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Spg011436 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011436
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionB3 domain-containing transcription factor VRN1-like
Genome locationscaffold8:16272065..16272588
RNA-Seq ExpressionSpg011436
SyntenySpg011436
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571413.1 B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. sororia]1.1e-3160.53Show/hide
Query:  IGERASKFKSMTANPSFMVTMGPSYIHTLEK--GIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKEGDICVFEL
        I E A+KF+S+T NPSFMVTMG SY+HT +    IP+ FAN +++  KE+ ++VS+GRVWKI CG R  HG  + EMR GW+ FARDN LK+GDICVFEL
Subjt:  IGERASKFKSMTANPSFMVTMGPSYIHTLEK--GIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKEGDICVFEL

Query:  IENTMISFKATIFR
        +E + +SFKATIFR
Subjt:  IENTMISFKATIFR

KAG7011178.1 B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-3160.53Show/hide
Query:  IGERASKFKSMTANPSFMVTMGPSYIHTLEK--GIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKEGDICVFEL
        I E A+KF+S+T NPSFMVTMG SY+HT +    IP+ FAN +++  KE+ ++VS+GRVWKI CG R  HG  + EMR GW+ FARDN LK+GDICVFEL
Subjt:  IGERASKFKSMTANPSFMVTMGPSYIHTLEK--GIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKEGDICVFEL

Query:  IENTMISFKATIFR
        +E + +SFKATIFR
Subjt:  IENTMISFKATIFR

XP_022158241.1 B3 domain-containing protein At4g01580-like [Momordica charantia]2.1e-3365.22Show/hide
Query:  IGERASKFKSMTANPSFMVTMGPSYIHT--LEKGIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNK-FEMRHGWKAFARDNSLKEGDICVFE
        + ERAS F+SMT N SFM+TMGPSYIHT   +  IPK+FA +++K+S+EI L+ S+GRVWKIWCG+R S   NK  EMR GWKAFARDNSL+EG ICVFE
Subjt:  IGERASKFKSMTANPSFMVTMGPSYIHT--LEKGIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNK-FEMRHGWKAFARDNSLKEGDICVFE

Query:  LIENTMISFKATIFR
        L++ T +SFK TIFR
Subjt:  LIENTMISFKATIFR

XP_022928091.1 B3 domain-containing transcription factor VRN1-like [Cucurbita moschata]1.1e-3160.53Show/hide
Query:  IGERASKFKSMTANPSFMVTMGPSYIHTLEK--GIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKEGDICVFEL
        I E A+KF+S+T NPSFMVTMG SY+HT +    IP+ FAN +++  KE+ ++VS+GRVWKI CG R  HG  + EMR GW+ FARDN LK+GDICVFEL
Subjt:  IGERASKFKSMTANPSFMVTMGPSYIHTLEK--GIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKEGDICVFEL

Query:  IENTMISFKATIFR
        +E + +SFKATIFR
Subjt:  IENTMISFKATIFR

XP_023513190.1 B3 domain-containing transcription factor VRN1-like [Cucurbita pepo subsp. pepo]1.5e-3160.53Show/hide
Query:  IGERASKFKSMTANPSFMVTMGPSYIHTLEK--GIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKEGDICVFEL
        I E A+KF+S+T NPSFMVTMG SY+HT +    IP+ FAN +++  KE+ ++VS+GRVWKI CG R  HG  + EMR GW+ FARDN LK+GDICVFEL
Subjt:  IGERASKFKSMTANPSFMVTMGPSYIHTLEK--GIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKEGDICVFEL

Query:  IENTMISFKATIFR
        +E + +SFKATIFR
Subjt:  IENTMISFKATIFR

TrEMBL top hitse value%identityAlignment
A0A1S4E1R2 B3 domain-containing transcription factor VRN1-like4.1e-2756.56Show/hide
Query:  QEARIGERASKFKSMTANPSFMVTMGPSYIHTLEKGIPKAFANMYLKESKEIILQVSNG--RVWKIWCGMR--LSHGTNKFEMRHGWKAFARDNSLKEGD
        + + I  +ASKFK +T NPSFMVTMG SY+HT    IP  FA+ YLKE+K++IL VS+   +VWKI C  R   +    +FEM  GW+ FARDNSLKEGD
Subjt:  QEARIGERASKFKSMTANPSFMVTMGPSYIHTLEKGIPKAFANMYLKESKEIILQVSNG--RVWKIWCGMR--LSHGTNKFEMRHGWKAFARDNSLKEGD

Query:  ICVFELIEN--TMISFKATIFR
        ICVFEL++N   M  FK TIFR
Subjt:  ICVFELIEN--TMISFKATIFR

A0A5A7TS22 B3 domain-containing transcription factor VRN1-like1.2e-2650.41Show/hide
Query:  PSTTTQEARIGERASKFKSMTANPSFMVTMGPSYIHTLE-KGIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKE
        P+ T  +  + +RAS+FKS   NPSFMVTM PSYI T     +P+ F   Y+KES ++ L+V +GR W++WCG+R +    + E++ GWK FA DN LKE
Subjt:  PSTTTQEARIGERASKFKSMTANPSFMVTMGPSYIHTLE-KGIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKE

Query:  GDICVFELIE-NTMISFKATIFR
        GDICVFEL+E N  + FK  IFR
Subjt:  GDICVFELIE-NTMISFKATIFR

A0A6J1E0D8 B3 domain-containing protein At4g01580-like1.0e-3365.22Show/hide
Query:  IGERASKFKSMTANPSFMVTMGPSYIHT--LEKGIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNK-FEMRHGWKAFARDNSLKEGDICVFE
        + ERAS F+SMT N SFM+TMGPSYIHT   +  IPK+FA +++K+S+EI L+ S+GRVWKIWCG+R S   NK  EMR GWKAFARDNSL+EG ICVFE
Subjt:  IGERASKFKSMTANPSFMVTMGPSYIHT--LEKGIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNK-FEMRHGWKAFARDNSLKEGDICVFE

Query:  LIENTMISFKATIFR
        L++ T +SFK TIFR
Subjt:  LIENTMISFKATIFR

A0A6J1EJA7 B3 domain-containing transcription factor VRN1-like5.5e-3260.53Show/hide
Query:  IGERASKFKSMTANPSFMVTMGPSYIHTLEK--GIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKEGDICVFEL
        I E A+KF+S+T NPSFMVTMG SY+HT +    IP+ FAN +++  KE+ ++VS+GRVWKI CG R  HG  + EMR GW+ FARDN LK+GDICVFEL
Subjt:  IGERASKFKSMTANPSFMVTMGPSYIHTLEK--GIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKEGDICVFEL

Query:  IENTMISFKATIFR
        +E + +SFKATIFR
Subjt:  IENTMISFKATIFR

A0A6J1I6H9 B3 domain-containing transcription factor VRN1-like6.7e-3059.65Show/hide
Query:  IGERASKFKSMTANPSFMVTMGPSYIHTLEK--GIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKEGDICVFEL
        I E A+KF+S+T NPSFMVTMG SY+HT +    IP  FAN +++  KE+ ++VS+GRVWKI CG R   G  + EMR GW+ FARDN LK+GDICVFEL
Subjt:  IGERASKFKSMTANPSFMVTMGPSYIHTLEK--GIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKEGDICVFEL

Query:  IENTMISFKATIFR
        +E + +SFKATIFR
Subjt:  IENTMISFKATIFR

SwissProt top hitse value%identityAlignment
Q0JP99 B3 domain-containing protein Os01g02341003.8e-0634.29Show/hide
Query:  NPSFMVTMGPSYIHT-LEKGIPKAFANMYL-KESKEIILQVSNGRVWKIWCGMRLSHGTN----KFEMRHGWKAFARDNSLKEGDICVFELIENTMISFK
        +PSF+  M  S++ +    G+P  F N YL K   +I+L+  NG           +H TN    K  +  GW+ FA ++ +K GD+ VFEL+  T   FK
Subjt:  NPSFMVTMGPSYIHT-LEKGIPKAFANMYL-KESKEIILQVSNGRVWKIWCGMRLSHGTN----KFEMRHGWKAFARDNSLKEGDICVFELIENTMISFK

Query:  ATIFR
          I R
Subjt:  ATIFR

Q2QMT7 B3 domain-containing protein Os12g05914008.5e-0634.94Show/hide
Query:  IPKAFANMYLKESKEII-LQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKEGDICVFELIENTMISFKATIFRPT
        +P  FAN    +  E++ L+V NG+ + +    +++   N+  +R GW AFARD  LK+ DI VF    ++   FK  IF P+
Subjt:  IPKAFANMYLKESKEII-LQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKEGDICVFELIENTMISFKATIFRPT

Q8L3W1 B3 domain-containing transcription factor VRN11.2e-0732.26Show/hide
Query:  KHPSTTTQEARIGERASKFKSMTANPSFMVTMGPSYIHT-LEKGIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSL
        K   T  +  R    A  F+    NP F V + PSY++      +P  FA  YL      I      + W + C  +   G  KF    GW  F  +N+L
Subjt:  KHPSTTTQEARIGERASKFKSMTANPSFMVTMGPSYIHT-LEKGIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSL

Query:  KEGDICVFELIENTMISFKATIFR
         EGD+CVFEL+       K T FR
Subjt:  KEGDICVFELIENTMISFKATIFR

Q8S2E6 B3 domain-containing protein Os01g07235001.5e-0730.83Show/hide
Query:  TTQEARIGERASKFKSMTANPSFMVTMGPSYI-HTLEKGIPKAFANMYL-KESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKEGD
        T +  R  E A  F+S    P  ++ M   ++ ++     P  F+  +L +E  +++L+   G+VW +     L     +  +  GW AFAR N L+EGD
Subjt:  TTQEARIGERASKFKSMTANPSFMVTMGPSYI-HTLEKGIPKAFANMYL-KESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKEGD

Query:  ICVFELIENTMISFKATIFR
         CVFEL+      F+  IFR
Subjt:  ICVFELIENTMISFKATIFR

Q9XIB5 B3 domain-containing protein REM192.6e-0730.65Show/hide
Query:  KHPSTTTQEARIGERASKFKSMTANPSFMVTMGPSYIHT-LEKGIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSL
        K   T  +  R    A  F+    NP F V + PSY++      +P  FA  YL      I      + W + C  +   G  KF    GW  F  +N++
Subjt:  KHPSTTTQEARIGERASKFKSMTANPSFMVTMGPSYIHT-LEKGIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSL

Query:  KEGDICVFELIENTMISFKATIFR
         EGD+CVFEL+       + T FR
Subjt:  KEGDICVFELIENTMISFKATIFR

Arabidopsis top hitse value%identityAlignment
AT1G49480.1 related to vernalization1 11.9e-0830.65Show/hide
Query:  KHPSTTTQEARIGERASKFKSMTANPSFMVTMGPSYIHT-LEKGIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSL
        K   T  +  R    A  F+    NP F V + PSY++      +P  FA  YL      I      + W + C  +   G  KF    GW  F  +N++
Subjt:  KHPSTTTQEARIGERASKFKSMTANPSFMVTMGPSYIHT-LEKGIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSL

Query:  KEGDICVFELIENTMISFKATIFR
         EGD+CVFEL+       + T FR
Subjt:  KEGDICVFELIENTMISFKATIFR

AT3G18990.1 AP2/B3-like transcriptional factor family protein8.4e-0932.26Show/hide
Query:  KHPSTTTQEARIGERASKFKSMTANPSFMVTMGPSYIHT-LEKGIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSL
        K   T  +  R    A  F+    NP F V + PSY++      +P  FA  YL      I      + W + C  +   G  KF    GW  F  +N+L
Subjt:  KHPSTTTQEARIGERASKFKSMTANPSFMVTMGPSYIHT-LEKGIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSL

Query:  KEGDICVFELIENTMISFKATIFR
         EGD+CVFEL+       K T FR
Subjt:  KEGDICVFELIENTMISFKATIFR

AT4G31630.1 Transcriptional factor B3 family protein1.6e-0428.43Show/hide
Query:  ERASKFKSMTANPSFMVT-MGPSYIHTLEKGIPKAFA--NMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKEGDICVFELI
        +RA K    +++ S++V  + PS +      +   FA  N   +   EI L+  + + W +   +R +  T +  MR GW++F R+N +K G IC F+L+
Subjt:  ERASKFKSMTANPSFMVT-MGPSYIHTLEKGIPKAFA--NMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKEGDICVFELI

Query:  EN
        ++
Subjt:  EN

AT4G31680.1 Transcriptional factor B3 family protein2.1e-0433.8Show/hide
Query:  IPKAFA--NMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKEGDICVFELIEN
        +P+ FA  N   K   EI+L    G+ W+     R+S    +  +  GWK+   +N LK GD C F+L++N
Subjt:  IPKAFA--NMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAFARDNSLKEGDICVFELIEN

AT5G58280.1 AP2/B3-like transcriptional factor family protein3.0e-0628.79Show/hide
Query:  PIKHPSTTTQEARIG--ERASKFKS--MTANPSFMVTMGPSYIHT-LEKGIPKAF-ANMYLKESKEIILQVSNGRVWK-IWCGMRLSHGTNKFEMRHGWK
        P+      + E ++G  + A KF+    + +P F+ +M  S++++    G+P  F A+ + +E+ EI L+   G V++ ++ G R         +  GWK
Subjt:  PIKHPSTTTQEARIG--ERASKFKS--MTANPSFMVTMGPSYIHT-LEKGIPKAF-ANMYLKESKEIILQVSNGRVWK-IWCGMRLSHGTNKFEMRHGWK

Query:  AFARDNSLKEGDICVFELIENTMISFKATIFR
         FA D+ L +GD  +FEL+E     FK  +F+
Subjt:  AFARDNSLKEGDICVFELIENTMISFKATIFR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGATTTGAAACCTCTCAAAGCGATAAAGTCGGAAAAGTTTCCGATTAAGCATCCATCAACTACAACACAAGAAGCAAGAATTGGTGAAAGGGCTTCAAAATTCAA
ATCAATGACTGCAAATCCTTCTTTTATGGTTACAATGGGCCCTTCATACATTCATACGCTGGAAAAAGGTATTCCAAAAGCCTTTGCAAATATGTATCTGAAGGAATCCA
AAGAGATCATTCTTCAAGTTTCAAATGGAAGGGTTTGGAAGATTTGGTGTGGTATGCGTTTGTCTCATGGAACAAACAAGTTTGAAATGAGACATGGTTGGAAGGCATTT
GCTAGAGATAATAGCTTGAAAGAAGGTGATATTTGTGTTTTCGAGTTAATAGAAAACACTATGATATCATTTAAAGCTACCATCTTTCGGCCAACATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGATTTGAAACCTCTCAAAGCGATAAAGTCGGAAAAGTTTCCGATTAAGCATCCATCAACTACAACACAAGAAGCAAGAATTGGTGAAAGGGCTTCAAAATTCAA
ATCAATGACTGCAAATCCTTCTTTTATGGTTACAATGGGCCCTTCATACATTCATACGCTGGAAAAAGGTATTCCAAAAGCCTTTGCAAATATGTATCTGAAGGAATCCA
AAGAGATCATTCTTCAAGTTTCAAATGGAAGGGTTTGGAAGATTTGGTGTGGTATGCGTTTGTCTCATGGAACAAACAAGTTTGAAATGAGACATGGTTGGAAGGCATTT
GCTAGAGATAATAGCTTGAAAGAAGGTGATATTTGTGTTTTCGAGTTAATAGAAAACACTATGATATCATTTAAAGCTACCATCTTTCGGCCAACATGA
Protein sequenceShow/hide protein sequence
MADLKPLKAIKSEKFPIKHPSTTTQEARIGERASKFKSMTANPSFMVTMGPSYIHTLEKGIPKAFANMYLKESKEIILQVSNGRVWKIWCGMRLSHGTNKFEMRHGWKAF
ARDNSLKEGDICVFELIENTMISFKATIFRPT