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Spg011429 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011429
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold8:15389040..15392514
RNA-Seq ExpressionSpg011429
SyntenySpg011429
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041121.1 hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa]6.9e-0637.21Show/hide
Query:  LQHGKTRRFIVMMLGFGLFDRPRGNRPSLQARELAKTNIELESTNLFVAHLRGTPCVVFFSYPPWTTSSVFSTILRSKNDLWESIVIGNGKGKLEGYIPL
        ++ GK+ ++ +M         PRGNRPSLQ  EL  T      T +    L GT C          T  +F                            L
Subjt:  LQHGKTRRFIVMMLGFGLFDRPRGNRPSLQARELAKTNIELESTNLFVAHLRGTPCVVFFSYPPWTTSSVFSTILRSKNDLWESIVIGNGKGKLEGYIPL

Query:  LTLSVLRDNDVVVEIELPVPDKLPKSAKS
         TLSVLRDNDVVVEIELPVPD+LP SA+S
Subjt:  LTLSVLRDNDVVVEIELPVPDKLPKSAKS

KAA0061963.1 hypothetical protein E6C27_scaffold89G002570 [Cucumis melo var. makuwa]4.4e-0565.79Show/hide
Query:  GKLEGYIPLLTLSVLRDNDVVVEIELPVPDKLPKSAKS
        G L GY+PLLTLS+L +ND +VEIE PVPD+LP+SA++
Subjt:  GKLEGYIPLLTLSVLRDNDVVVEIELPVPDKLPKSAKS

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]2.4e-0636.73Show/hide
Query:  LCSGDFWTYLLGISFSFLQHGKTRRFIVMMLGFGLFDRPRGNRPSLQARELAKTNIELESTNLFVAHLRGTPCVVFFSYPPWTTSSVFSTILRSKNDLWE
        LCSG FWT  L ISFSFLQ  + R     +      + PRGNR SLQ  EL KT                   V+F                        
Subjt:  LCSGDFWTYLLGISFSFLQHGKTRRFIVMMLGFGLFDRPRGNRPSLQARELAKTNIELESTNLFVAHLRGTPCVVFFSYPPWTTSSVFSTILRSKNDLWE

Query:  SIVIGNGKGKLEGYIPLLTLSVLRDNDVVVEIELPVPDKLPKSAKSF
                        L TLSVL DN+ VVEIELPVPD LP SA+SF
Subjt:  SIVIGNGKGKLEGYIPLLTLSVLRDNDVVVEIELPVPDKLPKSAKSF

TYK01784.1 hypothetical protein E5676_scaffold113G00120 [Cucumis melo var. makuwa]4.4e-0537.23Show/hide
Query:  LLGISFSFLQHGKTRRFIVMMLGFGLFDRPRGNRPSLQARELAKTNIELESTNLFVAHLRGTPCVVFFSYPPWTTSSVFSTILRSKNDLWESIVIGNGKG
        L+G   S     K+  F+V      +   PRGNRP+LQ  EL KT      T +    L GT C          T  +FS                    
Subjt:  LLGISFSFLQHGKTRRFIVMMLGFGLFDRPRGNRPSLQARELAKTNIELESTNLFVAHLRGTPCVVFFSYPPWTTSSVFSTILRSKNDLWESIVIGNGKG

Query:  KLEGYIPLLTLSVLRDNDVVVEIELPVPDKLPKSAKS
               L TLSVLRDNDVVVEIEL VPD LP SA+S
Subjt:  KLEGYIPLLTLSVLRDNDVVVEIELPVPDKLPKSAKS

TYK21916.1 hypothetical protein E5676_scaffold494G00570 [Cucumis melo var. makuwa]3.4e-0536.43Show/hide
Query:  LQHGKTRRFIVMMLGFGLFDRPRGNRPSLQARELAKTNIELESTNLFVAHLRGTPCVVFFSYPPWTTSSVFSTILRSKNDLWESIVIGNGKGKLEGYIPL
        ++ GK+ ++ +M         PRGNR SLQ  EL  T      T +    L GT C          T  +FS                           L
Subjt:  LQHGKTRRFIVMMLGFGLFDRPRGNRPSLQARELAKTNIELESTNLFVAHLRGTPCVVFFSYPPWTTSSVFSTILRSKNDLWESIVIGNGKGKLEGYIPL

Query:  LTLSVLRDNDVVVEIELPVPDKLPKSAKS
         TLSVLRDND VVEIELPVPD+LP SA+S
Subjt:  LTLSVLRDNDVVVEIELPVPDKLPKSAKS

TrEMBL top hitse value%identityAlignment
A0A5A7THH5 Uncharacterized protein3.3e-0637.21Show/hide
Query:  LQHGKTRRFIVMMLGFGLFDRPRGNRPSLQARELAKTNIELESTNLFVAHLRGTPCVVFFSYPPWTTSSVFSTILRSKNDLWESIVIGNGKGKLEGYIPL
        ++ GK+ ++ +M         PRGNRPSLQ  EL  T      T +    L GT C          T  +F                            L
Subjt:  LQHGKTRRFIVMMLGFGLFDRPRGNRPSLQARELAKTNIELESTNLFVAHLRGTPCVVFFSYPPWTTSSVFSTILRSKNDLWESIVIGNGKGKLEGYIPL

Query:  LTLSVLRDNDVVVEIELPVPDKLPKSAKS
         TLSVLRDNDVVVEIELPVPD+LP SA+S
Subjt:  LTLSVLRDNDVVVEIELPVPDKLPKSAKS

A0A5A7UCL6 Reverse transcriptase domain-containing protein2.2e-0537.23Show/hide
Query:  LLGISFSFLQHGKTRRFIVMMLGFGLFDRPRGNRPSLQARELAKTNIELESTNLFVAHLRGTPCVVFFSYPPWTTSSVFSTILRSKNDLWESIVIGNGKG
        L+G   S     K+  F+V      +   PRGNRP+LQ  EL KT      T +    L GT C          T  +FS                    
Subjt:  LLGISFSFLQHGKTRRFIVMMLGFGLFDRPRGNRPSLQARELAKTNIELESTNLFVAHLRGTPCVVFFSYPPWTTSSVFSTILRSKNDLWESIVIGNGKG

Query:  KLEGYIPLLTLSVLRDNDVVVEIELPVPDKLPKSAKS
               L TLSVLRDNDVVVEIEL VPD LP SA+S
Subjt:  KLEGYIPLLTLSVLRDNDVVVEIELPVPDKLPKSAKS

A0A5A7VIY9 Uncharacterized protein1.1e-0636.73Show/hide
Query:  LCSGDFWTYLLGISFSFLQHGKTRRFIVMMLGFGLFDRPRGNRPSLQARELAKTNIELESTNLFVAHLRGTPCVVFFSYPPWTTSSVFSTILRSKNDLWE
        LCSG FWT  L ISFSFLQ  + R     +      + PRGNR SLQ  EL KT                   V+F                        
Subjt:  LCSGDFWTYLLGISFSFLQHGKTRRFIVMMLGFGLFDRPRGNRPSLQARELAKTNIELESTNLFVAHLRGTPCVVFFSYPPWTTSSVFSTILRSKNDLWE

Query:  SIVIGNGKGKLEGYIPLLTLSVLRDNDVVVEIELPVPDKLPKSAKSF
                        L TLSVL DN+ VVEIELPVPD LP SA+SF
Subjt:  SIVIGNGKGKLEGYIPLLTLSVLRDNDVVVEIELPVPDKLPKSAKSF

A0A5D3BRJ2 Reverse transcriptase domain-containing protein2.2e-0537.23Show/hide
Query:  LLGISFSFLQHGKTRRFIVMMLGFGLFDRPRGNRPSLQARELAKTNIELESTNLFVAHLRGTPCVVFFSYPPWTTSSVFSTILRSKNDLWESIVIGNGKG
        L+G   S     K+  F+V      +   PRGNRP+LQ  EL KT      T +    L GT C          T  +FS                    
Subjt:  LLGISFSFLQHGKTRRFIVMMLGFGLFDRPRGNRPSLQARELAKTNIELESTNLFVAHLRGTPCVVFFSYPPWTTSSVFSTILRSKNDLWESIVIGNGKG

Query:  KLEGYIPLLTLSVLRDNDVVVEIELPVPDKLPKSAKS
               L TLSVLRDNDVVVEIEL VPD LP SA+S
Subjt:  KLEGYIPLLTLSVLRDNDVVVEIELPVPDKLPKSAKS

A0A5D3DE96 Uncharacterized protein1.6e-0536.43Show/hide
Query:  LQHGKTRRFIVMMLGFGLFDRPRGNRPSLQARELAKTNIELESTNLFVAHLRGTPCVVFFSYPPWTTSSVFSTILRSKNDLWESIVIGNGKGKLEGYIPL
        ++ GK+ ++ +M         PRGNR SLQ  EL  T      T +    L GT C          T  +FS                           L
Subjt:  LQHGKTRRFIVMMLGFGLFDRPRGNRPSLQARELAKTNIELESTNLFVAHLRGTPCVVFFSYPPWTTSSVFSTILRSKNDLWESIVIGNGKGKLEGYIPL

Query:  LTLSVLRDNDVVVEIELPVPDKLPKSAKS
         TLSVLRDND VVEIELPVPD+LP SA+S
Subjt:  LTLSVLRDNDVVVEIELPVPDKLPKSAKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCTGGATTTGCTGTGTTCGGGGGATTTCTGGACATATCTGTTGGGAATCTCATTTTCATTCCTTCAACATGGAAAGACAAGACGATTTATAGTTATGATGCTCGG
TTTTGGTTTGTTTGACAGGCCAAGAGGAAATAGGCCGAGTCTACAGGCCAGGGAACTAGCCAAGACTAACATAGAGTTAGAGAGCACCAACCTTTTTGTAGCTCACTTGA
GAGGAACTCCTTGTGTTGTTTTCTTCTCCTATCCTCCTTGGACAACCTCTAGCGTCTTCTCTACTATTCTCCGTTCCAAGAACGACTTGTGGGAGTCTATAGTAATAGGG
AATGGGAAGGGAAAGCTTGAAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGTTGTCGTAGAAATCGAGCTCCCGGTGCCTGATAAACTGCCAAA
GTCTGCTAAAAGCTTCCCGATCAAGCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATCTGGATTTGCTGTGTTCGGGGGATTTCTGGACATATCTGTTGGGAATCTCATTTTCATTCCTTCAACATGGAAAGACAAGACGATTTATAGTTATGATGCTCGG
TTTTGGTTTGTTTGACAGGCCAAGAGGAAATAGGCCGAGTCTACAGGCCAGGGAACTAGCCAAGACTAACATAGAGTTAGAGAGCACCAACCTTTTTGTAGCTCACTTGA
GAGGAACTCCTTGTGTTGTTTTCTTCTCCTATCCTCCTTGGACAACCTCTAGCGTCTTCTCTACTATTCTCCGTTCCAAGAACGACTTGTGGGAGTCTATAGTAATAGGG
AATGGGAAGGGAAAGCTTGAAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGTTGTCGTAGAAATCGAGCTCCCGGTGCCTGATAAACTGCCAAA
GTCTGCTAAAAGCTTCCCGATCAAGCTCTAG
Protein sequenceShow/hide protein sequence
MNLDLLCSGDFWTYLLGISFSFLQHGKTRRFIVMMLGFGLFDRPRGNRPSLQARELAKTNIELESTNLFVAHLRGTPCVVFFSYPPWTTSSVFSTILRSKNDLWESIVIG
NGKGKLEGYIPLLTLSVLRDNDVVVEIELPVPDKLPKSAKSFPIKL