; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg011343 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011343
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold8:10210218..10214283
RNA-Seq ExpressionSpg011343
SyntenySpg011343
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]3.6e-3358.08Show/hide
Query:  VYKLNQKLYLV-SCRV--FENEELDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS--------
        ++K NQKLYLV   R+   EN +  +PRGNR SLQT ELDKT             PLSTLSVLRDN+ V  IELPVPD LPTSAESS S+SS        
Subjt:  VYKLNQKLYLV-SCRV--FENEELDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS--------

Query:  --------YFPNQVMSGLHHVYVERFNISVGSTGIVRGDDVSWPHVVFRAKLAGGPGGGVTTWYQSS
                 F NQVMS LH V    FN+SVGSTGIVRGDDV W H VFRAK  GGPGGGVTTW  S+
Subjt:  --------YFPNQVMSGLHHVYVERFNISVGSTGIVRGDDVSWPHVVFRAKLAGGPGGGVTTWYQSS

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]9.3e-3460.62Show/hide
Query:  VYKLNQKLYLVSCRVFENEELDVP-RGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------
        V+K NQKLYL      ++ + DV  RGNRSSLQ+GELD T             PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SS          
Subjt:  VYKLNQKLYLVSCRVFENEELDVP-RGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------

Query:  ------YFPNQVMSGLHHVYVERFNISVGSTGIVRGDDVSWPHVVFRAKLAGGPGGGVTT
              YF NQVMS LH V    F++ VGSTGIVRGDDV W H VFRAK  GGPGGGVTT
Subjt:  ------YFPNQVMSGLHHVYVERFNISVGSTGIVRGDDVSWPHVVFRAKLAGGPGGGVTT

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.9e-3667.61Show/hide
Query:  VYKLNQKLYLVSCRVFENEELDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLH
        V K NQKLYL      E+ +   PRGN+ SLQTGELDKT             PLST SVL DNDAVVEIEL VPDTLPTSAES  S+SSYF NQVMSGLH
Subjt:  VYKLNQKLYLVSCRVFENEELDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLH

Query:  HVYVERFNISVGSTGIVRGDDVSWPHVVFRAKLAGGPGGGVT
         V    FN+SVGSTGIVRGDDV   HVVFRAK AGGPGGGVT
Subjt:  HVYVERFNISVGSTGIVRGDDVSWPHVVFRAKLAGGPGGGVT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]7.9e-3358.54Show/hide
Query:  VYKLNQKLYLVSCRVFENEELDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS-----------
        ++KLNQKLYL             PRGNR SLQTGELDKT              LSTLSVLRDN+AV  IELPVPDTLPTSAESS S+SS           
Subjt:  VYKLNQKLYLVSCRVFENEELDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS-----------

Query:  -----YFPNQVMSGLHHVYVERFNISVGSTGIVRGDDVSWPHVVFRAKLAGGPGGGVTTWYQSS
              F NQVMS LH V    FN+SVGSTGIVRGDDV W H VFRAK  GGPGGGVTTW  S+
Subjt:  -----YFPNQVMSGLHHVYVERFNISVGSTGIVRGDDVSWPHVVFRAKLAGGPGGGVTTWYQSS

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]9.3e-3460.62Show/hide
Query:  VYKLNQKLYLVSCRVFENEELDVP-RGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------
        V+K NQKLYL      ++ + DV  RGNRSSLQ+GELD T             PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SS          
Subjt:  VYKLNQKLYLVSCRVFENEELDVP-RGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------

Query:  ------YFPNQVMSGLHHVYVERFNISVGSTGIVRGDDVSWPHVVFRAKLAGGPGGGVTT
              YF NQVMS LH V    F++ VGSTGIVRGDDV W H VFRAK  GGPGGGVTT
Subjt:  ------YFPNQVMSGLHHVYVERFNISVGSTGIVRGDDVSWPHVVFRAKLAGGPGGGVTT

TrEMBL top hitse value%identityAlignment
A0A5A7UT17 CCHC-type domain-containing protein1.7e-3358.08Show/hide
Query:  VYKLNQKLYLV-SCRV--FENEELDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS--------
        ++K NQKLYLV   R+   EN +  +PRGNR SLQT ELDKT             PLSTLSVLRDN+ V  IELPVPD LPTSAESS S+SS        
Subjt:  VYKLNQKLYLV-SCRV--FENEELDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS--------

Query:  --------YFPNQVMSGLHHVYVERFNISVGSTGIVRGDDVSWPHVVFRAKLAGGPGGGVTTWYQSS
                 F NQVMS LH V    FN+SVGSTGIVRGDDV W H VFRAK  GGPGGGVTTW  S+
Subjt:  --------YFPNQVMSGLHHVYVERFNISVGSTGIVRGDDVSWPHVVFRAKLAGGPGGGVTTWYQSS

A0A5A7V9N3 Reverse transcriptase4.5e-3460.62Show/hide
Query:  VYKLNQKLYLVSCRVFENEELDVP-RGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------
        V+K NQKLYL      ++ + DV  RGNRSSLQ+GELD T             PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SS          
Subjt:  VYKLNQKLYLVSCRVFENEELDVP-RGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------

Query:  ------YFPNQVMSGLHHVYVERFNISVGSTGIVRGDDVSWPHVVFRAKLAGGPGGGVTT
              YF NQVMS LH V    F++ VGSTGIVRGDDV W H VFRAK  GGPGGGVTT
Subjt:  ------YFPNQVMSGLHHVYVERFNISVGSTGIVRGDDVSWPHVVFRAKLAGGPGGGVTT

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein2.8e-3667.61Show/hide
Query:  VYKLNQKLYLVSCRVFENEELDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLH
        V K NQKLYL      E+ +   PRGN+ SLQTGELDKT             PLST SVL DNDAVVEIEL VPDTLPTSAES  S+SSYF NQVMSGLH
Subjt:  VYKLNQKLYLVSCRVFENEELDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLH

Query:  HVYVERFNISVGSTGIVRGDDVSWPHVVFRAKLAGGPGGGVT
         V    FN+SVGSTGIVRGDDV   HVVFRAK AGGPGGGVT
Subjt:  HVYVERFNISVGSTGIVRGDDVSWPHVVFRAKLAGGPGGGVT

A0A5D3CJX3 CCHC-type domain-containing protein3.8e-3358.54Show/hide
Query:  VYKLNQKLYLVSCRVFENEELDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS-----------
        ++KLNQKLYL             PRGNR SLQTGELDKT              LSTLSVLRDN+AV  IELPVPDTLPTSAESS S+SS           
Subjt:  VYKLNQKLYLVSCRVFENEELDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS-----------

Query:  -----YFPNQVMSGLHHVYVERFNISVGSTGIVRGDDVSWPHVVFRAKLAGGPGGGVTTWYQSS
              F NQVMS LH V    FN+SVGSTGIVRGDDV W H VFRAK  GGPGGGVTTW  S+
Subjt:  -----YFPNQVMSGLHHVYVERFNISVGSTGIVRGDDVSWPHVVFRAKLAGGPGGGVTTWYQSS

A0A5D3DSY7 Putative Retrotransposon protein4.5e-3460.62Show/hide
Query:  VYKLNQKLYLVSCRVFENEELDVP-RGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------
        V+K NQKLYL      ++ + DV  RGNRSSLQ+GELD T             PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SS          
Subjt:  VYKLNQKLYLVSCRVFENEELDVP-RGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS----------

Query:  ------YFPNQVMSGLHHVYVERFNISVGSTGIVRGDDVSWPHVVFRAKLAGGPGGGVTT
              YF NQVMS LH V    F++ VGSTGIVRGDDV W H VFRAK  GGPGGGVTT
Subjt:  ------YFPNQVMSGLHHVYVERFNISVGSTGIVRGDDVSWPHVVFRAKLAGGPGGGVTT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAGAGGAGAAGAATTGGAGAGAGTTAGCACCGATCAAGAACATGTTTGTGAGGAAGAAATAGAGATTGAGCTTGTAGTGTCAGAGGAAGTTCAGGAGGTAGAGGT
TGAGGTTGAAAAGCCTTCGTCTGTTTTACCTTCTCCATCCTTTGTAGAATATGACTGTTCCTTTTTCTATTCTCACGACTCATTTCTCATCATTTTTCCATCCACATCTT
CAGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAAGATGTTCGTGGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTAAGTTGT
AGAGTGTTCGAAAATGAAGAGTTGGATGTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGG
TTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAA
GCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACATTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCAGT
TGGCCTCACGTCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATAGAGGAGAAGAATTGGAGAGAGTTAGCACCGATCAAGAACATGTTTGTGAGGAAGAAATAGAGATTGAGCTTGTAGTGTCAGAGGAAGTTCAGGAGGTAGAGGT
TGAGGTTGAAAAGCCTTCGTCTGTTTTACCTTCTCCATCCTTTGTAGAATATGACTGTTCCTTTTTCTATTCTCACGACTCATTTCTCATCATTTTTCCATCCACATCTT
CAGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAAGATGTTCGTGGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTAAGTTGT
AGAGTGTTCGAAAATGAAGAGTTGGATGTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGG
TTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAA
GCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACATTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCAGT
TGGCCTCACGTCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
MNRGEELERVSTDQEHVCEEEIEIELVVSEEVQEVEVEVEKPSSVLPSPSFVEYDCSFFYSHDSFLIIFPSTSSEHLRERVKEEEEEEDVRGFEHSGVYKLNQKLYLVSC
RVFENEELDVPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNISVGSTGIVRGDDVS
WPHVVFRAKLAGGPGGGVTTWYQSS