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Spg011354 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011354
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold8:10536401..10541533
RNA-Seq ExpressionSpg011354
SyntenySpg011354
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]3.9e-0645.05Show/hide
Query:  VEIELPVPDKLPKSAKSS-----------------QIKFQFIFQTELSQGCTSCST-VQQGQQVSLEEDDVCWLHAISRTKLAGSSGGGVT
        VEIELPVPD LP SA+SS                 ++ ++ I QT+  QGC   S  + +G       DDVCWLHAI R K AG  GGGVT
Subjt:  VEIELPVPDKLPKSAKSS-----------------QIKFQFIFQTELSQGCTSCST-VQQGQQVSLEEDDVCWLHAISRTKLAGSSGGGVT

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-0440.86Show/hide
Query:  RELAKAVEIELPVPDKLPKSAKS----SQIKFQFIFQT-ELSQGCTSCSTVQQGQQVSL--------EEDDVCWLHAISRTKLAGSSGGGVTF
        R+    VEIELPVPD LP SA+S    S    +  F++  +   C   +    G  + L          DDVCWLHA+ R K AG  GGGVTF
Subjt:  RELAKAVEIELPVPDKLPKSAKS----SQIKFQFIFQT-ELSQGCTSCSTVQQGQQVSL--------EEDDVCWLHAISRTKLAGSSGGGVTF

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.6e-0538.71Show/hide
Query:  RELAKAVEIELPVPDKLPKSAKSS--------QIKFQFI-------FQTELSQGCTSCSTVQQGQQVSLEEDDVCWLHAISRTKLAGSSGGGV
        R+    VEIELPVPD LP SA+SS        ++ F+F+       F  ++  G      V  G    +  D+VCWLHA+   K AG  GGGV
Subjt:  RELAKAVEIELPVPDKLPKSAKSS--------QIKFQFI-------FQTELSQGCTSCSTVQQGQQVSLEEDDVCWLHAISRTKLAGSSGGGV

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]3.9e-0645.05Show/hide
Query:  VEIELPVPDKLPKSAKSS-----------------QIKFQFIFQTELSQGCTSCST-VQQGQQVSLEEDDVCWLHAISRTKLAGSSGGGVT
        VEIELPVPD LP SA+SS                 ++ ++ I QT+  QGC   S  + +G       DDVCWLHAI R K AG  GGGVT
Subjt:  VEIELPVPDKLPKSAKSS-----------------QIKFQFIFQTELSQGCTSCST-VQQGQQVSLEEDDVCWLHAISRTKLAGSSGGGVT

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]4.3e-0540.43Show/hide
Query:  KAVEIELPVPDKLPKSAKSS--------QIKFQFIFQ-TELSQGCTSCSTVQQGQQVSLEEDDVCWLHAISRTKLAGSSGGGVTFSSLDLYGEI
        +++EIEL VPD LP SA+SS        +  F+  ++ +++      C  V+    V   E+DVCWLHA+ R K+AG SGGGVT  S   YG +
Subjt:  KAVEIELPVPDKLPKSAKSS--------QIKFQFIFQ-TELSQGCTSCSTVQQGQQVSLEEDDVCWLHAISRTKLAGSSGGGVTFSSLDLYGEI

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase1.9e-0645.05Show/hide
Query:  VEIELPVPDKLPKSAKSS-----------------QIKFQFIFQTELSQGCTSCST-VQQGQQVSLEEDDVCWLHAISRTKLAGSSGGGVT
        VEIELPVPD LP SA+SS                 ++ ++ I QT+  QGC   S  + +G       DDVCWLHAI R K AG  GGGVT
Subjt:  VEIELPVPDKLPKSAKSS-----------------QIKFQFIFQTELSQGCTSCST-VQQGQQVSLEEDDVCWLHAISRTKLAGSSGGGVT

A0A5A7T9P7 Gag/pol protein7.9e-0540.66Show/hide
Query:  RELAKAVEIELPVPDKLPKSAKSS--------QIKFQFIFQTEL----SQGCTSCSTVQQGQQVSLEEDDVCWLHAISRTKLAGSSGGGVT
        R+    VEIELP+PD LP SA+SS        ++ F+ +    L    S    +     +G    +  DDVCWLHAI R K AG  GGGVT
Subjt:  RELAKAVEIELPVPDKLPKSAKSS--------QIKFQFIFQTEL----SQGCTSCSTVQQGQQVSLEEDDVCWLHAISRTKLAGSSGGGVT

A0A5A7VIY9 Uncharacterized protein7.9e-0541.18Show/hide
Query:  VEIELPVPDKLPKSAKS--------SQIKFQFIFQTEL----SQGCTSCSTVQQGQQVSLEEDDVCWLHAISRTKLAGSSGGGVT
        VEIELPVPD LP SA+S         ++ F+F+    L    S    +     +G    +  DDVCWLH + R K+AG  GGGVT
Subjt:  VEIELPVPDKLPKSAKS--------SQIKFQFIFQTEL----SQGCTSCSTVQQGQQVSLEEDDVCWLHAISRTKLAGSSGGGVT

A0A5D3BTP3 Reverse transcriptase1.9e-0645.05Show/hide
Query:  VEIELPVPDKLPKSAKSS-----------------QIKFQFIFQTELSQGCTSCST-VQQGQQVSLEEDDVCWLHAISRTKLAGSSGGGVT
        VEIELPVPD LP SA+SS                 ++ ++ I QT+  QGC   S  + +G       DDVCWLHAI R K AG  GGGVT
Subjt:  VEIELPVPDKLPKSAKSS-----------------QIKFQFIFQTELSQGCTSCST-VQQGQQVSLEEDDVCWLHAISRTKLAGSSGGGVT

A0A5D3CAC6 Uncharacterized protein2.1e-0540.43Show/hide
Query:  KAVEIELPVPDKLPKSAKSS--------QIKFQFIFQ-TELSQGCTSCSTVQQGQQVSLEEDDVCWLHAISRTKLAGSSGGGVTFSSLDLYGEI
        +++EIEL VPD LP SA+SS        +  F+  ++ +++      C  V+    V   E+DVCWLHA+ R K+AG SGGGVT  S   YG +
Subjt:  KAVEIELPVPDKLPKSAKSS--------QIKFQFIFQ-TELSQGCTSCSTVQQGQQVSLEEDDVCWLHAISRTKLAGSSGGGVTFSSLDLYGEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCTAGGGAACTAGCCAAGGCTGTAGAGATCGAGCTCCCGGTGCCTGATAAACTGCCAAAGTCTGCTAAAAGCTCCCAGATCAAGTTCCAGTTTATTTTCCAAACTGAGTT
AAGTCAGGGTTGCACGTCATGTTCAACTGTTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCGGACTAAGCTAGCAGGTA
GTTCGGGAGGGGGCGTGACATTTTCATCCTTGGATTTGTATGGTGAAATTCTTTTCCCAAAATTCAAGATCACCAAGTCTCACAACTTGGTTCCTAGTCTTAAAGATATA
GCAGTGGAAGATCTCGGTGCTAGTGTCCCTACTGTGATCATACTATTCTTGGTGGGAGATTTGATTATTGAAGCTAAATTAAAGAAAATGGAGTTGATCAGTCACGCTGT
TCTCCATGGATTCGATAGTCTGTTATATTTATCATTTTATATTACTTGTGGCCCGTGCACTTTGCGGTCCATCACTGAAGCAAGGTCAAGGAGAGGGATTGAAGCTAGAA
CGCATGGAGATCTTGACGAGAACGTGCGGTTTCGACGAATCTAG
mRNA sequenceShow/hide mRNA sequence
GCTAGGGAACTAGCCAAGGCTGTAGAGATCGAGCTCCCGGTGCCTGATAAACTGCCAAAGTCTGCTAAAAGCTCCCAGATCAAGTTCCAGTTTATTTTCCAAACTGAGTT
AAGTCAGGGTTGCACGTCATGTTCAACTGTTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCGGACTAAGCTAGCAGGTA
GTTCGGGAGGGGGCGTGACATTTTCATCCTTGGATTTGTATGGTGAAATTCTTTTCCCAAAATTCAAGATCACCAAGTCTCACAACTTGGTTCCTAGTCTTAAAGATATA
GCAGTGGAAGATCTCGGTGCTAGTGTCCCTACTGTGATCATACTATTCTTGGTGGGAGATTTGATTATTGAAGCTAAATTAAAGAAAATGGAGTTGATCAGTCACGCTGT
TCTCCATGGATTCGATAGTCTGTTATATTTATCATTTTATATTACTTGTGGCCCGTGCACTTTGCGGTCCATCACTGAAGCAAGGTCAAGGAGAGGGATTGAAGCTAGAA
CGCATGGAGATCTTGACGAGAACGTGCGGTTTCGACGAATCTAG
Protein sequenceShow/hide protein sequence
ARELAKAVEIELPVPDKLPKSAKSSQIKFQFIFQTELSQGCTSCSTVQQGQQVSLEEDDVCWLHAISRTKLAGSSGGGVTFSSLDLYGEILFPKFKITKSHNLVPSLKDI
AVEDLGASVPTVIILFLVGDLIIEAKLKKMELISHAVLHGFDSLLYLSFYITCGPCTLRSITEARSRRGIEARTHGDLDENVRFRRI