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Spg011471 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011471
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold8:13759119..13764434
RNA-Seq ExpressionSpg011471
SyntenySpg011471
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]3.8e-1172.34Show/hide
Query:  MRDCPLICTGESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
        MRDCPLICTGES    DSI L F GQDR+GSWEH+ TRWN LLP  R
Subjt:  MRDCPLICTGESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]2.7e-0971.11Show/hide
Query:  DCPLICTGESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
        DCPLI T ES   ADS+ L FWGQDRV SWEH+ TRWNSLLP  R
Subjt:  DCPLICTGESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
KAA0049822.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-0676.47Show/hide
Query:  MRDCPLICTGESDLFADSISLPFWGQDRVGSWEH
        +RDCPLICTGES   ADSI L FWGQDRVG W+H
Subjt:  MRDCPLICTGESDLFADSISLPFWGQDRVGSWEH
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]1.7e-1170.21Show/hide
Query:  MRDCPLICTGESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
        +RDCPL CTGES    DSI L FWGQDRVGSWEH+ TRWNS +P  R
Subjt:  MRDCPLICTGESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
TYK08698.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-0676.47Show/hide
Query:  MRDCPLICTGESDLFADSISLPFWGQDRVGSWEH
        +RDCPLICTGES   ADSI L FWGQDRVG W+H
Subjt:  MRDCPLICTGESDLFADSISLPFWGQDRVGSWEH
TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein1.9e-1172.34Show/hide
Query:  MRDCPLICTGESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
        MRDCPLICTGES    DSI L F GQDR+GSWEH+ TRWN LLP  R
Subjt:  MRDCPLICTGESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
A0A5A7U202 Reverse transcriptase1.1e-0676.47Show/hide
Query:  MRDCPLICTGESDLFADSISLPFWGQDRVGSWEH
        +RDCPLICTGES   ADSI L FWGQDRVG W+H
Subjt:  MRDCPLICTGESDLFADSISLPFWGQDRVGSWEH
A0A5A7U2P4 Integrase catalytic domain-containing protein1.3e-0971.11Show/hide
Query:  DCPLICTGESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
        DCPLI T ES   ADS+ L FWGQDRV SWEH+ TRWNSLLP  R
Subjt:  DCPLICTGESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
A0A5D3C3J6 Gag/pol protein8.3e-1270.21Show/hide
Query:  MRDCPLICTGESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
        +RDCPL CTGES    DSI L FWGQDRVGSWEH+ TRWNS +P  R
Subjt:  MRDCPLICTGESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIR
A0A5D3CBX3 Reverse transcriptase1.1e-0676.47Show/hide
Query:  MRDCPLICTGESDLFADSISLPFWGQDRVGSWEH
        +RDCPLICTGES   ADSI L FWGQDRVG W+H
Subjt:  MRDCPLICTGESDLFADSISLPFWGQDRVGSWEH
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGACCTGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGAAGCTGGGAACATAGTCTTAC
AAGATGGAATTCACTCCTTCCCGACATTAGGGTAAGTAGAGGTTGTTCATTAGAGGAGCACTGGGCTTTATCCCTACAAGTAGAGGACGACGCGCCTTTGTTCAAGCCCC
GGAATCAGCTCTCAAGGGAACACACATCTACATTCCCCAATAGGGGAATGAGTGAATTCCATCTTGTATTGTTATGTTTCCAGCCCCCATTCGGTCTTGCCCCTAAAATG
GATACCCCCACCCGCATGTCTCCTTCATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGCCGTATCACATAGTGTCACCAGGATAAGCTTGGGAAGGAT
GACTGATGGGAAGAAAGGAAAATCAGTTTTTGCGTGGCTCAATGGAGGAAAATGGGCAGCCTTTTGGGAGTTGGAATTGAAAGAAAATTTGAAAATTAAAGGGGGAAGTG
ACAAGTGTATCACATGCTTCAGCTTCCAATTCCGAGAGTTATCACATGGGAGCATTGAAGGTGATGAATTCATCAATTTAAGAATGGTACCCGAAAGGTTGAGCATCAAG
AAACTCTCAGTTTTCCCTTCCTTCCTATGCCAGCCGAAAAGAAATACTACCTTCCTCCTTTTGAAGCTCTCGGGTTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGACCTGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGAAGCTGGGAACATAGTCTTAC
AAGATGGAATTCACTCCTTCCCGACATTAGGGTAAGTAGAGGTTGTTCATTAGAGGAGCACTGGGCTTTATCCCTACAAGTAGAGGACGACGCGCCTTTGTTCAAGCCCC
GGAATCAGCTCTCAAGGGAACACACATCTACATTCCCCAATAGGGGAATGAGTGAATTCCATCTTGTATTGTTATGTTTCCAGCCCCCATTCGGTCTTGCCCCTAAAATG
GATACCCCCACCCGCATGTCTCCTTCATGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGCCGTATCACATAGTGTCACCAGGATAAGCTTGGGAAGGAT
GACTGATGGGAAGAAAGGAAAATCAGTTTTTGCGTGGCTCAATGGAGGAAAATGGGCAGCCTTTTGGGAGTTGGAATTGAAAGAAAATTTGAAAATTAAAGGGGGAAGTG
ACAAGTGTATCACATGCTTCAGCTTCCAATTCCGAGAGTTATCACATGGGAGCATTGAAGGTGATGAATTCATCAATTTAAGAATGGTACCCGAAAGGTTGAGCATCAAG
AAACTCTCAGTTTTCCCTTCCTTCCTATGCCAGCCGAAAAGAAATACTACCTTCCTCCTTTTGAAGCTCTCGGGTTGCTGA
Protein sequenceShow/hide protein sequence
MRDCPLICTGESDLFADSISLPFWGQDRVGSWEHSLTRWNSLLPDIRVSRGCSLEEHWALSLQVEDDAPLFKPRNQLSREHTSTFPNRGMSEFHLVLLCFQPPFGLAPKM
DTPTRMSPSWMLWIIASVSNTRWAVSHSVTRISLGRMTDGKKGKSVFAWLNGGKWAAFWELELKENLKIKGGSDKCITCFSFQFRELSHGSIEGDEFINLRMVPERLSIK
KLSVFPSFLCQPKRNTTFLLLKLSGC