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Spg011472 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011472
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold8:14094352..14095335
RNA-Seq ExpressionSpg011472
SyntenySpg011472
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]3.0e-1754.29Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSVESSSSSSSTWVELYIESVYIVNVF-------------VHRFQEGQRVSLEEDDVRWPHAIFRTKLAGGP
        MTEILS RLYGTVCTQV+IELP+PDTLPTS ESS S+ +TW+ELY ESV+ V +F             V     G    +  DDV W HA+FR K A  P
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSVESSSSSSSTWVELYIESVYIVNVF-------------VHRFQEGQRVSLEEDDVRWPHAIFRTKLAGGP

Query:  GGGVT
        G  VT
Subjt:  GGGVT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]9.8e-2156.48Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSSSSSSTWVELYIESVYIVNVFVHRFQEGQRVSLEEDDVRWPHAIFRTKL
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTS ESS S+SSTW+ELY+E V++   ++          + EDDV W HA+FR K 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSSSSSSTWVELYIESVYIVNVFVHRFQEGQRVSLEEDDVRWPHAIFRTKL

Query:  AGGPGGGV
        AGGPGGGV
Subjt:  AGGPGGGV

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.0e-1746.72Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSSSSSSTWVELYIESVYIVNVFV---------HRFQEGQRVSLEEDDVRW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTS E   S+SSTW+ELY+ESV++  +F          +   EG    +  DDV W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSSSSSSTWVELYIESVYIVNVFV---------HRFQEGQRVSLEEDDVRW

Query:  PHAIFRTKLAGGPGGGVTLKEMIQGETLEDLLGEQKE
         HA+FR K AGGP GGVT      G   +D++ E+K+
Subjt:  PHAIFRTKLAGGPGGGVTLKEMIQGETLEDLLGEQKE

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]3.6e-1548.18Show/hide
Query:  VEIELPVPDTLPTSVESSSSSSSTWVELYIESVYIVNVFV---------HRFQEGQRVSLEEDDVRWPHAIFRTKLAGGPGGGVTLKEMIQGETLEDLLG
        VEIELP+PDTLPTS ESS S+SSTW+ELY ESV++  +F          +   EG    +  DDV W HAIFR K AGGPGGGVT  + +     E   G
Subjt:  VEIELPVPDTLPTSVESSSSSSSTWVELYIESVYIVNVFV---------HRFQEGQRVSLEEDDVRWPHAIFRTKLAGGPGGGVTLKEMIQGETLEDLLG

Query:  EQKEKGGKKI
         +      KI
Subjt:  EQKEKGGKKI

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]9.8e-2156.48Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSSSSSSTWVELYIESVYIVNVFVHRFQEGQRVSLEEDDVRWPHAIFRTKL
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTS ESS S+SSTW+ELY+E V++   ++          + EDDV W HA+FR K 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSSSSSSTWVELYIESVYIVNVFVHRFQEGQRVSLEEDDVRWPHAIFRTKL

Query:  AGGPGGGV
        AGGPGGGV
Subjt:  AGGPGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein1.7e-1548.18Show/hide
Query:  VEIELPVPDTLPTSVESSSSSSSTWVELYIESVYIVNVFV---------HRFQEGQRVSLEEDDVRWPHAIFRTKLAGGPGGGVTLKEMIQGETLEDLLG
        VEIELP+PDTLPTS ESS S+SSTW+ELY ESV++  +F          +   EG    +  DDV W HAIFR K AGGPGGGVT  + +     E   G
Subjt:  VEIELPVPDTLPTSVESSSSSSSTWVELYIESVYIVNVFV---------HRFQEGQRVSLEEDDVRWPHAIFRTKLAGGPGGGVTLKEMIQGETLEDLLG

Query:  EQKEKGGKKI
         +      KI
Subjt:  EQKEKGGKKI

A0A5A7V638 Uncharacterized protein1.4e-1754.29Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSVESSSSSSSTWVELYIESVYIVNVF-------------VHRFQEGQRVSLEEDDVRWPHAIFRTKLAGGP
        MTEILS RLYGTVCTQV+IELP+PDTLPTS ESS S+ +TW+ELY ESV+ V +F             V     G    +  DDV W HA+FR K A  P
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSVESSSSSSSTWVELYIESVYIVNVF-------------VHRFQEGQRVSLEEDDVRWPHAIFRTKLAGGP

Query:  GGGVT
        G  VT
Subjt:  GGGVT

A0A5A7VMG9 Reverse transcriptase4.8e-2156.48Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSSSSSSTWVELYIESVYIVNVFVHRFQEGQRVSLEEDDVRWPHAIFRTKL
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTS ESS S+SSTW+ELY+E V++   ++          + EDDV W HA+FR K 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSSSSSSTWVELYIESVYIVNVFVHRFQEGQRVSLEEDDVRWPHAIFRTKL

Query:  AGGPGGGV
        AGGPGGGV
Subjt:  AGGPGGGV

A0A5D3CCC7 DNA/RNA polymerases superfamily protein4.9e-1846.72Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSSSSSSTWVELYIESVYIVNVFV---------HRFQEGQRVSLEEDDVRW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTS E   S+SSTW+ELY+ESV++  +F          +   EG    +  DDV W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSSSSSSTWVELYIESVYIVNVFV---------HRFQEGQRVSLEEDDVRW

Query:  PHAIFRTKLAGGPGGGVTLKEMIQGETLEDLLGEQKE
         HA+FR K AGGP GGVT      G   +D++ E+K+
Subjt:  PHAIFRTKLAGGPGGGVTLKEMIQGETLEDLLGEQKE

A0A5D3DX39 Reverse transcriptase4.8e-2156.48Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSSSSSSTWVELYIESVYIVNVFVHRFQEGQRVSLEEDDVRWPHAIFRTKL
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTS ESS S+SSTW+ELY+E V++   ++          + EDDV W HA+FR K 
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSVESSSSSSSTWVELYIESVYIVNVFVHRFQEGQRVSLEEDDVRWPHAIFRTKL

Query:  AGGPGGGV
        AGGPGGGV
Subjt:  AGGPGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACATTGCCAACGTCTGTTGAAAGTTCCAGTTCAAG
CTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTGTCTATATTGTAAATGTTTTTGTTCATCGTTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCGTT
GGCCTCATGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCAGGAGGGGGTGTGACACTTAAAGAAATGATACAAGGAGAAACATTGGAGGATTTACTTGGAGAACAAAAA
GAAAAAGGTGGGAAAAAGATTGAAGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACATTGCCAACGTCTGTTGAAAGTTCCAGTTCAAG
CTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTGTCTATATTGTAAATGTTTTTGTTCATCGTTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCGTT
GGCCTCATGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCAGGAGGGGGTGTGACACTTAAAGAAATGATACAAGGAGAAACATTGGAGGATTTACTTGGAGAACAAAAA
GAAAAAGGTGGGAAAAAGATTGAAGTATAA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSVESSSSSSSTWVELYIESVYIVNVFVHRFQEGQRVSLEEDDVRWPHAIFRTKLAGGPGGGVTLKEMIQGETLEDLLGEQK
EKGGKKIEV