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Spg011507 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg011507
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold8:14200347..14205457
RNA-Seq ExpressionSpg011507
SyntenySpg011507
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.9e-2255.97Show/hide
Query:  VYKLNQKLYL--------------VSCRVFENEEFDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSV
        V K NQKLYL               S +  E ++  ++ ++  SVL      +  VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    FNVSV
Subjt:  VYKLNQKLYL--------------VSCRVFENEEFDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSV

Query:  GSTGIVRGDDVCWLHAVFRAKLAGGPGGDVGSVQ
        GSTGIVRGDDVC LH VFRAK AGGPGG V  V+
Subjt:  GSTGIVRGDDVCWLHAVFRAKLAGGPGGDVGSVQ

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]1.4e-2280Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        VEIELPVPDTLPTS ESS S+SSYF NQVMSGLH V    FN+SV STGIVRGDDVCWLHAVFRAK  GGP G V
Subjt:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]2.1e-2146.84Show/hide
Query:  VYKLNQKLYLVSCRVFENEEFDVYCINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES
        V+K  QKLYLVSCRV ENE+F VY IN G VLRKLWVLEVR                                          VEIELPVPDTLPT    
Subjt:  VYKLNQKLYLVSCRVFENEEFDVYCINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES

Query:  SRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
              Y P+ V +  +  +        GS GIVRGDDVCWLHAV RAK+AGGPGG V
Subjt:  SRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]2.4e-2253.62Show/hide
Query:  VYKLNQKLYL------VSCRVFENEEFDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVY
        ++KLNQKLYL      +S +  E ++  ++ ++  SVLR     +    IELPVPDTLPTSAESS S+SS                 F NQVMS LH V 
Subjt:  VYKLNQKLYL------VSCRVFENEEFDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVY

Query:  VERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
           FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG V
Subjt:  VERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV

TYK14495.1 putative polyprotein [Cucumis melo var. makuwa]1.2e-2143.93Show/hide
Query:  VYKLNQKLYLVSCRVFENEEFDVYCINFGSVLRKLWVLEVR-----------------------------------------------------------
        V+K NQKLYLVSCRVFENE F VY INFG VLRKLWVLE R                                                           
Subjt:  VYKLNQKLYLVSCRVFENEEFDVYCINFGSVLRKLWVLEVR-----------------------------------------------------------

Query:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        VEIELPVPDTLPTSAES                       F  +  S GIVRGDDVCWLHAVFRAK AG PGG
Subjt:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein9.0e-2355.97Show/hide
Query:  VYKLNQKLYL--------------VSCRVFENEEFDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSV
        V K NQKLYL               S +  E ++  ++ ++  SVL      +  VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    FNVSV
Subjt:  VYKLNQKLYL--------------VSCRVFENEEFDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSV

Query:  GSTGIVRGDDVCWLHAVFRAKLAGGPGGDVGSVQ
        GSTGIVRGDDVC LH VFRAK AGGPGG V  V+
Subjt:  GSTGIVRGDDVCWLHAVFRAKLAGGPGGDVGSVQ

A0A5D3BMJ4 Retrotrans_gag domain-containing protein6.9e-2380Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        VEIELPVPDTLPTS ESS S+SSYF NQVMSGLH V    FN+SV STGIVRGDDVCWLHAVFRAK  GGP G V
Subjt:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV

A0A5D3CJL4 Retrotrans_gag domain-containing protein1.0e-2146.84Show/hide
Query:  VYKLNQKLYLVSCRVFENEEFDVYCINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES
        V+K  QKLYLVSCRV ENE+F VY IN G VLRKLWVLEVR                                          VEIELPVPDTLPT    
Subjt:  VYKLNQKLYLVSCRVFENEEFDVYCINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES

Query:  SRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
              Y P+ V +  +  +        GS GIVRGDDVCWLHAV RAK+AGGPGG V
Subjt:  SRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV

A0A5D3CJX3 CCHC-type domain-containing protein1.2e-2253.62Show/hide
Query:  VYKLNQKLYL------VSCRVFENEEFDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVY
        ++KLNQKLYL      +S +  E ++  ++ ++  SVLR     +    IELPVPDTLPTSAESS S+SS                 F NQVMS LH V 
Subjt:  VYKLNQKLYL------VSCRVFENEEFDVYCINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVY

Query:  VERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
           FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG V
Subjt:  VERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV

A0A5D3CSJ5 Putative polyprotein5.8e-2243.93Show/hide
Query:  VYKLNQKLYLVSCRVFENEEFDVYCINFGSVLRKLWVLEVR-----------------------------------------------------------
        V+K NQKLYLVSCRVFENE F VY INFG VLRKLWVLE R                                                           
Subjt:  VYKLNQKLYLVSCRVFENEEFDVYCINFGSVLRKLWVLEVR-----------------------------------------------------------

Query:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        VEIELPVPDTLPTSAES                       F  +  S GIVRGDDVCWLHAVFRAK AG PGG
Subjt:  VEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATTCTACCCGAATACTTGATTCATAGTCACAAATCACAGCACTTTAAGGAGAGAGTGAAGGAGGAGGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGAT
AGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGCGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGCATTCTGGGG
TGTACAAGTTGAATCAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTGCATTAATTTTGGTTCCGTATTGAGGAAGTTGTGGGTG
TTGGAAGTTAGGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCT
GCACCATGTGTATGTTGAAAGGTTCAACGTTTCAGTAGGGTCAACAGGGATTGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTG
GTCCGGGAGGGGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCTGAGTATTGTTGAGAGTGAGTCCAGTCCGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGATTCTACCCGAATACTTGATTCATAGTCACAAATCACAGCACTTTAAGGAGAGAGTGAAGGAGGAGGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGAT
AGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGCGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGCATTCTGGGG
TGTACAAGTTGAATCAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTGCATTAATTTTGGTTCCGTATTGAGGAAGTTGTGGGTG
TTGGAAGTTAGGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCT
GCACCATGTGTATGTTGAAAGGTTCAACGTTTCAGTAGGGTCAACAGGGATTGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTG
GTCCGGGAGGGGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCTGAGTATTGTTGAGAGTGAGTCCAGTCCGGACTAG
Protein sequenceShow/hide protein sequence
MVILPEYLIHSHKSQHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICDQPVNLWFFIRFELHRRNQEHSGVYKLNQKLYLVSCRVFENEEFDVYCINFGSVLRKLWV
LEVRVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDVGSVQIELAEYGLSIVESESSPD