CuGenDBv2

Gene ID	Spg011536
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNase H domain-containing protein
Genome location	scaffold8:15354465..15359385
RNA-Seq Expression	Spg011536
Synteny	Spg011536
Gene Ontology terms	GO:0006259 - DNA metabolic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR044730 - Ribonuclease H-like domain, plant type

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0026081.1 pol protein [Cucumis melo var. makuwa]

8.5e-10

69.57

Show/hide

Query:  QNCPLICMGESGQYADSISLPLWGQDRMGSWEHNRARWNSLLPDFR
        ++CPLIC GESGQ  DSI L   GQDR+GSWEHN  RWN LLP FR
Subjt:  QNCPLICMGESGQYADSISLPLWGQDRMGSWEHNRARWNSLLPDFR

KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]

2.9e-10

57.14

Show/hide

Query:  NCPLICMGESGQYADSISLPLWGQDRMGSWEHNRARWNSLLPDFREADESGVTDTR
        +CPLI   ESGQ ADS+ L  WGQDR+ SWEHN  RWNSLLP FRE  +  + + +
Subjt:  NCPLICMGESGQYADSISLPLWGQDRMGSWEHNRARWNSLLPDFREADESGVTDTR

KMS97072.1 hypothetical protein BVRB_7g179330 [Beta vulgaris subsp. vulgaris]

5.0e-10

31.15

Show/hide

Query:  STKFLENNAYAAWGNSPPSIGIGCVIRDKNGQIRGASASYMDVDLDSTIAELRAISEGVKLAVLLGFDRIIVESDCSLAINLIEKKIEHWDEVEPIIEAI
        S  F++ N  AA       +G+G V RD+NGQ+  A +  M  D  +  AE  A+    + A+  G+  +++ESD  + IN I  +++   +++ ++E +
Subjt:  STKFLENNAYAAWGNSPPSIGIGCVIRDKNGQIRGASASYMDVDLDSTIAELRAISEGVKLAVLLGFDRIIVESDCSLAINLIEKKIEHWDEVEPIIEAI

Query:  WALFPLFSDIKFSFAHKKCNNV
          L P F  IKFSF +++CN +
Subjt:  WALFPLFSDIKFSFAHKKCNNV

TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-10

65.96

Show/hide

Query:  QNCPLICMGESGQYADSISLPLWGQDRMGSWEHNRARWNSLLPDFRE
        ++CPL C GESGQ  DSI L  WGQDR+GSWEHN  RWNS +P FR+
Subjt:  QNCPLICMGESGQYADSISLPLWGQDRMGSWEHNRARWNSLLPDFRE

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]

4.5e-11

34.59

Show/hide

Query:  TKFLENNAYAAWGNSPPSIGIGCVIRDKNGQIRGASASYMDVDLDSTIAELRAISEGVKLAVLLGFDRIIVESDCSLAINLIEKKIEHWDEVEPIIEAIW
        T F++ N  AAW  SP S G   +IRD  G ++    S +D      +AE   + +G++L   + F +IIV+SDCS AI+L  K +     V   +E IW
Subjt:  TKFLENNAYAAWGNSPPSIGIGCVIRDKNGQIRGASASYMDVDLDSTIAELRAISEGVKLAVLLGFDRIIVESDCSLAINLIEKKIEHWDEVEPIIEAIW

Query:  ALFPLFSDIKFSFAHKKCNNVVDVVIAKQARRL
         +  +F  I F++  +  N + D+V AK+ R L
Subjt:  ALFPLFSDIKFSFAHKKCNNVVDVVIAKQARRL

TrEMBL top hits

e value

%identity

Alignment

A0A0J8BAU9 Uncharacterized protein

2.4e-10

31.15

Show/hide

Query:  STKFLENNAYAAWGNSPPSIGIGCVIRDKNGQIRGASASYMDVDLDSTIAELRAISEGVKLAVLLGFDRIIVESDCSLAINLIEKKIEHWDEVEPIIEAI
        S  F++ N  AA       +G+G V RD+NGQ+  A +  M  D  +  AE  A+    + A+  G+  +++ESD  + IN I  +++   +++ ++E +
Subjt:  STKFLENNAYAAWGNSPPSIGIGCVIRDKNGQIRGASASYMDVDLDSTIAELRAISEGVKLAVLLGFDRIIVESDCSLAINLIEKKIEHWDEVEPIIEAI

Query:  WALFPLFSDIKFSFAHKKCNNV
          L P F  IKFSF +++CN +
Subjt:  WALFPLFSDIKFSFAHKKCNNV

A0A1R3J1E8 Reverse transcriptase

3.3e-07

31.97

Show/hide

Query:  PSSTKFLENNAYAAWGNSPPSIGIGCVIRDKNGQIRGASASYMDVDLDSTIAELRAISEGVKLAVLLGFDRIIVESDCSLAINLIEKKIEHWDEVEPIIE
        P S   ++ N   ++      +G+G V+RD +G I  +++  +        AE+ A+  G ++A+ LG  R IVESDC +AI+ I+     W E   +I 
Subjt:  PSSTKFLENNAYAAWGNSPPSIGIGCVIRDKNGQIRGASASYMDVDLDSTIAELRAISEGVKLAVLLGFDRIIVESDCSLAINLIEKKIEHWDEVEPIIE

Query:  AIWALFPLFSDIKFSFAHKKCN
         IW L  LF +  FS  H++ N
Subjt:  AIWALFPLFSDIKFSFAHKKCN

A0A5A7SPG1 Pol protein

4.1e-10

69.57

Show/hide

Query:  QNCPLICMGESGQYADSISLPLWGQDRMGSWEHNRARWNSLLPDFR
        ++CPLIC GESGQ  DSI L   GQDR+GSWEHN  RWN LLP FR
Subjt:  QNCPLICMGESGQYADSISLPLWGQDRMGSWEHNRARWNSLLPDFR

A0A5A7U2P4 Integrase catalytic domain-containing protein

1.4e-10

57.14

Show/hide

Query:  NCPLICMGESGQYADSISLPLWGQDRMGSWEHNRARWNSLLPDFREADESGVTDTR
        +CPLI   ESGQ ADS+ L  WGQDR+ SWEHN  RWNSLLP FRE  +  + + +
Subjt:  NCPLICMGESGQYADSISLPLWGQDRMGSWEHNRARWNSLLPDFREADESGVTDTR

A0A5D3C3J6 Gag/pol protein

6.4e-11

65.96

Show/hide

Query:  QNCPLICMGESGQYADSISLPLWGQDRMGSWEHNRARWNSLLPDFRE
        ++CPL C GESGQ  DSI L  WGQDR+GSWEHN  RWNS +P FR+
Subjt:  QNCPLICMGESGQYADSISLPLWGQDRMGSWEHNRARWNSLLPDFRE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

3.4e-09

28.69

Show/hide

Query:  KFLENNAYAAWGNSPPSIGIGCVIRDKNGQIRGASASYMDVDLDSTIAELRAISEGVKLAVLLGFDRIIVESDCSLAINLIEKKIEHWDEVEPIIEAIWA
        ++++ N  A W    P  GIG ++R+++G +    A  +    +   AEL A+   V       + RII ESD    +NL+    + W  ++P +E I  
Subjt:  KFLENNAYAAWGNSPPSIGIGCVIRDKNGQIRGASASYMDVDLDSTIAELRAISEGVKLAVLLGFDRIIVESDCSLAINLIEKKIEHWDEVEPIIEAIWA

Query:  LFPLFSDIKFSFAHKKCNNVVD
        L   F ++KF F  +  N V D
Subjt:  LFPLFSDIKFSFAHKKCNNVVD

AT4G29090.1 Ribonuclease H-like superfamily protein

4.2e-07

Show/hide

Query:  PSSTKFLENNAYAAWGNSPPSIGIGCVIRDKNGQIRGASASYMDVDLDSTIAELRAISEGVKLAVLLGFDRIIVESDCSLAINLIEKKIEHWDEVEPIIE
        P   ++++ N  A W       GIG V+R++ G+++   A  +        AEL A+   V       ++ +I ESD  + I ++    E W  ++P I+
Subjt:  PSSTKFLENNAYAAWGNSPPSIGIGCVIRDKNGQIRGASASYMDVDLDSTIAELRAISEGVKLAVLLGFDRIIVESDCSLAINLIEKKIEHWDEVEPIIE

Query:  AIWALFPLFSDIKFSFAHKKCNNVVDVV
         +  L   F+++KF F  ++ N + + V
Subjt:  AIWALFPLFSDIKFSFAHKKCNNVVDVV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATCCTTCCTCCACAAAATTTCTTGAAAATAATGCATACGCAGCTTGGGGAAATTCTCCGCCCTCGATAGGAATCGGTTGTGTGATTAGAGATAAGAATGGGCAAAT
CCGAGGTGCGTCTGCTTCATATATGGATGTTGATCTGGACAGTACAATCGCTGAACTCAGGGCAATTTCTGAGGGAGTCAAATTGGCAGTGTTGCTGGGATTTGATAGAA
TTATTGTGGAGTCTGATTGCTCACTGGCTATTAATCTCATCGAGAAAAAAATAGAGCACTGGGATGAAGTGGAACCAATTATTGAAGCTATATGGGCTCTTTTCCCTTTG
TTTTCGGATATTAAGTTTTCCTTTGCTCATAAAAAATGCAACAATGTTGTCGATGTCGTAATTGCAAAACAAGCTAGAAGATTAGTTGAGAGCAAGTATCCAAGAGTTCT
GCCAGATCCGAGTAGTTCGAGGTTCTATTCACTTGATGTGGCTGTTGTTGTCAATCGGATCATCTTCGAACATCAGAATTGTCCTTTGATTTGTATGGGTGAGAGTGGCC
AATACGCCGACTCAATAAGCCTACCACTTTGGGGACAAGATCGAATGGGGAGCTGGGAACATAATCGTGCAAGATGGAATTCACTCCTTCCCGACTTTAGGGAAGCAGAT
GAGTCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTAAGTTCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGCAACTAATCTGCCTCC
AGACGCAACAGCGTCGGGACGCTCCTTCAACAGCGTCTCGACGCTGTCTCGATACCGAAGGCGCTCGGTAAGGAAAGCACACAGCGTCGGGACGCTACCTCAACAGCGTC
CCGACGCTGTCTCGATTACTCAGGCGCCAGATATGGAAAACGCACAGCGTCGGGACGCTAATCTACACAGCGTCTCGACGCTGTCACGATGGAGGCGCGCACTAGGGTTT
CAACAGGCGCGGTTCAAGCAAGGACGGTCCGGTTCGGACCGGTTCGGCTGGGCTGGGACCTATTTGGTCCGGTTCAGCCAATTTTTGGCATGGTTCGTGATTTTGGAGGC
TGGTTCGAGGTGGTTCGGGGCGGTTCGTGCTGTCTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDPSSTKFLENNAYAAWGNSPPSIGIGCVIRDKNGQIRGASASYMDVDLDSTIAELRAISEGVKLAVLLGFDRIIVESDCSLAINLIEKKIEHWDEVEPIIEAIWALFPL
FSDIKFSFAHKKCNNVVDVVIAKQARRLVESKYPRVLPDPSSSRFYSLDVAVVVNRIIFEHQNCPLICMGESGQYADSISLPLWGQDRMGSWEHNRARWNSLLPDFREAD
ESGVTDTREGLTSRYWSKFRGHRKYVCSEKSATNLPPDATASGRSFNSVSTLSRYRRRSVRKAHSVGTLPQQRPDAVSITQAPDMENAQRRDANLHSVSTLSRWRRALGF
QQARFKQGRSGSDRFGWAGTYLVRFSQFLAWFVILEAGSRWFGAVRAV

Spg011536 (gene) of Sponge gourd (cylindrica) v1 genome