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Spg011457 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011457
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionProtein PAF1-like protein
Genome locationscaffold8:14654247..14660960
RNA-Seq ExpressionSpg011457
SyntenySpg011457
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0016570 - histone modification (biological process)
GO:0016593 - Cdc73/Paf1 complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0003682 - chromatin binding (molecular function)
InterPro domainsIPR007133 - RNA polymerase II associated factor Paf1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587852.1 hypothetical protein SDJN03_16417, partial [Cucurbita argyrosperma subsp. sororia]3.3e-2581.94Show/hide
Query:  QQQVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQRNKFQYDPESYAQNFNGGLDGEDDCP
        Q + REEE WMV+KL+ LKEVSEMVAGPKWKNFIRKMGGYLKGK+QRN+FQYDPESYA NF+GG+DGEDD P
Subjt:  QQQVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQRNKFQYDPESYAQNFNGGLDGEDDCP

XP_008443900.1 PREDICTED: uncharacterized protein LOC103487383 [Cucumis melo]1.5e-2572.62Show/hide
Query:  QQQVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQRNKFQYDPESYAQNFNGGLDGEDDCPLASLQASSDFEI
        Q+Q REEESWMV+KL+ +KEVSEMVAGPKWKNFIRKMGGYLKGK+QRN+FQYDPESYA NF+GG DGE+D     +  SS F +
Subjt:  QQQVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQRNKFQYDPESYAQNFNGGLDGEDDCPLASLQASSDFEI

XP_022927019.1 uncharacterized protein LOC111433973 [Cucurbita moschata]6.6e-2683.33Show/hide
Query:  QQQVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQRNKFQYDPESYAQNFNGGLDGEDDCP
        QQ+ REEE WMV+KL+ LKEVSEMVAGPKWKNFIRKMGGYLKGK+QRN+FQYDPESYA NF+GG+DGEDD P
Subjt:  QQQVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQRNKFQYDPESYAQNFNGGLDGEDDCP

XP_023003195.1 uncharacterized protein LOC111496880 [Cucurbita maxima]6.6e-2683.33Show/hide
Query:  QQQVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQRNKFQYDPESYAQNFNGGLDGEDDCP
        QQ+ REEE WMV+KL+ LKEVSEMVAGPKWKNFIRKMGGYLKG++QRN+FQYDPESYA NF+GGLDGEDD P
Subjt:  QQQVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQRNKFQYDPESYAQNFNGGLDGEDDCP

XP_038876901.1 uncharacterized protein LOC120069255 [Benincasa hispida]8.6e-2672.62Show/hide
Query:  QQQVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQRNKFQYDPESYAQNFNGGLDGEDDCPLASLQASSDFEI
        Q+Q REEESWMVRKL+ +KEVSEMVAGPKWKNF+RKMGGYLKGK+QRN+FQYDPESYA NF+GG DGE+D     +  SS F +
Subjt:  QQQVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQRNKFQYDPESYAQNFNGGLDGEDDCPLASLQASSDFEI

TrEMBL top hitse value%identityAlignment
A0A0A0LTG0 Uncharacterized protein7.9e-2569.05Show/hide
Query:  QQQVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQRNKFQYDPESYAQNFNGGLDGEDDCPLASLQASSDFEI
        Q+Q REEESWMV++L+ ++EVSEMVAGPKWKNFIRKMGGYLKGK++RN+FQYDPESYA NF+GG DGE+D     +  SS F +
Subjt:  QQQVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQRNKFQYDPESYAQNFNGGLDGEDDCPLASLQASSDFEI

A0A1S3B8N4 uncharacterized protein LOC1034873837.1e-2672.62Show/hide
Query:  QQQVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQRNKFQYDPESYAQNFNGGLDGEDDCPLASLQASSDFEI
        Q+Q REEESWMV+KL+ +KEVSEMVAGPKWKNFIRKMGGYLKGK+QRN+FQYDPESYA NF+GG DGE+D     +  SS F +
Subjt:  QQQVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQRNKFQYDPESYAQNFNGGLDGEDDCPLASLQASSDFEI

A0A5A7U6Q0 Uncharacterized protein7.1e-2672.62Show/hide
Query:  QQQVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQRNKFQYDPESYAQNFNGGLDGEDDCPLASLQASSDFEI
        Q+Q REEESWMV+KL+ +KEVSEMVAGPKWKNFIRKMGGYLKGK+QRN+FQYDPESYA NF+GG DGE+D     +  SS F +
Subjt:  QQQVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQRNKFQYDPESYAQNFNGGLDGEDDCPLASLQASSDFEI

A0A6J1EGU0 uncharacterized protein LOC1114339733.2e-2683.33Show/hide
Query:  QQQVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQRNKFQYDPESYAQNFNGGLDGEDDCP
        QQ+ REEE WMV+KL+ LKEVSEMVAGPKWKNFIRKMGGYLKGK+QRN+FQYDPESYA NF+GG+DGEDD P
Subjt:  QQQVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQRNKFQYDPESYAQNFNGGLDGEDDCP

A0A6J1KR34 uncharacterized protein LOC1114968803.2e-2683.33Show/hide
Query:  QQQVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQRNKFQYDPESYAQNFNGGLDGEDDCP
        QQ+ REEE WMV+KL+ LKEVSEMVAGPKWKNFIRKMGGYLKG++QRN+FQYDPESYA NF+GGLDGEDD P
Subjt:  QQQVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQRNKFQYDPESYAQNFNGGLDGEDDCP

SwissProt top hitse value%identityAlignment
F4HQA1 Protein PAF1 homolog8.4e-1673.68Show/hide
Query:  VHATNKNLYPVEVLPFLPDFDRYDDPFFVVAFDRAPTVDSETFNKLDQSIRDAHESQ
        VHATNKNL PVEVLP LP FDRYD+ F V  FD AP  DSE F KLD SIRDAHES+
Subjt:  VHATNKNLYPVEVLPFLPDFDRYDDPFFVVAFDRAPTVDSETFNKLDQSIRDAHESQ

Arabidopsis top hitse value%identityAlignment
AT1G79730.1 hydroxyproline-rich glycoprotein family protein6.0e-1773.68Show/hide
Query:  VHATNKNLYPVEVLPFLPDFDRYDDPFFVVAFDRAPTVDSETFNKLDQSIRDAHESQ
        VHATNKNL PVEVLP LP FDRYD+ F V  FD AP  DSE F KLD SIRDAHES+
Subjt:  VHATNKNLYPVEVLPFLPDFDRYDDPFFVVAFDRAPTVDSETFNKLDQSIRDAHESQ

AT3G48020.1 unknown protein1.1e-0538.24Show/hide
Query:  EEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKR---QRNKFQYDPESYAQNFNGGLDGEDD
        +E  W VR    ++E SE+VAGP+WK FIR+     +  +     +KF+YDP SY  +F      +DD
Subjt:  EEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKR---QRNKFQYDPESYAQNFNGGLDGEDD

AT5G14890.1 NHL domain-containing protein1.8e-0538.03Show/hide
Query:  QVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMG------GYLKG---KRQRNKFQYDPESYAQNFNGG
        ++  +E W V     ++E SE+VAGPKWK FIR+ G      G + G   + +   F+YD  SY+ NF+ G
Subjt:  QVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMG------GYLKG---KRQRNKFQYDPESYAQNFNGG

AT5G25240.1 unknown protein4.9e-1143.16Show/hide
Query:  EDES---GGWVSVEFVAAAASGDQQQVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQRNKFQYDPESYAQNFNGGLDGEDDCP
        +DES   GGW          SG  Q+ R   +W   KL+ LKE+SE +AGPKWKNFIR      K  R+   F YD ++Y+ NF+ G DG+D  P
Subjt:  EDES---GGWVSVEFVAAAASGDQQQVREEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQRNKFQYDPESYAQNFNGGLDGEDDCP

AT5G62865.1 unknown protein1.3e-0642.65Show/hide
Query:  EEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQ---RNKFQYDPESYAQNFNGGLDGEDD
        +E  W +R    ++E SE+VAGP+WK FIR+     +  R      KFQYDP SY+ NF+   D E+D
Subjt:  EEESWMVRKLRNLKEVSEMVAGPKWKNFIRKMGGYLKGKRQ---RNKFQYDPESYAQNFNGGLDGEDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGAAGTTGAGAGAGGGTCTGGGTTCTTCTCTTGCGATTGTTCTTCTCTATATTCAGCTTTGAGGGTGTATTGTTCTTCTGGGTTGATTTTGCTTGTCGATTTGTG
GGTCTCCTATATCCGAGTGGAGAAATGGAGAGTGGCGGAGGGTGCAGCGGAAGGAGCTGAGGATGAGAGTGGAGGTTGGGTTTCAGTTGAATTTGTTGCAGCTGCCGCTA
GTGGAGATCAGCAACAGGTAAGGGAAGAGGAATCTTGGATGGTGAGGAAATTGAGGAATTTGAAGGAGGTTTCAGAAATGGTGGCTGGACCCAAATGGAAGAATTTCATT
AGAAAAATGGGTGGCTATTTGAAGGGGAAAAGGCAGAGGAACAAGTTTCAGTATGACCCTGAAAGCTATGCTCAGAATTTCAATGGCGGTCTCGATGGAGAAGACGATTG
CCCGCTGGCTTCTCTTCAAGCATCGTCAGATTTCGAGATACTTGTTCAAAGAGGTATTGTTCATGCAACTAATAAGAATTTATATCCTGTGGAGGTTTTACCATTTCTAC
CTGATTTTGATAGGTATGATGATCCATTTTTTGTGGTGGCATTTGATAGAGCTCCCACGGTTGATTCAGAGACTTTCAACAAGTTAGACCAATCCATCCGTGATGCTCAT
GAATCACAAGTTGGTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGAAGTTGAGAGAGGGTCTGGGTTCTTCTCTTGCGATTGTTCTTCTCTATATTCAGCTTTGAGGGTGTATTGTTCTTCTGGGTTGATTTTGCTTGTCGATTTGTG
GGTCTCCTATATCCGAGTGGAGAAATGGAGAGTGGCGGAGGGTGCAGCGGAAGGAGCTGAGGATGAGAGTGGAGGTTGGGTTTCAGTTGAATTTGTTGCAGCTGCCGCTA
GTGGAGATCAGCAACAGGTAAGGGAAGAGGAATCTTGGATGGTGAGGAAATTGAGGAATTTGAAGGAGGTTTCAGAAATGGTGGCTGGACCCAAATGGAAGAATTTCATT
AGAAAAATGGGTGGCTATTTGAAGGGGAAAAGGCAGAGGAACAAGTTTCAGTATGACCCTGAAAGCTATGCTCAGAATTTCAATGGCGGTCTCGATGGAGAAGACGATTG
CCCGCTGGCTTCTCTTCAAGCATCGTCAGATTTCGAGATACTTGTTCAAAGAGGTATTGTTCATGCAACTAATAAGAATTTATATCCTGTGGAGGTTTTACCATTTCTAC
CTGATTTTGATAGGTATGATGATCCATTTTTTGTGGTGGCATTTGATAGAGCTCCCACGGTTGATTCAGAGACTTTCAACAAGTTAGACCAATCCATCCGTGATGCTCAT
GAATCACAAGTTGGTTCTTAA
Protein sequenceShow/hide protein sequence
MSEVERGSGFFSCDCSSLYSALRVYCSSGLILLVDLWVSYIRVEKWRVAEGAAEGAEDESGGWVSVEFVAAAASGDQQQVREEESWMVRKLRNLKEVSEMVAGPKWKNFI
RKMGGYLKGKRQRNKFQYDPESYAQNFNGGLDGEDDCPLASLQASSDFEILVQRGIVHATNKNLYPVEVLPFLPDFDRYDDPFFVVAFDRAPTVDSETFNKLDQSIRDAH
ESQVGS