; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg011454 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011454
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold8:12891411..12892577
RNA-Seq ExpressionSpg011454
SyntenySpg011454
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025858.1 retrotransposon protein [Cucumis melo var. makuwa]9.3e-1837.36Show/hide
Query:  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIEAEKETFDLWVK-----------------------------
        GY AQL  +M EKLPG  V A + I+ R++TLK+ +QAIAEM GL CSG GWN+E KCI AEKE FD WV+                             
Subjt:  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIEAEKETFDLWVK-----------------------------

Query:  -----VMAEMRSNVPD---DRVNLSGSSNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAV
               A++ SN P    DR ++ G  N D P        +++S+D+ R +  S+    R  S GSKRKR        EA+
Subjt:  -----VMAEMRSNVPD---DRVNLSGSSNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAV

KAA0043337.1 retrotransposon protein [Cucumis melo var. makuwa]6.5e-1942.58Show/hide
Query:  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIEAEKETFDLWVKVMAEMR-------SNVPD---DRVNLSGS
        GY AQL  +M EKLP   V A + I+ R++TLK+ +QAIAE+ G  CSG GWN+E KCI AEKE FD WV+    +R       SN P    DR ++ G 
Subjt:  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIEAEKETFDLWVKVMAEMR-------SNVPD---DRVNLSGS

Query:  SNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAV
         N D P        +++S+D+ R +  S+T   R  S GSKRKR        EA+
Subjt:  SNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAV

KAA0050293.1 retrotransposon protein [Cucumis melo var. makuwa]3.2e-1837.02Show/hide
Query:  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIEAEKETFDLWVK-----------------------------
        GY AQL  +M +KLPG  V A + I+ R++TLK+ +QAIAEM GL CSG GWN+E KCI AEKE FD WV+                             
Subjt:  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIEAEKETFDLWVK-----------------------------

Query:  -----VMAEMRSNVPDDRVNL--SGSSNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAV
               A++ SN P D  +    G  N D P++      V++S+D+ R +  S+    R  S GSKRKR        EA+
Subjt:  -----VMAEMRSNVPDDRVNL--SGSSNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAV

KAA0060663.1 retrotransposon protein [Cucumis melo var. makuwa]3.2e-1840.41Show/hide
Query:  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIEAEKETFDLWVKVMAEMRSNVPDDRVNLSGSSNNDIPILSF
        GY  QL  +M  K+PG ++ A S I+SR++ +K+ + A+AEM G  CSG GWN+E KCI AEKE FD W +  A++ SN P         +  D      
Subjt:  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIEAEKETFDLWVKVMAEMRSNVPDDRVNLSGSSNNDIPILSF

Query:  TMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAVR
          P +NMS D+   T  ++    RN S GSKRKR G      + VR
Subjt:  TMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAVR

XP_031742657.1 uncharacterized protein LOC116404426 [Cucumis sativus]2.5e-1836.07Show/hide
Query:  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIEAEKETFDLWVK-----------------------------
        GY AQL  +M  KLPG +V A + I+ R++TLK+ YQAIAEM G  CSG GWN++ KCI AEKE FD WV+                             
Subjt:  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIEAEKETFDLWVK-----------------------------

Query:  -----VMAEMRSNVPDDRVNLSGSSNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAVREGM
               A++ SNVP           ND+ I S +    NMS+D+  +T  S+   +R +S GSK +R G     A+ +++ M
Subjt:  -----VMAEMRSNVPDDRVNLSGSSNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAVREGM

TrEMBL top hitse value%identityAlignment
A0A5A7SI64 Retrotransposon protein4.5e-1837.36Show/hide
Query:  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIEAEKETFDLWVK-----------------------------
        GY AQL  +M EKLPG  V A + I+ R++TLK+ +QAIAEM GL CSG GWN+E KCI AEKE FD WV+                             
Subjt:  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIEAEKETFDLWVK-----------------------------

Query:  -----VMAEMRSNVPD---DRVNLSGSSNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAV
               A++ SN P    DR ++ G  N D P        +++S+D+ R +  S+    R  S GSKRKR        EA+
Subjt:  -----VMAEMRSNVPD---DRVNLSGSSNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAV

A0A5A7U308 Retrotransposon protein1.6e-1837.02Show/hide
Query:  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIEAEKETFDLWVK-----------------------------
        GY AQL  +M +KLPG  V A + I+ R++TLK+ +QAIAEM GL CSG GWN+E KCI AEKE FD WV+                             
Subjt:  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIEAEKETFDLWVK-----------------------------

Query:  -----VMAEMRSNVPDDRVNL--SGSSNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAV
               A++ SN P D  +    G  N D P++      V++S+D+ R +  S+    R  S GSKRKR        EA+
Subjt:  -----VMAEMRSNVPDDRVNL--SGSSNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAV

A0A5A7UXH8 Retrotransposon protein1.6e-1840.41Show/hide
Query:  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIEAEKETFDLWVKVMAEMRSNVPDDRVNLSGSSNNDIPILSF
        GY  QL  +M  K+PG ++ A S I+SR++ +K+ + A+AEM G  CSG GWN+E KCI AEKE FD W +  A++ SN P         +  D      
Subjt:  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIEAEKETFDLWVKVMAEMRSNVPDDRVNLSGSSNNDIPILSF

Query:  TMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAVR
          P +NMS D+   T  ++    RN S GSKRKR G      + VR
Subjt:  TMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAVR

A0A5A7V6W3 Retrotransposon protein4.5e-1837.91Show/hide
Query:  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIEAEKETFDLWVK-----------------------------
        GY AQL  +M EKLPG  V A + I+ R++TLK+ +QAIAEM G  CSG GWN+E KCI AEKE FD WV+                             
Subjt:  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIEAEKETFDLWVK-----------------------------

Query:  -----VMAEMRSNVPD---DRVNLSGSSNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAV
               A++ SN P    DR ++ G  N D P  S     V++S+D+ R +  S+    R  S GSKRKR        EA+
Subjt:  -----VMAEMRSNVPD---DRVNLSGSSNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAV

A0A5D3BT72 Retrotransposon protein3.1e-1942.58Show/hide
Query:  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIEAEKETFDLWVKVMAEMR-------SNVPD---DRVNLSGS
        GY AQL  +M EKLP   V A + I+ R++TLK+ +QAIAE+ G  CSG GWN+E KCI AEKE FD WV+    +R       SN P    DR ++ G 
Subjt:  GYQAQLEHLMREKLPGRDVLAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIEAEKETFDLWVKVMAEMR-------SNVPD---DRVNLSGS

Query:  SNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAV
         N D P        +++S+D+ R +  S+T   R  S GSKRKR        EA+
Subjt:  SNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRGSKRKRSGPNMHIAEAV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCTGATTTCCCTCTTCAATGCCCCTGATTTCGATATTCAACTCTCTCTCTCTCATCATTCACCTTTCTCACCCTTTGGATGTAGGGTTTCTGCCCTTTCTTCTTC
TCGTGCCTCTTCTTTCCGTTTCTTCTTCCAGTCCCTCGTCTTCTCTCTCGCCGGTTGTTCTTCCCATGCCTCATCTGCAATTTCCACCAGATCTGAAACCCTTTTACTAG
ATCCCCTCGCCGCTCTGAATAGGGTTCCCCTTCTTGCCCGTTTTCCTTCATCTGGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTTCCTGGACGGGACGTT
CTAGCACAGAGCTGCATTGAATCCAGGGTTCGCACCCTGAAGAAACAATACCAGGCTATTGCAGAGATGATGGGCCTTGGATGCAGTGGCATCGGCTGGAACGAGGAATT
TAAGTGCATCGAGGCAGAGAAAGAAACATTCGACCTGTGGGTGAAGGTGATGGCAGAGATGAGGTCTAACGTACCAGATGATAGAGTAAACCTAAGTGGATCCTCGAACA
ACGACATCCCCATCCTGTCGTTCACCATGCCTAATGTGAACATGTCAGAGGATGAGCCTCGGGTGACGCCGGACAGTCAAACTTACGCAACTAGAAATTCGTCACGTGGT
AGTAAGAGAAAGAGATCTGGGCCTAACATGCACATCGCAGAAGCTGTGAGAGAGGGAATGACCTCGTTCACATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCCTGATTTCCCTCTTCAATGCCCCTGATTTCGATATTCAACTCTCTCTCTCTCATCATTCACCTTTCTCACCCTTTGGATGTAGGGTTTCTGCCCTTTCTTCTTC
TCGTGCCTCTTCTTTCCGTTTCTTCTTCCAGTCCCTCGTCTTCTCTCTCGCCGGTTGTTCTTCCCATGCCTCATCTGCAATTTCCACCAGATCTGAAACCCTTTTACTAG
ATCCCCTCGCCGCTCTGAATAGGGTTCCCCTTCTTGCCCGTTTTCCTTCATCTGGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTTCCTGGACGGGACGTT
CTAGCACAGAGCTGCATTGAATCCAGGGTTCGCACCCTGAAGAAACAATACCAGGCTATTGCAGAGATGATGGGCCTTGGATGCAGTGGCATCGGCTGGAACGAGGAATT
TAAGTGCATCGAGGCAGAGAAAGAAACATTCGACCTGTGGGTGAAGGTGATGGCAGAGATGAGGTCTAACGTACCAGATGATAGAGTAAACCTAAGTGGATCCTCGAACA
ACGACATCCCCATCCTGTCGTTCACCATGCCTAATGTGAACATGTCAGAGGATGAGCCTCGGGTGACGCCGGACAGTCAAACTTACGCAACTAGAAATTCGTCACGTGGT
AGTAAGAGAAAGAGATCTGGGCCTAACATGCACATCGCAGAAGCTGTGAGAGAGGGAATGACCTCGTTCACATAA
Protein sequenceShow/hide protein sequence
MLLISLFNAPDFDIQLSLSHHSPFSPFGCRVSALSSSRASSFRFFFQSLVFSLAGCSSHASSAISTRSETLLLDPLAALNRVPLLARFPSSGYQAQLEHLMREKLPGRDV
LAQSCIESRVRTLKKQYQAIAEMMGLGCSGIGWNEEFKCIEAEKETFDLWVKVMAEMRSNVPDDRVNLSGSSNNDIPILSFTMPNVNMSEDEPRVTPDSQTYATRNSSRG
SKRKRSGPNMHIAEAVREGMTSFT