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Spg011450 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011450
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold8:13598451..13606586
RNA-Seq ExpressionSpg011450
SyntenySpg011450
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.1e-0851.25Show/hide
Query:  AVARRISKLIEESSKDKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNLLMKAVDERDLEIA
        A+A+ I K + ES K  + +K+NPL+      S +     +P VMSVMM DV  +  MAEMERK+NLLMK VDERD EIA
Subjt:  AVARRISKLIEESSKDKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNLLMKAVDERDLEIA

XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]1.1e-0851.25Show/hide
Query:  AVARRISKLIEESSKDKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNLLMKAVDERDLEIA
        A+A+ I K + ES K  + +K+NPL+      S +     +P VMSVMM DV  +  MAEMERK+NLLMK VDERD EIA
Subjt:  AVARRISKLIEESSKDKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNLLMKAVDERDLEIA

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.1e-0851.25Show/hide
Query:  AVARRISKLIEESSKDKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNLLMKAVDERDLEIA
        A+A+ I K + ES K  + +K+NPL+      S +     +P VMSVMM DV  +  MAEMERK+NLLMK VDERD EIA
Subjt:  AVARRISKLIEESSKDKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNLLMKAVDERDLEIA

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]1.1e-0851.25Show/hide
Query:  AVARRISKLIEESSKDKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNLLMKAVDERDLEIA
        A+A+ I K + ES K  + +K+NPL+      S +     +P VMSVMM DV  +  MAEMERK+NLLMK VDERD EIA
Subjt:  AVARRISKLIEESSKDKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNLLMKAVDERDLEIA

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.1e-0851.25Show/hide
Query:  AVARRISKLIEESSKDKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNLLMKAVDERDLEIA
        A+A+ I K + ES K  + +K+NPL+      S +     +P VMSVMM DV  +  MAEMERK+NLLMK VDERD EIA
Subjt:  AVARRISKLIEESSKDKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNLLMKAVDERDLEIA

TrEMBL top hitse value%identityAlignment
A0A5A7SY59 Ty3-gypsy retrotransposon protein1.6e-0842.39Show/hide
Query:  IEIKEDHTPLAVARRISKLIEESSKDKVAVKDNPLFESVTPTSEQPKDTL-NPHVMSVMMVDVD-QDERMAEMERKLNLLMKAVDERDLEIA
        I++ ED  P  VA+ I + I +  K  + +K+NP  +     SE+  + +  P++MSVM+ DVD  ++RMAE+E+K+N+LMKAV+ER+ EIA
Subjt:  IEIKEDHTPLAVARRISKLIEESSKDKVAVKDNPLFESVTPTSEQPKDTL-NPHVMSVMMVDVD-QDERMAEMERKLNLLMKAVDERDLEIA

A0A5A7TZU9 Ribonuclease H1.6e-0843.48Show/hide
Query:  IEIKEDHTPLAVARRISKLIEESSKDKVAVKDNPLFESVTPTSEQPKDTL-NPHVMSVMMVDVD-QDERMAEMERKLNLLMKAVDERDLEIA
        I+  ED  P  VA+ I + I +  K  + +K+NP  +     SE+  + +  P++MSVM+ DVD  ++RMAE+E+K+N+LMKAV+ERD EIA
Subjt:  IEIKEDHTPLAVARRISKLIEESSKDKVAVKDNPLFESVTPTSEQPKDTL-NPHVMSVMMVDVD-QDERMAEMERKLNLLMKAVDERDLEIA

A0A5A7U9H0 Ty3-gypsy retrotransposon protein2.1e-0840.78Show/hide
Query:  WQNSVKIVCERIEIKEDHTPLAVARRISKLIEESSKDKVAVKDNPLFESVTPTSEQP-KDTLNPHVMSVMMVDVD-QDERMAEMERKLNLLMKAVDERDL
        W N+ +    +I+  ED  P  VA  I + I +  K  + +K+NP  +     SE+  ++   P++MSVM+ DVD  ++RMAE+E+K+N+LMKAV+ERD 
Subjt:  WQNSVKIVCERIEIKEDHTPLAVARRISKLIEESSKDKVAVKDNPLFESVTPTSEQP-KDTLNPHVMSVMMVDVD-QDERMAEMERKLNLLMKAVDERDL

Query:  EIA
        EIA
Subjt:  EIA

A0A5D3BY32 Retrotransposon protein putative ty3-gypsy sub-class9.5e-0943.48Show/hide
Query:  IEIKEDHTPLAVARRISKLIEESSKDKVAVKDNPLFESVTPTSEQP-KDTLNPHVMSVMMVDVD-QDERMAEMERKLNLLMKAVDERDLEIA
        I+  ED  P  VA+ I + I +  KD + +K+NP  +     S++  ++   P++MSVM+ DVD  ++RMAE+E+K+N+LMKAV+ERD EIA
Subjt:  IEIKEDHTPLAVARRISKLIEESSKDKVAVKDNPLFESVTPTSEQP-KDTLNPHVMSVMMVDVD-QDERMAEMERKLNLLMKAVDERDLEIA

A0A5D3BY54 Ty3-gypsy retrotransposon protein7.3e-0950Show/hide
Query:  VARRISKLIEESSKDKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNLLMKAVDERDLEI
        VA+ I K + ES K  + +K+NPL+++   +S + K   +P VMSVMM D+  +  MAEMERK+N LMKAV+ERD EI
Subjt:  VARRISKLIEESSKDKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNLLMKAVDERDLEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGGCCTGCACGCCGACTCAATATGCCCACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAATCACACCAGATGGAATTCACTCCTTCTCGA
ATCTAGGGTAAGTAGAAGTGTGTTCCCTTTAGTGGTGTCTCCAGGTCTTGAACAATGGGCCCTGCCCTCTCTATGGCACAAGAGGGACTTCTGTTTGGTGGTTGGACCTC
AAACAGGTTGTTCATTAGAGGAGCACTGGGACTTACGGATAAAGAGCCAAGAAAGATCAAAGGGGCTGCTGTATTTTCCAAAACGAAAAAGAAGAATTTGGCAAAATTCG
GTTAAGATCGTCTGCGAAAGAATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAGAAGGATCTCAAAGTTGATTGAAGAATCCTCTAAGGACAAAGTTGCAGT
CAAAGACAACCCGCTGTTCGAATCTGTCACTCCAACATCTGAGCAGCCAAAGGATACACTAAATCCTCATGTGATGTCCGTCATGATGGTTGATGTAGACCAAGATGAAA
GAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGTTGATGAAAGAGATCTTGAGATTGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGGCCTGCACGCCGACTCAATATGCCCACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAATCACACCAGATGGAATTCACTCCTTCTCGA
ATCTAGGGTAAGTAGAAGTGTGTTCCCTTTAGTGGTGTCTCCAGGTCTTGAACAATGGGCCCTGCCCTCTCTATGGCACAAGAGGGACTTCTGTTTGGTGGTTGGACCTC
AAACAGGTTGTTCATTAGAGGAGCACTGGGACTTACGGATAAAGAGCCAAGAAAGATCAAAGGGGCTGCTGTATTTTCCAAAACGAAAAAGAAGAATTTGGCAAAATTCG
GTTAAGATCGTCTGCGAAAGAATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAGAAGGATCTCAAAGTTGATTGAAGAATCCTCTAAGGACAAAGTTGCAGT
CAAAGACAACCCGCTGTTCGAATCTGTCACTCCAACATCTGAGCAGCCAAAGGATACACTAAATCCTCATGTGATGTCCGTCATGATGGTTGATGTAGACCAAGATGAAA
GAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGTTGATGAAAGAGATCTTGAGATTGCTTGA
Protein sequenceShow/hide protein sequence
MGESGLHADSICPPFWGQDRVGSWEHNHTRWNSLLLESRVSRSVFPLVVSPGLEQWALPSLWHKRDFCLVVGPQTGCSLEEHWDLRIKSQERSKGLLYFPKRKRRIWQNS
VKIVCERIEIKEDHTPLAVARRISKLIEESSKDKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNLLMKAVDERDLEIA