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Spg011396 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011396
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Genome locationscaffold8:10371011..10372741
RNA-Seq ExpressionSpg011396
SyntenySpg011396
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.7e-0530.56Show/hide
Query:  LVIFRLLEPTKSLALEASPVNCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEALAIVEGLNKLTSNLSIIRDGFMPPLVVKSD
        L + R +E       +    N WK+N ++ W   + T GIGW +RD  G ++   C+  +    I +LE +AI EGL         IR     P+ ++SD
Subjt:  LVIFRLLEPTKSLALEASPVNCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEALAIVEGLNKLTSNLSIIRDGFMPPLVVKSD

Query:  SSDVIEEL
        S + I  L
Subjt:  SSDVIEEL

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]5.4e-0736.63Show/hide
Query:  NCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEALAIVEGLNKLTSNLSIIRDGFMPPLVVKSDSSDVIEELIIGAKLEKLELI
        N WK+N D+ W   + T GIGW +RD  G ++  GC+  +    I +LE +AI EGL         IR     P+ ++SDS + I  L    K+ KL+L 
Subjt:  NCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEALAIVEGLNKLTSNLSIIRDGFMPPLVVKSDSSDVIEELIIGAKLEKLELI

Query:  G
        G
Subjt:  G

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]5.4e-0736.63Show/hide
Query:  NCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEALAIVEGLNKLTSNLSIIRDGFMPPLVVKSDSSDVIEELIIGAKLEKLELI
        N WK+N D+ W   + T GIGW +RD  G ++  GC+  +    I +LE +AI EGL         IR     P+ ++SDS + I  L    K+ KL+L 
Subjt:  NCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEALAIVEGLNKLTSNLSIIRDGFMPPLVVKSDSSDVIEELIIGAKLEKLELI

Query:  G
        G
Subjt:  G

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.9e-0838.53Show/hide
Query:  LALEASPVNCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEALAIVEGLNKLTSNLSIIRDGFMPPLVVKSDSSDVIEELIIGA
        L  E  P++ W +N D++W DS+   GIGW IR   G +V  G +  +  + +K LEA AI+EGL  LT NL ++R     PL +++DS++V  E ++  
Subjt:  LALEASPVNCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEALAIVEGLNKLTSNLSIIRDGFMPPLVVKSDSSDVIEELIIGA

Query:  KLEKLELIG
        K E L   G
Subjt:  KLEKLELIG

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.3e-0533.71Show/hide
Query:  NCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEALAIVEGLNKL-TSNLSIIRDGFMPPLVVKSDSSDVIEEL
        N WK+N D+ W   + T GIGW +RD  G ++   C+  +    I +LE +AI EGL  +   +   I+     P+ ++SDS + I  L
Subjt:  NCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEALAIVEGLNKL-TSNLSIIRDGFMPPLVVKSDSSDVIEEL

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134128.4e-0630.56Show/hide
Query:  LVIFRLLEPTKSLALEASPVNCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEALAIVEGLNKLTSNLSIIRDGFMPPLVVKSD
        L + R +E       +    N WK+N ++ W   + T GIGW +RD  G ++   C+  +    I +LE +AI EGL         IR     P+ ++SD
Subjt:  LVIFRLLEPTKSLALEASPVNCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEALAIVEGLNKLTSNLSIIRDGFMPPLVVKSD

Query:  SSDVIEEL
        S + I  L
Subjt:  SSDVIEEL

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X12.6e-0736.63Show/hide
Query:  NCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEALAIVEGLNKLTSNLSIIRDGFMPPLVVKSDSSDVIEELIIGAKLEKLELI
        N WK+N D+ W   + T GIGW +RD  G ++  GC+  +    I +LE +AI EGL         IR     P+ ++SDS + I  L    K+ KL+L 
Subjt:  NCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEALAIVEGLNKLTSNLSIIRDGFMPPLVVKSDSSDVIEELIIGAKLEKLELI

Query:  G
        G
Subjt:  G

A0A6J1DNV9 uncharacterized protein LOC1110224031.4e-0838.53Show/hide
Query:  LALEASPVNCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEALAIVEGLNKLTSNLSIIRDGFMPPLVVKSDSSDVIEELIIGA
        L  E  P++ W +N D++W DS+   GIGW IR   G +V  G +  +  + +K LEA AI+EGL  LT NL ++R     PL +++DS++V  E ++  
Subjt:  LALEASPVNCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEALAIVEGLNKLTSNLSIIRDGFMPPLVVKSDSSDVIEELIIGA

Query:  KLEKLELIG
        K E L   G
Subjt:  KLEKLELIG

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X22.6e-0736.63Show/hide
Query:  NCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEALAIVEGLNKLTSNLSIIRDGFMPPLVVKSDSSDVIEELIIGAKLEKLELI
        N WK+N D+ W   + T GIGW +RD  G ++  GC+  +    I +LE +AI EGL         IR     P+ ++SDS + I  L    K+ KL+L 
Subjt:  NCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEALAIVEGLNKLTSNLSIIRDGFMPPLVVKSDSSDVIEELIIGAKLEKLELI

Query:  G
        G
Subjt:  G

A0A6J1DSV1 uncharacterized protein LOC1110236086.4e-0633.71Show/hide
Query:  NCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEALAIVEGLNKL-TSNLSIIRDGFMPPLVVKSDSSDVIEEL
        N WK+N D+ W   + T GIGW +RD  G ++   C+  +    I +LE +AI EGL  +   +   I+     P+ ++SDS + I  L
Subjt:  NCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEALAIVEGLNKL-TSNLSIIRDGFMPPLVVKSDSSDVIEEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAAACTGCGTCGGCCTATACAGTAATTCCGACGCTAGAAAGTAGGCGTCGGGAACGTAAAGAATTCCCCAGCGGCCATTTTTTGACGTCGGTAGTTGGCATAAC
TCCAGACGCCAACCTTAATAGGCGTCGGGAGTTATGCCCCTTTGCAAACCCAGCCCCTTCTCTGTTCTCACCGTCCGTCCGTCCCTTTTCAGTGCCACCAGTTTCAAATC
TCGCTACCGGCTACAGTGTCGCCACCGTCCGTCAAGCTTGCTGCCGTTTTTTAGTTATTTTTCGCCTACTAGAACCAACGAAGTCACTTGCATTGGAAGCCTCGCCAGTC
AATTGTTGGAAAATCAATTTTGATTCCACGTGGTACGATTCCTCTAAAACAAGAGGGATTGGGTGGGCAATCCGTGACTCCCTGGGTTCTTTAGTCGGAGTTGGTTGCAA
AAGAACGAAGAATGTTAGTGAGATTAAATGGTTGGAAGCGTTAGCCATTGTCGAAGGTCTCAATAAGCTTACCAGTAATTTAAGCATCATCAGAGATGGATTCATGCCAC
CACTGGTTGTAAAATCGGACTCCAGCGACGTCATTGAGGAATTGATTATTGGAGCTAAATTAGAGAAATTGGAGTTGATCGGGTGCTCGGGACCTAAAGATAAGCAAAAG
AAGCGAAAAAAACTCAAATTGGAGGCTTACAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAAAACTGCGTCGGCCTATACAGTAATTCCGACGCTAGAAAGTAGGCGTCGGGAACGTAAAGAATTCCCCAGCGGCCATTTTTTGACGTCGGTAGTTGGCATAAC
TCCAGACGCCAACCTTAATAGGCGTCGGGAGTTATGCCCCTTTGCAAACCCAGCCCCTTCTCTGTTCTCACCGTCCGTCCGTCCCTTTTCAGTGCCACCAGTTTCAAATC
TCGCTACCGGCTACAGTGTCGCCACCGTCCGTCAAGCTTGCTGCCGTTTTTTAGTTATTTTTCGCCTACTAGAACCAACGAAGTCACTTGCATTGGAAGCCTCGCCAGTC
AATTGTTGGAAAATCAATTTTGATTCCACGTGGTACGATTCCTCTAAAACAAGAGGGATTGGGTGGGCAATCCGTGACTCCCTGGGTTCTTTAGTCGGAGTTGGTTGCAA
AAGAACGAAGAATGTTAGTGAGATTAAATGGTTGGAAGCGTTAGCCATTGTCGAAGGTCTCAATAAGCTTACCAGTAATTTAAGCATCATCAGAGATGGATTCATGCCAC
CACTGGTTGTAAAATCGGACTCCAGCGACGTCATTGAGGAATTGATTATTGGAGCTAAATTAGAGAAATTGGAGTTGATCGGGTGCTCGGGACCTAAAGATAAGCAAAAG
AAGCGAAAAAAACTCAAATTGGAGGCTTACAAATGA
Protein sequenceShow/hide protein sequence
MGKTASAYTVIPTLESRRRERKEFPSGHFLTSVVGITPDANLNRRRELCPFANPAPSLFSPSVRPFSVPPVSNLATGYSVATVRQACCRFLVIFRLLEPTKSLALEASPV
NCWKINFDSTWYDSSKTRGIGWAIRDSLGSLVGVGCKRTKNVSEIKWLEALAIVEGLNKLTSNLSIIRDGFMPPLVVKSDSSDVIEELIIGAKLEKLELIGCSGPKDKQK
KRKKLKLEAYK