEKGEQRTFIFDRIKHSTTCPSVFQRMSMVAIEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSKFVFDLLKVTSDQPQRKMDNLEV
        +++N + +  +VDN  + +QRT +FDRIK  TT  SVFQR+SM   EEENQC  ST  R STF+RLS+STSKK RPS   FD LK+T+DQ QR+M  L+ 
Subjt:  QIENQHIAESKVDNYEKGEQRTFIFDRIKHSTTCPSVFQRMSMVAIEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSKFVFDLLKVTSDQPQRKMDNLEV

Query:  KLFDEVNNDKKLHSSIPSRMKRKFSILINTEGSL
        K F E N+D K+HS +PSRMKRK S+ INTEGSL
Subjt:  KLFDEVNNDKKLHSSIPSRMKRKFSILINTEGSL

A0A5D3CA53 Retrotransposon gag protein4.4e-3157.04Show/hide
Query:  IQIENQHIAESKVDNYEKGEQRTFIFDRIKHSTTCPSVFQRMSMVAIEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSKFVFDLLKVTSDQPQRKMDNLE
        ++++N + +  +VDN  + +QRTF+FDRIK  TT  SVFQR+SM   EEE QC  ST TR STF+RLS+STSKK RPS   FD LK+T+DQ Q++M +L+
Subjt:  IQIENQHIAESKVDNYEKGEQRTFIFDRIKHSTTCPSVFQRMSMVAIEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSKFVFDLLKVTSDQPQRKMDNLE

Query:  VKLFDEVNNDKKLHSSIPSRMKRKFSILINTEGSL
         K F E N D K+HS +PSR KRK S+ INTEGSL
Subjt:  VKLFDEVNNDKKLHSSIPSRMKRKFSILINTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTACTGCCCACTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGCCAAGAAACAACATTGCATGGGGCATATACCAATGACAA
GTTGTTTGTTAAGTATAACCCTTTGTTTGAACCTGATTTTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAAAATGACTGAGATGCAGGGGCACA
TCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCACCTAAAGATTCAAATTGAGAACCAACATATCGCTGAATCAAAAGTTGACAATTATGAGAAG
GGTGAACAAAGGACTTTCATCTTTGATCGCATCAAGCATTCAACTACTTGTCCTTCAGTATTCCAAAGAATGAGTATGGTCGCGATAGAAGAAGAAAATCAATGTTCAGT
GTCCACCTCCACTAGACCTTCAACTTTCCAAAGGCTAAGTGTTTCCACATCGAAGAAAAGTCGACCTTCAAAATTTGTTTTTGATCTCCTCAAAGTAACAAGCGATCAAC
CTCAAAGAAAGATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAACGATAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTATTCTC
ATAAATACAGAAGGTTCCTTGAAGTTCGAAGGTTCTCACGATCTTCGTTGGAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCTCTTCGCTGGAGTTCCTTCTCCCCA
AGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCCAGGTTCGAAGGTTCTCACGCGCTTTGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGTT
TCGATGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCACAGGTGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCCA
AGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCTAACTTTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTTTCAGAGTTCGAAGGTTCTCACGCGTT
TCGCTGCAATTCCTTCTCTCCAAGTTTGAGGGTTCACGCGGCGCTGCTTCATTGTTCCTTCTCCAAGTTTGAAGGTTCTCACGCGATTCGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCTACTGCCCACTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGCCAAGAAACAACATTGCATGGGGCATATACCAATGACAA
GTTGTTTGTTAAGTATAACCCTTTGTTTGAACCTGATTTTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAAAATGACTGAGATGCAGGGGCACA
TCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCACCTAAAGATTCAAATTGAGAACCAACATATCGCTGAATCAAAAGTTGACAATTATGAGAAG
GGTGAACAAAGGACTTTCATCTTTGATCGCATCAAGCATTCAACTACTTGTCCTTCAGTATTCCAAAGAATGAGTATGGTCGCGATAGAAGAAGAAAATCAATGTTCAGT
GTCCACCTCCACTAGACCTTCAACTTTCCAAAGGCTAAGTGTTTCCACATCGAAGAAAAGTCGACCTTCAAAATTTGTTTTTGATCTCCTCAAAGTAACAAGCGATCAAC
CTCAAAGAAAGATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAACGATAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTATTCTC
ATAAATACAGAAGGTTCCTTGAAGTTCGAAGGTTCTCACGATCTTCGTTGGAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCTCTTCGCTGGAGTTCCTTCTCCCCA
AGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCCAGGTTCGAAGGTTCTCACGCGCTTTGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGTT
TCGATGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCACAGGTGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCCA
AGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCTAACTTTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTTTCAGAGTTCGAAGGTTCTCACGCGTT
TCGCTGCAATTCCTTCTCTCCAAGTTTGAGGGTTCACGCGGCGCTGCTTCATTGTTCCTTCTCCAAGTTTGAAGGTTCTCACGCGATTCGCTAG
Protein sequenceShow/hide protein sequence
MGSTAHCCFNELTLQEDKASIVAGQETTLHGAYTNDKLFVKYNPLFEPDFDVVTVMMTETRTMEEKMTEMQGHINTLMKAIEEKDSQIEHLKIQIENQHIAESKVDNYEK
GEQRTFIFDRIKHSTTCPSVFQRMSMVAIEEENQCSVSTSTRPSTFQRLSVSTSKKSRPSKFVFDLLKVTSDQPQRKMDNLEVKLFDEVNNDKKLHSSIPSRMKRKFSIL
INTEGSLKFEGSHDLRWSSFSPSSKVLTLFAGVPSPQVRRFSRASLQFLLSRFEGSHALCCSSFSPSSKVLTRFDAVPSLQVRRFTGASLQFLLPKFEGSHALRCSSFSP
SSKVLTRFVAVLTFQVRRFSRASLQFLLSEFEGSHAFRCNSFSPSLRVHAALLHCSFSKFEGSHAIR