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Spg011415 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011415
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold8:11951727..11957398
RNA-Seq ExpressionSpg011415
SyntenySpg011415
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4279811.1 unnamed protein product [Prunus armeniaca]3.9e-0437.97Show/hide
Query:  LSCDAAWLNDAGVADLGWVLRDHGGDAIGATCEPVMGLLGVVMLEMQAIRAGLLAIGEMGIPRLVVGSDCLAVINLLNG
        ++CDAAW++   +  +GWV+RD  G  + A C+  M     + +E +AIR  LLA  + G+ +L V SD L +I +L G
Subjt:  LSCDAAWLNDAGVADLGWVLRDHGGDAIGATCEPVMGLLGVVMLEMQAIRAGLLAIGEMGIPRLVVGSDCLAVINLLNG

KAF4355486.1 hypothetical protein F8388_015240 [Cannabis sativa]3.9e-0437.65Show/hide
Query:  LSCDAAWLNDAGVADLGWVLRDHGGDAIGATCEPVMGLLGVVMLEMQAIRAGLLAIGEMGIPRLVVGSDCLAVINLLNGVEENFS
        ++ DA+ +  +    L  V+RDH GD I A    ++GL+ V + E+ AIR G+       IP+++V SDCL VIN LN      S
Subjt:  LSCDAAWLNDAGVADLGWVLRDHGGDAIGATCEPVMGLLGVVMLEMQAIRAGLLAIGEMGIPRLVVGSDCLAVINLLNGVEENFS

KAG2635966.1 hypothetical protein PVAP13_2NG409203 [Panicum virgatum]8.8e-0434.18Show/hide
Query:  LSCDAAWLNDAGVADLGWVLRDHGGDAIGATCEPVMGLLGVVMLEMQAIRAGLLAIGEMGIPRLVVGSDCLAVINLLNG
        L+ DA++ +D G    G +LRD  G  + A+C  +  L+   M E  A++ GL+    +G  RL+V SDC+ V++++ G
Subjt:  LSCDAAWLNDAGVADLGWVLRDHGGDAIGATCEPVMGLLGVVMLEMQAIRAGLLAIGEMGIPRLVVGSDCLAVINLLNG

XP_022558126.1 uncharacterized protein LOC106378161 [Brassica napus]5.1e-0429.35Show/hide
Query:  DAAWLNDAGVADLGWVLRDHGGDAIGATCEPVMGLLGVVMLEMQAIRAGLLAIGEMGIPRLVVGSDCLAVINLLNGVEENFSLVCTVAKESS
        D +W  + GV  +GW+LRDH G  + A  + +  +   +  E +AIR  +  +   G  R+ +  D L ++N+LNG EE + ++  + ++ S
Subjt:  DAAWLNDAGVADLGWVLRDHGGDAIGATCEPVMGLLGVVMLEMQAIRAGLLAIGEMGIPRLVVGSDCLAVINLLNGVEENFSLVCTVAKESS

TrEMBL top hitse value%identityAlignment
A0A2I4DVZ3 uncharacterized protein LOC1089839717.2e-0436.47Show/hide
Query:  LSCDAAWLNDAGVADLGWVLRDHGGDAIGATCEPVMGLLGVVMLEMQAIRAGLLAIGEMGIPRLVVGSDCLAVINLLNGVEENFS
        L+ D A   D   A +G VLRD  G  + A  +    +   V +E+ A+  GL     +GIP LVV +DCL+++  L G +E+FS
Subjt:  LSCDAAWLNDAGVADLGWVLRDHGGDAIGATCEPVMGLLGVVMLEMQAIRAGLLAIGEMGIPRLVVGSDCLAVINLLNGVEENFS

A0A6J1CP26 uncharacterized protein LOC1110134127.2e-0434.94Show/hide
Query:  ADTWFLSCDAAWLNDAGVADLGWVLRDHGGDAIGATCEPVMGLLGVVMLEMQAIRAGLLAIGEMGIPRLVVGSDCLAVINLLN
        +++W L+ +AAW  D     +GW+LRD  G+ I A+C  +     +  LE+ AI  GL AI +     + + SD L  I+LL+
Subjt:  ADTWFLSCDAAWLNDAGVADLGWVLRDHGGDAIGATCEPVMGLLGVVMLEMQAIRAGLLAIGEMGIPRLVVGSDCLAVINLLN

A0A6J5UV01 Reverse transcriptase domain-containing protein1.9e-0437.97Show/hide
Query:  LSCDAAWLNDAGVADLGWVLRDHGGDAIGATCEPVMGLLGVVMLEMQAIRAGLLAIGEMGIPRLVVGSDCLAVINLLNG
        ++CDAAW++   +  +GWV+RD  G  + A C+  M     + +E +AIR  LLA  + G+ +L V SD L +I +L G
Subjt:  LSCDAAWLNDAGVADLGWVLRDHGGDAIGATCEPVMGLLGVVMLEMQAIRAGLLAIGEMGIPRLVVGSDCLAVINLLNG

A0A7J6EAV9 RNase H domain-containing protein1.9e-0437.65Show/hide
Query:  LSCDAAWLNDAGVADLGWVLRDHGGDAIGATCEPVMGLLGVVMLEMQAIRAGLLAIGEMGIPRLVVGSDCLAVINLLNGVEENFS
        ++ DA+ +  +    L  V+RDH GD I A    ++GL+ V + E+ AIR G+       IP+++V SDCL VIN LN      S
Subjt:  LSCDAAWLNDAGVADLGWVLRDHGGDAIGATCEPVMGLLGVVMLEMQAIRAGLLAIGEMGIPRLVVGSDCLAVINLLNGVEENFS

A0A803MUM1 Uncharacterized protein7.2e-0435.56Show/hide
Query:  DAAWLNDAGVADLGWVLRDHGGDAIGATCEPVMGLLGVVMLEMQAIRAGLLAIGEMGIPRLVVGSDCLAVINLLNGVEENFSLVCTVAKE
        D A L +AG +D+G V+RDH G+ + A C+ V       ++E +A+  GL    +  + R++V SDC  ++ L+NGV ++ S +  +AKE
Subjt:  DAAWLNDAGVADLGWVLRDHGGDAIGATCEPVMGLLGVVMLEMQAIRAGLLAIGEMGIPRLVVGSDCLAVINLLNGVEENFSLVCTVAKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.3e-0428Show/hide
Query:  DAAWLNDAGVADLGWVLRDHGGDAIGATCEPVMGLLGVVMLEMQAIRAGLLAIGEMGIPRLVVGSDCLAVINLLN
        DA W  +     +GW+LR+  G  +      +     V+  E++A+R  +L +      R++  SD  A++NLLN
Subjt:  DAAWLNDAGVADLGWVLRDHGGDAIGATCEPVMGLLGVVMLEMQAIRAGLLAIGEMGIPRLVVGSDCLAVINLLN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGCTGCTGGAATTTCTTCTCTCAAGACCCATTTGTCTCTCAAGTTTTCTTTCCCTTCAAATTCATCACCAAGGAGCTCCCACAAGCTCGTCCTAAGGCTGGAAAA
TAGTGGGGAAGATCTTGGTGGTCGTCCACAACGTGTTCGTGCTGAGAATTGTCCAAAGAAACGCTTGAATTCGAGCTCCAAAGGTCTATTAGGTCCCACTGAGAATTCCC
CTGAATGCTCCCACCAGTCTCTTGCCTCTAGAAGTCTTAGAGTCATACCGGTAGACGATGGCCTCATTGCTTTTGGAGGATGGGTCTTGGGATGTTCTGGAGCGGATACG
TGGTTTCTTAGTTGTGATGCGGCTTGGCTAAATGATGCTGGGGTGGCTGATTTGGGCTGGGTGTTGCGGGATCATGGTGGAGATGCGATCGGGGCAACTTGTGAGCCGGT
CATGGGGCTTCTTGGGGTGGTTATGTTGGAAATGCAGGCAATTCGTGCTGGATTGTTGGCTATCGGTGAGATGGGGATTCCCCGACTGGTGGTGGGGTCAGATTGCTTGG
CAGTTATAAATCTCTTAAATGGTGTGGAGGAGAACTTCTCCTTAGTTTGTACAGTTGCTAAGGAGAGTTCCGGGAGGATCCTGCTAATAAGACTGCAAGAGAATTGCCTA
ATCAATAATATTGCTAGATCCTACTATCTCACTCTGCCTGGAGTGAGGTTCGAGCTTGATCTAGAAATTGAAAGGACATTCAGGAGAAGAAGGAGAGAGCAGCGTAGAAA
TCAAAATCCAATGGATAACGTGCCGTGTCTCTCGGAAGGTCCAGAAGATCCAGTGAACCCCCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAGCTGCTGGAATTTCTTCTCTCAAGACCCATTTGTCTCTCAAGTTTTCTTTCCCTTCAAATTCATCACCAAGGAGCTCCCACAAGCTCGTCCTAAGGCTGGAAAA
TAGTGGGGAAGATCTTGGTGGTCGTCCACAACGTGTTCGTGCTGAGAATTGTCCAAAGAAACGCTTGAATTCGAGCTCCAAAGGTCTATTAGGTCCCACTGAGAATTCCC
CTGAATGCTCCCACCAGTCTCTTGCCTCTAGAAGTCTTAGAGTCATACCGGTAGACGATGGCCTCATTGCTTTTGGAGGATGGGTCTTGGGATGTTCTGGAGCGGATACG
TGGTTTCTTAGTTGTGATGCGGCTTGGCTAAATGATGCTGGGGTGGCTGATTTGGGCTGGGTGTTGCGGGATCATGGTGGAGATGCGATCGGGGCAACTTGTGAGCCGGT
CATGGGGCTTCTTGGGGTGGTTATGTTGGAAATGCAGGCAATTCGTGCTGGATTGTTGGCTATCGGTGAGATGGGGATTCCCCGACTGGTGGTGGGGTCAGATTGCTTGG
CAGTTATAAATCTCTTAAATGGTGTGGAGGAGAACTTCTCCTTAGTTTGTACAGTTGCTAAGGAGAGTTCCGGGAGGATCCTGCTAATAAGACTGCAAGAGAATTGCCTA
ATCAATAATATTGCTAGATCCTACTATCTCACTCTGCCTGGAGTGAGGTTCGAGCTTGATCTAGAAATTGAAAGGACATTCAGGAGAAGAAGGAGAGAGCAGCGTAGAAA
TCAAAATCCAATGGATAACGTGCCGTGTCTCTCGGAAGGTCCAGAAGATCCAGTGAACCCCCAGTAG
Protein sequenceShow/hide protein sequence
MQAAGISSLKTHLSLKFSFPSNSSPRSSHKLVLRLENSGEDLGGRPQRVRAENCPKKRLNSSSKGLLGPTENSPECSHQSLASRSLRVIPVDDGLIAFGGWVLGCSGADT
WFLSCDAAWLNDAGVADLGWVLRDHGGDAIGATCEPVMGLLGVVMLEMQAIRAGLLAIGEMGIPRLVVGSDCLAVINLLNGVEENFSLVCTVAKESSGRILLIRLQENCL
INNIARSYYLTLPGVRFELDLEIERTFRRRRREQRRNQNPMDNVPCLSEGPEDPVNPQ