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Spg011442 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011442
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold8:16160289..16171190
RNA-Seq ExpressionSpg011442
SyntenySpg011442
Gene Ontology termsGO:1902600 - proton transmembrane transport (biological process)
GO:0016471 - vacuolar proton-transporting V-type ATPase complex (cellular component)
GO:0042626 - ATPase-coupled transmembrane transporter activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025994.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]2.1e-0673.68Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VRVA  PTQYA+ FGDKTEW AG+  TQ+GIHSFP LG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]3.6e-0663.41Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
        ++RVA  PTQYA+ F DKTEW AG++ TQ+GIHSFP LG +
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.9e-0776.32Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VRVA  PTQYA+ FGDKTEW AG++ TQ+GIHSFPLLG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
TYK19425.1 gag/pol protein [Cucumis melo var. makuwa]3.9e-0570.59Show/hide
Query:  PTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
        PTQYA+ FGDKTEW AG++TTQ+GIH FP LG +
Subjt:  PTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
TYK27885.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]4.2e-0763.64Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDEC
        ++RVA  PTQYA+ F DKTEW AG++ TQ+GIH FP LG VD+C
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDEC
TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class1.0e-0673.68Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VRVA  PTQYA+ FGDKTEW AG+  TQ+GIHSFP LG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
A0A5A7TKJ4 Gag/pol protein1.7e-0663.41Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
        ++RVA  PTQYA+ F DKTEW AG++ TQ+GIHSFP LG +
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
A0A5A7VFG5 Ty1-copia retrotransposon protein9.2e-0876.32Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VRVA  PTQYA+ FGDKTEW AG++ TQ+GIHSFPLLG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
A0A5D3D7C0 Gag/pol protein1.9e-0570.59Show/hide
Query:  PTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
        PTQYA+ FGDKTEW AG++TTQ+GIH FP LG +
Subjt:  PTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
A0A5D3DX33 Retrovirus-related pol polyprotein from transposon tnt 1-942.0e-0763.64Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDEC
        ++RVA  PTQYA+ F DKTEW AG++ TQ+GIH FP LG VD+C
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDEC
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTTGGCGAGACTGAAACAGGCTAAAGAAGAATCTGAAAGGGAAGTGGCGATCTATCGCTCCCACTTGGTGGCTGAATATCAGAAGAAAGTTTCCAAGAATTCACG
ATTAGCAAGGAGCCTCGACAACTCCACCCCGTCAGCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGG
ACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTGTTGTTCATTAGAGGAGCGCTGGTCTATATTCGTGGACACAGAAATGTTCTAC
AGTGAGAAGAGTTCAGCTTCCCACAACTACGTTCCTAATCTCAGAGTTATAGCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCAGAGCAATCAAGAATCATTCGT
TGAAGTATTCAGAGTCGTCAACGGAGTTGCCACCTCGTCAAATCAAGGCTCCACAATTACAGCTGCAAATTACCTTCCTTTGACAGCAAATTCATCAGATAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGTTGGCGAGACTGAAACAGGCTAAAGAAGAATCTGAAAGGGAAGTGGCGATCTATCGCTCCCACTTGGTGGCTGAATATCAGAAGAAAGTTTCCAAGAATTCACG
ATTAGCAAGGAGCCTCGACAACTCCACCCCGTCAGCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGG
ACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTGTTGTTCATTAGAGGAGCGCTGGTCTATATTCGTGGACACAGAAATGTTCTAC
AGTGAGAAGAGTTCAGCTTCCCACAACTACGTTCCTAATCTCAGAGTTATAGCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCAGAGCAATCAAGAATCATTCGT
TGAAGTATTCAGAGTCGTCAACGGAGTTGCCACCTCGTCAAATCAAGGCTCCACAATTACAGCTGCAAATTACCTTCCTTTGACAGCAAATTCATCAGATAAATAA
Protein sequenceShow/hide protein sequence
MKLARLKQAKEESEREVAIYRSHLVAEYQKKVSKNSRLARSLDNSTPSAWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECCSLEERWSIFVDTEMFY
SEKSSASHNYVPNLRVIAGKIKWWCSSLLQSNQESFVEVFRVVNGVATSSNQGSTITAANYLPLTANSSDK